Wall clock time and date at job start Tue Mar 31 2020 19:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41385 * 126.80041 * 2 1 4 4 C 1.35449 * 103.98568 * 179.74079 * 3 2 1 5 5 C 1.50695 * 126.77537 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47184 * 89.99732 * 5 4 3 7 7 C 1.42899 * 114.00133 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47433 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99309 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00535 * 179.97438 * 10 8 7 12 12 H 1.09012 * 110.55562 * 32.10272 * 11 10 8 13 13 C 1.54856 * 110.63203 * 269.02901 * 11 10 8 14 14 C 1.55840 * 103.44450 * 241.50975 * 13 11 10 15 15 H 1.08996 * 116.12418 * 159.14659 * 14 13 11 16 16 C 1.55848 * 105.06053 * 288.17262 * 14 13 11 17 17 C 1.54848 * 103.44760 * 71.83026 * 16 14 13 18 18 C 1.55839 * 110.63095 * 154.99723 * 11 10 8 19 19 H 1.09002 * 115.56390 * 319.68665 * 18 11 10 20 20 N 1.50236 * 101.05275 * 32.93183 * 14 13 11 21 21 C 1.36944 * 130.83492 * 126.01001 * 20 14 13 22 22 H 1.08001 * 119.99223 * 180.02562 * 21 20 14 23 23 C 1.38803 * 120.00278 * 0.03178 * 21 20 14 24 24 N 1.31629 * 119.99837 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00187 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46812 * 60.00084 * 25 23 21 27 27 H 1.48507 * 109.47035 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46938 * 299.99751 * 25 23 21 29 29 O 1.34037 * 106.44977 * 359.97438 * 4 3 2 30 30 N 1.20927 * 111.56699 * 0.02562 * 29 4 3 31 31 H 1.08994 * 109.47179 * 90.00282 * 1 2 3 32 32 H 1.09004 * 109.47024 * 210.00037 * 1 2 3 33 33 H 1.08997 * 109.47289 * 329.99911 * 1 2 3 34 34 H 1.08003 * 128.00219 * 359.70421 * 3 2 1 35 35 H 1.08995 * 109.47281 * 209.99701 * 5 4 3 36 36 H 1.09005 * 109.47331 * 329.99890 * 5 4 3 37 37 H 1.08999 * 109.47426 * 300.00278 * 7 6 5 38 38 H 1.08997 * 109.47060 * 60.00322 * 7 6 5 39 39 H 0.97002 * 119.99580 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.62045 * 359.97438 * 13 11 10 41 41 H 1.08993 * 110.62386 * 123.01488 * 13 11 10 42 42 H 1.09004 * 110.62522 * 190.31788 * 16 14 13 43 43 H 1.09004 * 110.62704 * 313.17029 * 16 14 13 44 44 H 1.09002 * 110.62174 * 241.50688 * 17 16 14 45 45 H 1.08999 * 110.63083 * 118.48936 * 17 16 14 46 46 H 0.97004 * 119.99639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0059 5 6 4.9020 1.3697 0.0091 6 8 5.3077 1.6140 1.3574 7 6 6.5361 2.3348 1.4733 8 6 6.8654 2.5355 2.9301 9 8 6.1210 2.1041 3.7850 10 7 7.9863 3.1952 3.2831 11 6 8.3061 3.3908 4.6992 12 1 7.9427 2.5520 5.2931 13 6 7.7125 4.7255 5.2134 14 6 8.9694 5.5370 5.6495 15 1 8.8441 6.6178 5.7143 16 6 9.4711 4.8390 6.9494 17 6 10.0649 3.5044 6.4353 18 6 9.8409 3.5777 4.8949 19 1 10.4746 2.9325 4.2864 20 7 9.9844 5.0535 4.6529 21 6 10.7915 5.7452 3.7895 22 1 11.4682 5.2117 3.1384 23 6 10.7399 7.1317 3.7511 24 7 9.9148 7.7818 4.5444 25 14 11.8414 8.0752 2.5738 26 1 11.5396 7.6663 1.1784 27 1 11.5961 9.5319 2.7263 28 1 13.2635 7.7775 2.8804 29 8 3.4538 -0.7252 0.0096 30 7 2.2869 -1.0423 0.0061 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 2.0708 2.1744 -0.0044 35 1 5.6678 0.7849 -0.5004 36 1 4.7669 2.3200 -0.5074 37 1 7.3356 1.7697 0.9942 38 1 6.4353 3.3051 0.9870 39 1 8.5814 3.5405 2.5993 40 1 7.1804 5.2420 4.4144 41 1 7.0542 4.5503 6.0642 42 1 10.2402 5.4395 7.4353 43 1 8.6410 4.6554 7.6316 44 1 9.5288 2.6564 6.8614 45 1 11.1283 3.4430 6.6663 46 1 9.8786 8.7508 4.5173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110707865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:30 Heat of formation + Delta-G solvation = 30.202503 kcal Electronic energy + Delta-G solvation = -28560.542185 eV Core-core repulsion = 24455.398130 eV Total energy + Delta-G solvation = -4105.144055 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -45.15962 -39.89153 -38.77122 -37.55232 -35.04579 -33.80774 -32.91260 -32.56702 -29.48701 -29.14865 -28.97342 -28.55058 -27.41267 -26.02524 -24.21930 -23.33760 -21.58383 -20.57402 -19.96183 -19.80540 -18.71797 -17.99557 -17.74639 -17.05803 -16.84509 -16.69380 -16.38688 -15.51479 -15.18849 -14.84306 -14.57095 -14.14609 -13.93204 -13.69521 -13.66706 -13.49563 -13.34136 -12.98775 -12.69126 -12.55298 -12.07717 -12.01071 -11.84639 -11.43035 -11.25129 -11.15487 -10.98752 -10.93294 -10.54260 -10.38468 -10.27050 -10.16477 -10.05376 -9.95033 -9.83768 -9.64596 -9.26400 -9.17614 -9.00429 -8.50181 -6.99684 -5.79043 -3.18571 1.06307 1.92553 2.63972 2.88506 3.14910 3.31902 3.37077 3.38789 3.91368 3.97109 4.27284 4.36188 4.65636 4.69619 4.86123 4.93646 5.02834 5.05987 5.09033 5.11463 5.14053 5.22720 5.31580 5.45698 5.47633 5.61380 5.67217 5.81477 5.85176 6.02957 6.08081 6.12297 6.27794 6.39682 6.46540 6.58280 6.64841 6.72051 6.80331 6.93331 7.09164 7.29752 7.42219 7.75196 7.93387 7.99816 8.12970 8.56753 9.02406 9.65702 10.47013 11.29731 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.002263 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.505677 B =12367.422858 C =13198.585965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.206 4.206 4 C -0.027 4.027 5 C 0.141 3.859 6 O -0.356 6.356 7 C 0.044 3.956 8 C 0.510 3.490 9 O -0.531 6.531 10 N -0.703 5.703 11 C 0.130 3.870 12 H 0.081 0.919 13 C -0.143 4.143 14 C 0.154 3.846 15 H 0.153 0.847 16 C -0.140 4.140 17 C -0.128 4.128 18 C 0.126 3.874 19 H 0.088 0.912 20 N -0.591 5.591 21 C -0.216 4.216 22 H 0.078 0.922 23 C -0.010 4.010 24 N -0.919 5.919 25 Si 0.916 3.084 26 H -0.286 1.286 27 H -0.290 1.290 28 H -0.286 1.286 29 O 0.108 5.892 30 N -0.361 5.361 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.175 0.825 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.403 0.597 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.055 0.945 43 H 0.048 0.952 44 H 0.052 0.948 45 H 0.057 0.943 46 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.952 -10.552 -9.248 17.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.147 4.147 3 C -0.228 4.228 4 C -0.090 4.090 5 C 0.063 3.937 6 O -0.274 6.274 7 C -0.036 4.036 8 C 0.294 3.706 9 O -0.408 6.408 10 N -0.355 5.355 11 C 0.024 3.976 12 H 0.099 0.901 13 C -0.183 4.183 14 C 0.047 3.953 15 H 0.170 0.830 16 C -0.179 4.179 17 C -0.168 4.168 18 C 0.017 3.983 19 H 0.106 0.894 20 N -0.312 5.312 21 C -0.343 4.343 22 H 0.096 0.904 23 C -0.206 4.206 24 N -0.567 5.567 25 Si 0.746 3.254 26 H -0.213 1.213 27 H -0.216 1.216 28 H -0.213 1.213 29 O 0.039 5.961 30 N -0.065 5.065 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.102 0.898 34 H 0.192 0.808 35 H 0.096 0.904 36 H 0.107 0.893 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.238 0.762 40 H 0.078 0.922 41 H 0.072 0.928 42 H 0.074 0.926 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -11.696 -11.949 -8.604 18.804 hybrid contribution 0.936 1.609 -1.121 2.173 sum -10.759 -10.340 -9.725 17.812 Atomic orbital electron populations 1.20171 0.85753 1.03996 1.03344 1.23642 0.99197 0.88763 1.03113 1.22505 0.91023 1.01383 1.07880 1.23946 0.97450 0.83822 1.03812 1.20655 0.89854 0.97581 0.85580 1.88088 1.39293 1.76225 1.23812 1.22310 0.87441 0.97680 0.96153 1.20038 0.81858 0.78845 0.89862 1.90711 1.48698 1.49592 1.51773 1.45891 1.23636 1.56205 1.09750 1.22661 0.97527 0.97666 0.79751 0.90143 1.23449 0.99253 0.95824 0.99799 1.23763 0.85429 1.00609 0.85490 0.83003 1.23072 0.99252 0.96323 0.99253 1.22870 1.00012 0.97310 0.96566 1.23170 0.92117 0.88391 0.94616 0.89385 1.46546 1.43640 0.98489 1.42552 1.18948 1.14128 0.88682 1.12588 0.90445 1.24712 0.99831 0.96113 0.99945 1.69459 1.39523 1.07076 1.40621 0.86139 0.79998 0.79018 0.80197 1.21312 1.21631 1.21291 1.84825 1.21573 1.22607 1.67045 1.73859 0.89305 1.24178 1.19150 0.90148 0.90484 0.89847 0.80800 0.90382 0.89290 0.89905 0.89767 0.76204 0.92196 0.92766 0.92639 0.93293 0.92951 0.92409 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.47 36.00 0.38 -0.14 16 2 C 0.01 0.12 7.33 -82.10 -0.60 -0.48 16 3 C -0.21 -2.04 11.06 -39.38 -0.44 -2.48 16 4 C -0.03 -0.29 7.12 -35.31 -0.25 -0.54 16 5 C 0.14 1.24 6.50 36.00 0.23 1.47 16 6 O -0.36 -4.65 9.86 -55.14 -0.54 -5.20 16 7 C 0.04 0.50 6.42 36.01 0.23 0.73 16 8 C 0.51 8.25 7.91 -10.99 -0.09 8.16 16 9 O -0.53 -10.91 16.15 -14.36 -0.23 -11.14 16 10 N -0.70 -11.35 5.07 -51.40 -0.26 -11.61 16 11 C 0.13 2.36 2.80 -65.44 -0.18 2.17 16 12 H 0.08 1.49 7.23 -51.92 -0.38 1.12 16 13 C -0.14 -2.85 6.23 -24.24 -0.15 -3.01 16 14 C 0.15 3.40 4.72 -62.80 -0.30 3.11 16 15 H 0.15 3.88 5.52 -51.93 -0.29 3.59 16 16 C -0.14 -2.71 6.44 -24.24 -0.16 -2.86 16 17 C -0.13 -2.27 6.44 -24.24 -0.16 -2.42 16 18 C 0.13 2.35 5.06 -62.81 -0.32 2.04 16 19 H 0.09 1.54 8.14 -51.93 -0.42 1.11 16 20 N -0.59 -13.48 2.99 -145.83 -0.44 -13.91 16 21 C -0.22 -5.41 10.59 -15.06 -0.16 -5.57 16 22 H 0.08 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 24 N -0.92 -25.06 10.47 55.49 0.58 -24.48 16 25 Si 0.92 20.69 29.55 -169.99 -5.02 15.67 16 26 H -0.29 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 29 O 0.11 1.37 11.20 17.18 0.19 1.56 16 30 N -0.36 -4.67 12.07 33.43 0.40 -4.27 16 31 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.17 1.27 8.06 -52.48 -0.42 0.84 16 35 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.40 6.03 8.66 -40.82 -0.35 5.68 16 40 H 0.06 1.28 7.98 -51.93 -0.41 0.87 16 41 H 0.05 1.03 7.82 -51.93 -0.41 0.62 16 42 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.05 0.85 7.82 -51.93 -0.41 0.45 16 44 H 0.05 0.83 7.82 -51.93 -0.41 0.42 16 45 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 46 H 0.25 6.83 8.31 -40.82 -0.34 6.49 16 LS Contribution 381.70 15.07 5.75 5.75 Total: -1.00 -32.76 381.70 -8.46 -41.22 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -6.84 Total: 6.61 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: -2.05 Total: -0.18 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: 0.29 Total: -54.28 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.58 Total: -14.78 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.76 -8.46 -41.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110707865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.420 kcal (2) G-P(sol) polarization free energy of solvation -32.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds