Wall clock time and date at job start Tue Mar 31 2020 19:56:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.41385 * 126.80041 * 2 1 4 4 C 1.35449 * 103.98568 * 179.74079 * 3 2 1 5 5 C 1.50695 * 126.77537 * 180.02562 * 4 3 2 6 6 O 1.42901 * 109.47184 * 89.99732 * 5 4 3 7 7 C 1.42899 * 114.00133 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.47433 * 179.97438 * 7 6 5 9 9 O 1.21287 * 119.99309 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00510 * 180.02562 * 8 7 6 11 11 C 1.46493 * 120.00535 * 179.97438 * 10 8 7 12 12 H 1.09012 * 110.55562 * 32.10272 * 11 10 8 13 13 C 1.54856 * 110.63203 * 269.02901 * 11 10 8 14 14 C 1.55840 * 103.44450 * 241.50975 * 13 11 10 15 15 H 1.08996 * 116.12418 * 159.14659 * 14 13 11 16 16 C 1.55848 * 105.06053 * 288.17262 * 14 13 11 17 17 C 1.54848 * 103.44760 * 71.83026 * 16 14 13 18 18 C 1.55839 * 110.63095 * 154.99723 * 11 10 8 19 19 H 1.09002 * 115.56390 * 319.68665 * 18 11 10 20 20 N 1.50236 * 101.05275 * 32.93183 * 14 13 11 21 21 C 1.36944 * 130.83492 * 126.01001 * 20 14 13 22 22 H 1.08001 * 119.99223 * 180.02562 * 21 20 14 23 23 C 1.38803 * 120.00278 * 0.03178 * 21 20 14 24 24 N 1.31629 * 119.99837 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00187 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.46812 * 60.00084 * 25 23 21 27 27 H 1.48507 * 109.47035 * 179.97438 * 25 23 21 28 28 H 1.48494 * 109.46938 * 299.99751 * 25 23 21 29 29 O 1.34037 * 106.44977 * 359.97438 * 4 3 2 30 30 N 1.20927 * 111.56699 * 0.02562 * 29 4 3 31 31 H 1.08994 * 109.47179 * 90.00282 * 1 2 3 32 32 H 1.09004 * 109.47024 * 210.00037 * 1 2 3 33 33 H 1.08997 * 109.47289 * 329.99911 * 1 2 3 34 34 H 1.08003 * 128.00219 * 359.70421 * 3 2 1 35 35 H 1.08995 * 109.47281 * 209.99701 * 5 4 3 36 36 H 1.09005 * 109.47331 * 329.99890 * 5 4 3 37 37 H 1.08999 * 109.47426 * 300.00278 * 7 6 5 38 38 H 1.08997 * 109.47060 * 60.00322 * 7 6 5 39 39 H 0.97002 * 119.99580 * 359.97438 * 10 8 7 40 40 H 1.09004 * 110.62045 * 359.97438 * 13 11 10 41 41 H 1.08993 * 110.62386 * 123.01488 * 13 11 10 42 42 H 1.09004 * 110.62522 * 190.31788 * 16 14 13 43 43 H 1.09004 * 110.62704 * 313.17029 * 16 14 13 44 44 H 1.09002 * 110.62174 * 241.50688 * 17 16 14 45 45 H 1.08999 * 110.63083 * 118.48936 * 17 16 14 46 46 H 0.97004 * 119.99639 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3539 1.1321 0.0000 4 6 3.6024 0.6069 0.0059 5 6 4.9020 1.3697 0.0091 6 8 5.3077 1.6140 1.3574 7 6 6.5361 2.3348 1.4733 8 6 6.8654 2.5355 2.9301 9 8 6.1210 2.1041 3.7850 10 7 7.9863 3.1952 3.2831 11 6 8.3061 3.3908 4.6992 12 1 7.9427 2.5520 5.2931 13 6 7.7125 4.7255 5.2134 14 6 8.9694 5.5370 5.6495 15 1 8.8441 6.6178 5.7143 16 6 9.4711 4.8390 6.9494 17 6 10.0649 3.5044 6.4353 18 6 9.8409 3.5777 4.8949 19 1 10.4746 2.9325 4.2864 20 7 9.9844 5.0535 4.6529 21 6 10.7915 5.7452 3.7895 22 1 11.4682 5.2117 3.1384 23 6 10.7399 7.1317 3.7511 24 7 9.9148 7.7818 4.5444 25 14 11.8414 8.0752 2.5738 26 1 11.5396 7.6663 1.1784 27 1 11.5961 9.5319 2.7263 28 1 13.2635 7.7775 2.8804 29 8 3.4538 -0.7252 0.0096 30 7 2.2869 -1.0423 0.0061 31 1 -0.3633 -0.0001 -1.0276 32 1 -0.3633 -0.8900 0.5139 33 1 -0.3634 0.8899 0.5138 34 1 2.0708 2.1744 -0.0044 35 1 5.6678 0.7849 -0.5004 36 1 4.7669 2.3200 -0.5074 37 1 7.3356 1.7697 0.9942 38 1 6.4353 3.3051 0.9870 39 1 8.5814 3.5405 2.5993 40 1 7.1804 5.2420 4.4144 41 1 7.0542 4.5503 6.0642 42 1 10.2402 5.4395 7.4353 43 1 8.6410 4.6554 7.6316 44 1 9.5288 2.6564 6.8614 45 1 11.1283 3.4430 6.6663 46 1 9.8786 8.7508 4.5173 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110707865.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:56:29 Heat of formation + Delta-G solvation = 9.503353 kcal Electronic energy + Delta-G solvation = -28561.439767 eV Core-core repulsion = 24455.398130 eV Total energy + Delta-G solvation = -4106.041638 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.96371 -41.29708 -40.06569 -38.59769 -35.79059 -35.26886 -34.38619 -33.68448 -30.94549 -30.78251 -29.98644 -29.61193 -28.56612 -26.94294 -26.02722 -24.11969 -22.98745 -21.51055 -21.44500 -21.14146 -20.28841 -18.83996 -18.81987 -18.64444 -17.84565 -17.75645 -17.25908 -16.83979 -16.62704 -16.10748 -15.83479 -15.50641 -15.31348 -14.92567 -14.61358 -14.28035 -14.21126 -14.00433 -13.72158 -13.62803 -13.56049 -13.30745 -12.87435 -12.82441 -12.77544 -12.76163 -12.63847 -12.16392 -12.08585 -11.96270 -11.88159 -11.68107 -11.18328 -11.00770 -10.92418 -10.89467 -10.80837 -10.69845 -10.50999 -9.93241 -8.84150 -7.71824 -5.12057 0.26649 1.16699 1.52972 1.54971 1.60668 1.65591 1.84754 2.18016 2.53968 3.10645 3.23604 3.41088 3.47235 3.51790 3.79639 3.99086 4.04198 4.10411 4.12382 4.25677 4.27807 4.30179 4.35541 4.44055 4.48157 4.51213 4.57961 4.64702 4.67392 4.72552 4.85567 4.86867 4.87628 4.92629 5.11763 5.19303 5.20867 5.21424 5.40059 5.54854 5.61879 5.71298 5.92777 5.93163 6.30179 6.68331 7.09182 7.20125 7.32397 7.76467 8.62179 9.35329 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.016858 B = 0.002263 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1660.505677 B =12367.422858 C =13198.585965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.005 3.995 3 C -0.210 4.210 4 C -0.039 4.039 5 C 0.139 3.861 6 O -0.393 6.393 7 C 0.051 3.949 8 C 0.505 3.495 9 O -0.581 6.581 10 N -0.700 5.700 11 C 0.140 3.860 12 H 0.082 0.918 13 C -0.133 4.133 14 C 0.140 3.860 15 H 0.116 0.884 16 C -0.134 4.134 17 C -0.121 4.121 18 C 0.129 3.871 19 H 0.107 0.893 20 N -0.609 5.609 21 C -0.212 4.212 22 H 0.088 0.912 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.975 3.025 26 H -0.275 1.275 27 H -0.304 1.304 28 H -0.285 1.285 29 O 0.084 5.916 30 N -0.396 5.396 31 H 0.098 0.902 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.199 0.801 35 H 0.101 0.899 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.112 0.888 39 H 0.411 0.589 40 H 0.038 0.962 41 H 0.061 0.939 42 H 0.037 0.963 43 H 0.068 0.932 44 H 0.079 0.921 45 H 0.060 0.940 46 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.782 -11.468 -10.807 19.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.153 4.153 3 C -0.231 4.231 4 C -0.102 4.102 5 C 0.062 3.938 6 O -0.313 6.313 7 C -0.027 4.027 8 C 0.292 3.708 9 O -0.460 6.460 10 N -0.351 5.351 11 C 0.033 3.967 12 H 0.100 0.900 13 C -0.174 4.174 14 C 0.034 3.966 15 H 0.133 0.867 16 C -0.173 4.173 17 C -0.160 4.160 18 C 0.022 3.978 19 H 0.124 0.876 20 N -0.331 5.331 21 C -0.341 4.341 22 H 0.106 0.894 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.805 3.195 26 H -0.201 1.201 27 H -0.231 1.231 28 H -0.211 1.211 29 O 0.019 5.981 30 N -0.104 5.104 31 H 0.116 0.884 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.216 0.784 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.130 0.870 39 H 0.247 0.753 40 H 0.056 0.944 41 H 0.080 0.920 42 H 0.056 0.944 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.079 0.921 46 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -11.488 -12.897 -10.193 20.055 hybrid contribution 0.824 1.871 -0.611 2.134 sum -10.664 -11.025 -10.804 18.762 Atomic orbital electron populations 1.20339 0.83472 1.04768 1.04703 1.24320 1.00807 0.88592 1.01577 1.22926 0.90632 1.02382 1.07181 1.24507 0.98875 0.83346 1.03505 1.20992 0.89503 0.99200 0.84063 1.88020 1.39999 1.76723 1.26510 1.22333 0.88193 0.99681 0.92539 1.20919 0.80720 0.77341 0.91807 1.90686 1.50095 1.51547 1.53716 1.45823 1.24073 1.56138 1.09049 1.22410 0.96762 0.96308 0.81174 0.90016 1.23305 0.98254 0.96416 0.99407 1.23581 0.86642 0.99281 0.87130 0.86681 1.22979 0.99420 0.96783 0.98158 1.22837 1.00456 0.97037 0.95705 1.23360 0.92614 0.86283 0.95532 0.87554 1.46722 1.43473 1.00441 1.42418 1.19330 1.13594 0.88973 1.12206 0.89385 1.25441 1.01550 0.97236 1.01873 1.69723 1.41351 1.06381 1.42438 0.85190 0.78373 0.76914 0.79024 1.20079 1.23100 1.21116 1.84773 1.21669 1.23783 1.67859 1.73848 0.89783 1.25605 1.21131 0.88398 0.90695 0.88059 0.78353 0.88083 0.86083 0.86324 0.87048 0.75319 0.94358 0.92033 0.94379 0.91385 0.90281 0.92139 0.94590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.47 71.23 0.75 -0.19 16 2 C 0.01 0.11 7.33 43.58 0.32 0.43 16 3 C -0.21 -3.83 11.06 22.40 0.25 -3.58 16 4 C -0.04 -0.79 7.12 25.04 0.18 -0.61 16 5 C 0.14 2.06 6.50 71.23 0.46 2.52 16 6 O -0.39 -9.41 9.86 -129.94 -1.28 -10.69 16 7 C 0.05 1.01 6.42 71.24 0.46 1.47 16 8 C 0.51 15.46 7.91 87.66 0.69 16.16 16 9 O -0.58 -23.47 16.15 15.98 0.26 -23.21 16 10 N -0.70 -21.26 5.07 -434.91 -2.21 -23.47 16 11 C 0.14 4.87 2.80 46.61 0.13 5.00 16 12 H 0.08 2.88 7.23 -2.38 -0.02 2.86 16 13 C -0.13 -5.30 6.23 32.21 0.20 -5.10 16 14 C 0.14 6.27 4.72 46.23 0.22 6.49 16 15 H 0.12 6.12 5.52 -2.39 -0.01 6.11 16 16 C -0.13 -5.11 6.44 32.21 0.21 -4.90 16 17 C -0.12 -4.01 6.44 32.21 0.21 -3.80 16 18 C 0.13 4.57 5.06 46.22 0.23 4.81 16 19 H 0.11 3.38 8.14 -2.39 -0.02 3.36 16 20 N -0.61 -27.33 2.99 -615.28 -1.84 -29.17 16 21 C -0.21 -10.49 10.59 84.03 0.89 -9.60 16 22 H 0.09 4.06 7.83 -2.91 -0.02 4.04 16 23 C -0.07 -3.58 5.50 84.86 0.47 -3.11 16 24 N -0.95 -53.20 10.47 21.65 0.23 -52.98 16 25 Si 0.98 42.60 29.55 68.60 2.03 44.63 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 28 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 29 O 0.08 2.12 11.20 71.65 0.80 2.92 16 30 N -0.40 -10.28 12.07 -49.54 -0.60 -10.88 16 31 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.07 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 35 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.41 11.31 8.66 -92.71 -0.80 10.51 16 40 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 41 H 0.06 2.31 7.82 -2.39 -0.02 2.29 16 42 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 43 H 0.07 2.29 7.82 -2.38 -0.02 2.27 16 44 H 0.08 2.23 7.82 -2.39 -0.02 2.21 16 45 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 46 H 0.24 13.60 8.31 -92.70 -0.77 12.83 16 Total: -1.00 -73.76 381.70 3.25 -70.51 By element: Atomic # 1 Polarization: 26.17 SS G_CDS: 0.20 Total: 26.37 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 5.66 Total: 5.97 kcal Atomic # 7 Polarization: -112.08 SS G_CDS: -4.41 Total: -116.49 kcal Atomic # 8 Polarization: -30.76 SS G_CDS: -0.22 Total: -30.98 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.63 kcal Total: -73.76 3.25 -70.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110707865.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.013 kcal (2) G-P(sol) polarization free energy of solvation -73.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds