Wall clock time and date at job start Tue Mar 31 2020 18:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.35449 * 126.77365 * 2 1 4 4 C 1.41385 * 103.98568 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.80041 * 179.74079 * 4 3 2 6 6 O 1.42894 * 109.47675 * 359.97438 * 5 4 3 7 7 C 1.42902 * 114.00462 * 179.97438 * 6 5 4 8 8 C 1.50701 * 109.47197 * 180.02562 * 7 6 5 9 9 O 1.21278 * 119.99618 * 359.97438 * 8 7 6 10 10 N 1.34774 * 120.00045 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00008 * 180.02562 * 10 8 7 12 12 H 1.09001 * 110.56337 * 32.09250 * 11 10 8 13 13 C 1.54854 * 110.62455 * 269.01825 * 11 10 8 14 14 C 1.55842 * 103.44693 * 241.51041 * 13 11 10 15 15 H 1.09003 * 116.12641 * 159.14877 * 14 13 11 16 16 C 1.55842 * 105.06744 * 288.17633 * 14 13 11 17 17 C 1.54854 * 103.44483 * 71.82214 * 16 14 13 18 18 C 1.55843 * 103.44751 * 0.02562 * 17 16 14 19 19 H 1.08996 * 116.13271 * 159.14669 * 18 17 16 20 20 N 1.50239 * 101.05011 * 32.93918 * 14 13 11 21 21 C 1.36944 * 130.83823 * 126.01055 * 20 14 13 22 22 H 1.08003 * 119.99789 * 180.02562 * 21 20 14 23 23 C 1.38806 * 119.99740 * 0.02562 * 21 20 14 24 24 N 1.31622 * 120.00424 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99836 * 180.02562 * 23 21 20 26 26 H 1.48511 * 109.47026 * 0.02562 * 25 23 21 27 27 H 1.48496 * 109.47281 * 120.00123 * 25 23 21 28 28 H 1.48496 * 109.47163 * 240.00371 * 25 23 21 29 29 N 1.30179 * 106.39389 * 0.02562 * 4 3 2 30 30 O 1.20927 * 111.60367 * 359.97438 * 29 4 3 31 31 H 1.08992 * 109.47287 * 89.99876 * 1 2 3 32 32 H 1.09000 * 109.46745 * 209.99822 * 1 2 3 33 33 H 1.08996 * 109.46815 * 329.99376 * 1 2 3 34 34 H 1.08003 * 128.01213 * 0.02562 * 3 2 1 35 35 H 1.09002 * 109.47220 * 120.00648 * 5 4 3 36 36 H 1.09003 * 109.47042 * 240.00053 * 5 4 3 37 37 H 1.08994 * 109.47277 * 300.00786 * 7 6 5 38 38 H 1.09000 * 109.46116 * 60.00683 * 7 6 5 39 39 H 0.97003 * 119.99318 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.62600 * 0.02562 * 13 11 10 41 41 H 1.08997 * 110.62463 * 123.02468 * 13 11 10 42 42 H 1.09000 * 110.63086 * 190.31014 * 16 14 13 43 43 H 1.09004 * 110.62720 * 313.17621 * 16 14 13 44 44 H 1.09005 * 110.63023 * 241.51199 * 17 16 14 45 45 H 1.09007 * 110.62808 * 118.49120 * 17 16 14 46 46 H 0.97000 * 119.99698 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6214 0.5373 0.0006 5 6 4.9210 1.3002 -0.0046 6 8 4.6500 2.7031 -0.0110 7 6 5.8214 3.5216 -0.0158 8 6 5.4195 4.9740 -0.0217 9 8 4.2455 5.2782 -0.0224 10 7 6.3647 5.9347 -0.0274 11 6 5.9740 7.3466 -0.0326 12 1 5.0395 7.4872 0.5106 13 6 5.8499 7.8728 -1.4837 14 6 6.9204 9.0033 -1.5519 15 1 7.2627 9.2807 -2.5490 16 6 6.3371 10.1660 -0.6937 17 6 6.4611 9.6397 0.7574 18 6 7.1032 8.2310 0.5783 19 1 7.6035 7.8168 1.4536 20 7 7.9715 8.4609 -0.6256 21 6 9.3096 8.2430 -0.8191 22 1 9.9121 7.8390 -0.0189 23 6 9.8914 8.5413 -2.0435 24 7 9.1571 9.0341 -3.0184 25 14 11.7164 8.2433 -2.3077 26 1 12.3121 7.6873 -1.0660 27 1 11.9045 7.2790 -3.4211 28 1 12.3836 9.5261 -2.6459 29 7 3.4764 -0.7564 0.0003 30 8 2.3095 -1.0736 0.0002 31 1 -0.3633 0.0000 -1.0276 32 1 -0.3633 -0.8900 0.5138 33 1 -0.3633 0.8899 0.5139 34 1 2.0345 2.1271 0.0004 35 1 5.4958 1.0448 0.8857 36 1 5.4932 1.0370 -0.8942 37 1 6.4142 3.3126 0.8746 38 1 6.4127 3.3042 -0.9053 39 1 7.3036 5.6912 -0.0272 40 1 6.0787 7.0832 -2.1994 41 1 4.8533 8.2766 -1.6618 42 1 6.9267 11.0734 -0.8248 43 1 5.2934 10.3471 -0.9511 44 1 5.4782 9.5580 1.2216 45 1 7.1123 10.2861 1.3460 46 1 9.5637 9.2422 -3.8742 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110705981.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:40:24 Heat of formation + Delta-G solvation = 9.847994 kcal Electronic energy + Delta-G solvation = -28612.300539 eV Core-core repulsion = 24506.273846 eV Total energy + Delta-G solvation = -4106.026693 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.98260 -41.31251 -40.09595 -38.69095 -35.31724 -35.25095 -34.40170 -34.28556 -30.96262 -30.90360 -30.09175 -28.97170 -28.59362 -27.29485 -26.05724 -23.98769 -22.98455 -21.58245 -21.51784 -21.07885 -20.28092 -18.83637 -18.78662 -18.54364 -17.98343 -17.73449 -17.34032 -16.85107 -16.64672 -16.02610 -15.84454 -15.49332 -15.36100 -15.02382 -14.63811 -14.42879 -14.09433 -13.99782 -13.79147 -13.66180 -13.54756 -13.25095 -12.90420 -12.88736 -12.85990 -12.76072 -12.67976 -12.17441 -12.07859 -11.92592 -11.86514 -11.69267 -11.43230 -11.19291 -10.93900 -10.92209 -10.68863 -10.63033 -10.28206 -9.94640 -8.85617 -7.74203 -5.14113 0.43904 1.15780 1.50024 1.51606 1.60055 1.61588 1.69877 2.17183 2.51537 2.67068 3.38676 3.39833 3.47218 3.65396 3.76978 4.02552 4.05423 4.09144 4.14584 4.19582 4.25685 4.29236 4.33362 4.41550 4.47176 4.47665 4.50477 4.64418 4.71637 4.72682 4.84995 4.89261 4.92170 4.97631 5.11325 5.18795 5.20425 5.23555 5.39738 5.53864 5.60749 5.70245 5.88855 5.91630 6.29006 6.65074 7.07663 7.19283 7.28651 7.74592 8.60151 9.33290 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016995 B = 0.002305 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1647.147211 B =12146.130756 C =13210.771633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.023 4.023 3 C -0.233 4.233 4 C 0.006 3.994 5 C 0.142 3.858 6 O -0.381 6.381 7 C 0.050 3.950 8 C 0.509 3.491 9 O -0.574 6.574 10 N -0.701 5.701 11 C 0.141 3.859 12 H 0.086 0.914 13 C -0.134 4.134 14 C 0.139 3.861 15 H 0.115 0.885 16 C -0.133 4.133 17 C -0.120 4.120 18 C 0.129 3.871 19 H 0.106 0.894 20 N -0.610 5.610 21 C -0.210 4.210 22 H 0.088 0.912 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.973 3.027 26 H -0.264 1.264 27 H -0.299 1.299 28 H -0.302 1.302 29 N -0.385 5.385 30 O 0.092 5.908 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.095 0.905 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.103 0.897 39 H 0.410 0.590 40 H 0.035 0.965 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.060 0.940 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.937 -14.673 8.506 21.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.087 4.087 3 C -0.254 4.254 4 C -0.152 4.152 5 C 0.065 3.935 6 O -0.299 6.299 7 C -0.029 4.029 8 C 0.296 3.704 9 O -0.453 6.453 10 N -0.352 5.352 11 C 0.035 3.965 12 H 0.104 0.896 13 C -0.174 4.174 14 C 0.033 3.967 15 H 0.132 0.868 16 C -0.173 4.173 17 C -0.159 4.159 18 C 0.021 3.979 19 H 0.124 0.876 20 N -0.331 5.331 21 C -0.338 4.338 22 H 0.106 0.894 23 C -0.262 4.262 24 N -0.599 5.599 25 Si 0.804 3.196 26 H -0.189 1.189 27 H -0.227 1.227 28 H -0.230 1.230 29 N -0.093 5.093 30 O 0.026 5.974 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.124 0.876 34 H 0.191 0.809 35 H 0.112 0.888 36 H 0.106 0.894 37 H 0.134 0.866 38 H 0.121 0.879 39 H 0.245 0.755 40 H 0.054 0.946 41 H 0.082 0.918 42 H 0.056 0.944 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.078 0.922 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -12.810 -15.414 8.370 21.720 hybrid contribution 1.472 0.824 -0.738 1.841 sum -11.338 -14.590 7.632 19.992 Atomic orbital electron populations 1.20590 0.80629 1.06175 1.05587 1.25250 0.98000 0.84817 1.00601 1.22554 0.91013 1.01858 1.09996 1.23488 0.98231 0.90279 1.03221 1.20462 0.90059 0.79410 1.03598 1.87899 1.30430 1.15661 1.95892 1.22312 0.88174 0.86919 1.05524 1.20718 0.85663 0.88260 0.75770 1.90665 1.19539 1.84146 1.50997 1.45833 1.09927 1.05836 1.73569 1.22440 0.98227 0.79602 0.96270 0.89638 1.23311 0.98783 0.99204 0.96120 1.23583 0.85614 0.90763 0.96754 0.86791 1.22973 0.99396 0.98391 0.96519 1.22836 1.00357 0.96478 0.96266 1.23382 0.89585 0.94214 0.90686 0.87600 1.46738 1.03728 1.72986 1.09697 1.19402 0.83377 1.33908 0.97150 0.89387 1.25429 1.01431 1.02919 0.96390 1.69730 1.34846 1.51437 1.03883 0.85064 0.80624 0.76363 0.77579 1.18853 1.22669 1.23010 1.73757 0.98146 1.15561 1.21829 1.84759 1.10978 1.33797 1.67820 0.87814 0.88047 0.87640 0.80949 0.88752 0.89374 0.86620 0.87905 0.75458 0.94585 0.91800 0.94412 0.91236 0.90066 0.92150 0.94613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.45 71.24 0.74 0.17 16 2 C -0.02 -0.42 7.49 25.04 0.19 -0.23 16 3 C -0.23 -5.24 10.45 22.40 0.23 -5.01 16 4 C 0.01 0.13 7.28 43.58 0.32 0.45 16 5 C 0.14 2.90 6.56 71.23 0.47 3.36 16 6 O -0.38 -9.73 9.37 -129.94 -1.22 -10.95 16 7 C 0.05 1.09 6.42 71.24 0.46 1.54 16 8 C 0.51 15.70 7.91 87.66 0.69 16.39 16 9 O -0.57 -22.47 16.15 16.01 0.26 -22.21 16 10 N -0.70 -21.55 5.07 -434.83 -2.21 -23.75 16 11 C 0.14 4.86 2.80 46.63 0.13 4.99 16 12 H 0.09 2.93 7.23 -2.39 -0.02 2.91 16 13 C -0.13 -5.31 6.23 32.21 0.20 -5.11 16 14 C 0.14 6.24 4.72 46.23 0.22 6.46 16 15 H 0.11 6.10 5.52 -2.39 -0.01 6.09 16 16 C -0.13 -5.05 6.44 32.21 0.21 -4.84 16 17 C -0.12 -3.92 6.44 32.21 0.21 -3.72 16 18 C 0.13 4.53 5.06 46.25 0.23 4.77 16 19 H 0.11 3.37 8.14 -2.39 -0.02 3.35 16 20 N -0.61 -27.53 2.98 -615.22 -1.84 -29.37 16 21 C -0.21 -10.47 10.59 84.03 0.89 -9.58 16 22 H 0.09 4.13 7.83 -2.91 -0.02 4.11 16 23 C -0.07 -3.66 5.50 84.86 0.47 -3.20 16 24 N -0.95 -53.78 10.47 21.65 0.23 -53.55 16 25 Si 0.97 43.34 29.55 68.60 2.03 45.37 16 26 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 27 H -0.30 -13.54 7.11 99.48 0.71 -12.84 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 N -0.39 -9.66 12.07 -49.54 -0.60 -10.26 16 30 O 0.09 2.01 11.20 71.65 0.80 2.82 16 31 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 33 H 0.11 0.62 8.14 -2.39 -0.02 0.61 16 34 H 0.17 3.99 8.05 -2.91 -0.02 3.97 16 35 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 38 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.41 11.65 8.66 -92.71 -0.80 10.85 16 40 H 0.04 1.57 7.98 -2.38 -0.02 1.55 16 41 H 0.06 2.37 7.82 -2.39 -0.02 2.35 16 42 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 2.31 7.82 -2.38 -0.02 2.29 16 44 H 0.08 2.23 7.82 -2.38 -0.02 2.21 16 45 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.24 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -70.73 380.96 3.31 -67.42 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.20 Total: 28.03 kcal Atomic # 6 Polarization: 0.81 SS G_CDS: 5.66 Total: 6.47 kcal Atomic # 7 Polarization: -112.52 SS G_CDS: -4.41 Total: -116.93 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -0.16 Total: -30.35 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -70.73 3.31 -67.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110705981.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.268 kcal (2) G-P(sol) polarization free energy of solvation -70.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds