Wall clock time and date at job start Tue Mar 31 2020 19:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35278 * 126.70662 * 2 1 4 4 C 1.41927 * 103.95842 * 180.02562 * 3 2 1 5 5 O 1.35714 * 126.87927 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99965 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46846 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00084 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00158 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00250 * 179.97438 * 9 7 6 11 11 C 1.54180 * 112.24790 * 298.12052 * 10 9 7 12 12 C 1.54854 * 104.29959 * 261.20883 * 11 10 9 13 13 C 1.54850 * 102.73734 * 321.86597 * 12 11 10 14 14 C 1.54181 * 104.30121 * 38.13558 * 13 12 11 15 15 H 1.09002 * 111.61405 * 98.40422 * 14 13 12 16 16 C 1.53798 * 109.12763 * 223.08540 * 14 13 12 17 17 N 1.47361 * 106.37397 * 132.67993 * 16 14 13 18 18 C 1.36930 * 126.77459 * 148.78162 * 17 16 14 19 19 H 1.08003 * 120.00152 * 179.97438 * 18 17 16 20 20 C 1.38817 * 120.00195 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99582 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47100 * 59.99697 * 22 20 18 24 24 H 1.48499 * 109.46898 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46963 * 299.99581 * 22 20 18 26 26 C 1.47225 * 106.52211 * 328.76439 * 17 16 14 27 27 N 1.30619 * 106.24684 * 0.24147 * 4 3 2 28 28 O 1.20923 * 111.49144 * 359.57249 * 27 4 3 29 29 H 1.09008 * 109.46881 * 90.00274 * 1 2 3 30 30 H 1.09004 * 109.47058 * 209.99738 * 1 2 3 31 31 H 1.08996 * 109.47702 * 330.00144 * 1 2 3 32 32 H 1.07995 * 128.02068 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.47423 * 60.00154 * 6 5 4 34 34 H 1.08998 * 109.46883 * 299.99239 * 6 5 4 35 35 H 0.96997 * 119.99848 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.46893 * 19.91507 * 11 10 9 37 37 H 1.09005 * 110.47089 * 142.50738 * 11 10 9 38 38 H 1.08998 * 110.76349 * 203.54940 * 12 11 10 39 39 H 1.09004 * 110.91546 * 80.24541 * 12 11 10 40 40 H 1.08998 * 110.46764 * 279.42749 * 13 12 11 41 41 H 1.09008 * 110.46887 * 156.84116 * 13 12 11 42 42 H 1.09001 * 110.07667 * 251.89487 * 16 14 13 43 43 H 1.08998 * 110.07723 * 13.44754 * 16 14 13 44 44 H 0.96998 * 119.99499 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.07875 * 271.98740 * 26 17 16 46 46 H 1.09004 * 110.07486 * 150.49397 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9987 0.4514 -0.0024 7 6 7.1878 1.3772 -0.0025 8 8 7.0211 2.5786 -0.0021 9 7 8.4366 0.8703 -0.0040 10 6 9.5926 1.7703 -0.0046 11 6 9.6388 2.6603 -1.2627 12 6 10.6457 1.9475 -2.1986 13 6 11.7252 1.4366 -1.2130 14 6 10.9267 0.9877 0.0272 15 1 10.7620 -0.0897 0.0303 16 6 11.6514 1.4705 1.2950 17 7 10.6234 2.0878 2.1515 18 6 10.6079 2.1196 3.5203 19 1 9.7953 2.6055 4.0401 20 6 11.6366 1.5274 4.2401 21 7 12.6266 0.9349 3.6067 22 14 11.6158 1.5715 6.1074 23 1 10.3925 0.8923 6.6050 24 1 12.8170 0.8738 6.6324 25 1 11.6211 2.9828 6.5693 26 6 9.6155 2.6646 1.2464 27 7 3.4765 -0.7621 -0.0062 28 8 2.3084 -1.0749 -0.0006 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0310 2.1263 -0.0004 33 1 6.0271 -0.1770 -0.8925 34 1 6.0284 -0.1773 0.8874 35 1 8.5700 -0.0904 -0.0046 36 1 8.6552 2.7118 -1.7295 37 1 9.9945 3.6592 -1.0101 38 1 11.0755 2.6513 -2.9115 39 1 10.1718 1.1147 -2.7181 40 1 12.4143 2.2399 -0.9525 41 1 12.2662 0.5938 -1.6435 42 1 12.1085 0.6252 1.8095 43 1 12.4121 2.2061 1.0340 44 1 13.3452 0.5208 4.1097 45 1 9.8958 3.6821 0.9740 46 1 8.6367 2.6621 1.7262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001111781321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:05 Heat of formation + Delta-G solvation = 25.864446 kcal Electronic energy + Delta-G solvation = -29305.461673 eV Core-core repulsion = 25200.129505 eV Total energy + Delta-G solvation = -4105.332168 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.10598 -40.39477 -39.14853 -37.71529 -34.53384 -34.10867 -33.51236 -32.74215 -31.45172 -29.80372 -28.88560 -28.13309 -27.19787 -24.74151 -24.37946 -23.63053 -22.04805 -21.11119 -20.28002 -19.57191 -18.89328 -18.10890 -18.06428 -17.30641 -16.92621 -16.43471 -16.20459 -15.63139 -15.04118 -14.71151 -14.68990 -14.16841 -13.99593 -13.96221 -13.67254 -13.62966 -13.45991 -13.07921 -12.79846 -12.67184 -12.48347 -11.92468 -11.66613 -11.44445 -11.33664 -11.22882 -10.99892 -10.79027 -10.73175 -10.62294 -10.30706 -10.26250 -9.97172 -9.77461 -9.75708 -9.57837 -9.43602 -9.39372 -8.77107 -8.62431 -6.86670 -5.64411 -3.08856 1.16360 2.06389 2.24346 2.72345 2.85039 3.40394 3.44397 3.45863 3.54246 3.97532 4.47486 4.50821 4.65964 4.68796 4.87053 4.89447 4.92073 4.97355 4.98375 5.02038 5.23863 5.24899 5.37943 5.47926 5.62576 5.67691 5.74759 5.81370 5.87521 5.98573 6.05111 6.09809 6.23392 6.36697 6.45399 6.52836 6.66054 6.74970 6.77874 6.84073 7.12158 7.44441 7.60130 7.69167 7.83215 8.02130 8.37666 8.39102 9.20954 9.81323 10.49080 11.36697 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002938 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.123569 B = 9528.779171 C =11238.513925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.011 4.011 3 C -0.233 4.233 4 C 0.215 3.785 5 O -0.254 6.254 6 C 0.045 3.955 7 C 0.516 3.484 8 O -0.515 6.515 9 N -0.698 5.698 10 C 0.162 3.838 11 C -0.117 4.117 12 C -0.124 4.124 13 C -0.114 4.114 14 C -0.111 4.111 15 H 0.074 0.926 16 C 0.140 3.860 17 N -0.598 5.598 18 C -0.216 4.216 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.923 5.923 22 Si 0.916 3.084 23 H -0.286 1.286 24 H -0.290 1.290 25 H -0.285 1.285 26 C 0.135 3.865 27 N -0.412 5.412 28 O 0.097 5.903 29 H 0.090 0.910 30 H 0.086 0.914 31 H 0.094 0.906 32 H 0.179 0.821 33 H 0.093 0.907 34 H 0.096 0.904 35 H 0.399 0.601 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.123 0.877 43 H 0.013 0.987 44 H 0.253 0.747 45 H 0.028 0.972 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.340 -4.122 -12.455 22.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.075 4.075 3 C -0.254 4.254 4 C 0.017 3.983 5 O -0.159 6.159 6 C -0.034 4.034 7 C 0.299 3.701 8 O -0.390 6.390 9 N -0.350 5.350 10 C 0.076 3.924 11 C -0.156 4.156 12 C -0.162 4.162 13 C -0.152 4.152 14 C -0.132 4.132 15 H 0.093 0.907 16 C 0.014 3.986 17 N -0.321 5.321 18 C -0.344 4.344 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.572 5.572 22 Si 0.746 3.254 23 H -0.212 1.212 24 H -0.215 1.215 25 H -0.212 1.212 26 C 0.007 3.993 27 N -0.140 5.140 28 O 0.037 5.963 29 H 0.109 0.891 30 H 0.105 0.895 31 H 0.112 0.888 32 H 0.196 0.804 33 H 0.111 0.889 34 H 0.114 0.886 35 H 0.233 0.767 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.140 0.860 43 H 0.031 0.969 44 H 0.064 0.936 45 H 0.046 0.954 46 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -17.403 -4.005 -12.219 21.638 hybrid contribution -0.102 0.162 0.969 0.987 sum -17.505 -3.843 -11.251 21.161 Atomic orbital electron populations 1.20373 0.83530 1.04936 1.04325 1.24342 0.96472 0.85640 1.01055 1.21812 0.88334 1.01721 1.13562 1.22084 0.88579 0.87996 0.99616 1.86296 1.09972 1.30739 1.88893 1.22540 0.82444 0.93850 1.04556 1.19751 0.83708 0.89024 0.77576 1.90747 1.85518 1.14845 1.47859 1.45808 1.04425 1.10233 1.74526 1.21789 0.83917 0.90448 0.96272 1.22646 0.99378 0.98752 0.94844 1.22539 0.96776 0.99450 0.97398 1.22465 0.97297 1.00648 0.94803 1.23023 0.93237 0.98688 0.98236 0.90737 1.22088 0.89903 0.99623 0.86951 1.44606 1.22295 1.63933 1.01277 1.19063 1.05724 1.29768 0.79841 0.90558 1.24759 0.96876 1.00910 0.98232 1.69587 1.12320 1.42301 1.33037 0.86126 0.76858 0.77610 0.84785 1.21230 1.21535 1.21192 1.21685 0.94023 0.93969 0.89580 1.74176 0.97841 1.14266 1.27718 1.84788 1.10326 1.31983 1.69176 0.89134 0.89542 0.88779 0.80392 0.88891 0.88605 0.76672 0.91466 0.90544 0.91973 0.92181 0.90998 0.92005 0.85955 0.96867 0.93639 0.95444 0.93366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.26 10.45 36.00 0.38 0.11 16 2 C -0.01 -0.10 7.48 -35.37 -0.26 -0.36 16 3 C -0.23 -2.39 11.11 -39.23 -0.44 -2.82 16 4 C 0.22 2.92 8.01 -16.66 -0.13 2.78 16 5 O -0.25 -3.94 9.74 -38.76 -0.38 -4.31 16 6 C 0.04 0.62 6.14 36.01 0.22 0.84 16 7 C 0.52 8.58 6.91 -10.99 -0.08 8.51 16 8 O -0.51 -10.44 14.08 -14.36 -0.20 -10.64 16 9 N -0.70 -11.09 5.25 -45.83 -0.24 -11.33 16 10 C 0.16 2.95 0.93 -129.89 -0.12 2.83 16 11 C -0.12 -1.92 5.66 -25.14 -0.14 -2.06 16 12 C -0.12 -1.70 6.90 -24.78 -0.17 -1.87 16 13 C -0.11 -1.74 6.36 -25.14 -0.16 -1.90 16 14 C -0.11 -2.03 3.67 -88.69 -0.33 -2.35 16 15 H 0.07 1.27 7.69 -51.93 -0.40 0.87 16 16 C 0.14 3.32 5.78 -3.16 -0.02 3.30 16 17 N -0.60 -15.52 3.40 -170.98 -0.58 -16.10 16 18 C -0.22 -6.12 10.34 -15.06 -0.16 -6.27 16 19 H 0.08 2.13 7.83 -52.48 -0.41 1.72 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.46 16 21 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 22 Si 0.92 22.32 29.55 -169.99 -5.02 17.29 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 25 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 26 C 0.13 3.06 6.00 -3.23 -0.02 3.04 16 27 N -0.41 -5.46 11.54 30.38 0.35 -5.11 16 28 O 0.10 1.07 11.19 17.07 0.19 1.26 16 29 H 0.09 0.20 8.14 -51.92 -0.42 -0.22 16 30 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.09 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.18 1.44 8.06 -52.49 -0.42 1.01 16 33 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 35 H 0.40 5.28 8.28 -40.82 -0.34 4.94 16 36 H 0.07 1.12 6.81 -51.93 -0.35 0.77 16 37 H 0.08 1.30 7.17 -51.93 -0.37 0.93 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 40 H 0.07 1.16 7.17 -51.93 -0.37 0.79 16 41 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 42 H 0.12 3.26 5.46 -51.93 -0.28 2.98 16 43 H 0.01 0.33 7.12 -51.93 -0.37 -0.04 16 44 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 45 H 0.03 0.64 7.12 -51.93 -0.37 0.27 16 46 H 0.05 1.17 6.73 -51.93 -0.35 0.82 16 LS Contribution 370.25 15.07 5.58 5.58 Total: -1.00 -34.21 370.25 -7.82 -42.03 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: -6.56 Total: 4.08 kcal Atomic # 6 Polarization: 4.82 SS G_CDS: -1.52 Total: 3.30 kcal Atomic # 7 Polarization: -58.68 SS G_CDS: 0.09 Total: -58.59 kcal Atomic # 8 Polarization: -13.30 SS G_CDS: -0.39 Total: -13.69 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.21 -7.82 -42.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111781321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.895 kcal (2) G-P(sol) polarization free energy of solvation -34.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds