Wall clock time and date at job start Tue Mar 31 2020 19:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.35278 * 126.70662 * 2 1 4 4 C 1.41927 * 103.95842 * 180.02562 * 3 2 1 5 5 O 1.35714 * 126.87927 * 179.97438 * 4 3 2 6 6 C 1.42901 * 116.99965 * 180.02562 * 5 4 3 7 7 C 1.50701 * 109.46846 * 180.02562 * 6 5 4 8 8 O 1.21284 * 120.00084 * 359.97438 * 7 6 5 9 9 N 1.34775 * 120.00158 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00250 * 179.97438 * 9 7 6 11 11 C 1.54180 * 112.24790 * 298.12052 * 10 9 7 12 12 C 1.54854 * 104.29959 * 261.20883 * 11 10 9 13 13 C 1.54850 * 102.73734 * 321.86597 * 12 11 10 14 14 C 1.54181 * 104.30121 * 38.13558 * 13 12 11 15 15 H 1.09002 * 111.61405 * 98.40422 * 14 13 12 16 16 C 1.53798 * 109.12763 * 223.08540 * 14 13 12 17 17 N 1.47361 * 106.37397 * 132.67993 * 16 14 13 18 18 C 1.36930 * 126.77459 * 148.78162 * 17 16 14 19 19 H 1.08003 * 120.00152 * 179.97438 * 18 17 16 20 20 C 1.38817 * 120.00195 * 359.97438 * 18 17 16 21 21 N 1.31624 * 119.99582 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00190 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47100 * 59.99697 * 22 20 18 24 24 H 1.48499 * 109.46898 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46963 * 299.99581 * 22 20 18 26 26 C 1.47225 * 106.52211 * 328.76439 * 17 16 14 27 27 N 1.30619 * 106.24684 * 0.24147 * 4 3 2 28 28 O 1.20923 * 111.49144 * 359.57249 * 27 4 3 29 29 H 1.09008 * 109.46881 * 90.00274 * 1 2 3 30 30 H 1.09004 * 109.47058 * 209.99738 * 1 2 3 31 31 H 1.08996 * 109.47702 * 330.00144 * 1 2 3 32 32 H 1.07995 * 128.02068 * 359.97438 * 3 2 1 33 33 H 1.08995 * 109.47423 * 60.00154 * 6 5 4 34 34 H 1.08998 * 109.46883 * 299.99239 * 6 5 4 35 35 H 0.96997 * 119.99848 * 359.97438 * 9 7 6 36 36 H 1.08998 * 110.46893 * 19.91507 * 11 10 9 37 37 H 1.09005 * 110.47089 * 142.50738 * 11 10 9 38 38 H 1.08998 * 110.76349 * 203.54940 * 12 11 10 39 39 H 1.09004 * 110.91546 * 80.24541 * 12 11 10 40 40 H 1.08998 * 110.46764 * 279.42749 * 13 12 11 41 41 H 1.09008 * 110.46887 * 156.84116 * 13 12 11 42 42 H 1.09001 * 110.07667 * 251.89487 * 16 14 13 43 43 H 1.08998 * 110.07723 * 13.44754 * 16 14 13 44 44 H 0.96998 * 119.99499 * 180.02562 * 21 20 18 45 45 H 1.09002 * 110.07875 * 271.98740 * 26 17 16 46 46 H 1.09004 * 110.07486 * 150.49397 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3155 1.0845 0.0000 4 6 3.6244 0.5357 -0.0006 5 8 4.7953 1.2219 -0.0013 6 6 5.9987 0.4514 -0.0024 7 6 7.1878 1.3772 -0.0025 8 8 7.0211 2.5786 -0.0021 9 7 8.4366 0.8703 -0.0040 10 6 9.5926 1.7703 -0.0046 11 6 9.6388 2.6603 -1.2627 12 6 10.6457 1.9475 -2.1986 13 6 11.7252 1.4366 -1.2130 14 6 10.9267 0.9877 0.0272 15 1 10.7620 -0.0897 0.0303 16 6 11.6514 1.4705 1.2950 17 7 10.6234 2.0878 2.1515 18 6 10.6079 2.1196 3.5203 19 1 9.7953 2.6055 4.0401 20 6 11.6366 1.5274 4.2401 21 7 12.6266 0.9349 3.6067 22 14 11.6158 1.5715 6.1074 23 1 10.3925 0.8923 6.6050 24 1 12.8170 0.8738 6.6324 25 1 11.6211 2.9828 6.5693 26 6 9.6155 2.6646 1.2464 27 7 3.4765 -0.7621 -0.0062 28 8 2.3084 -1.0749 -0.0006 29 1 -0.3633 0.0000 -1.0278 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3634 0.8899 0.5138 32 1 2.0310 2.1263 -0.0004 33 1 6.0271 -0.1770 -0.8925 34 1 6.0284 -0.1773 0.8874 35 1 8.5700 -0.0904 -0.0046 36 1 8.6552 2.7118 -1.7295 37 1 9.9945 3.6592 -1.0101 38 1 11.0755 2.6513 -2.9115 39 1 10.1718 1.1147 -2.7181 40 1 12.4143 2.2399 -0.9525 41 1 12.2662 0.5938 -1.6435 42 1 12.1085 0.6252 1.8095 43 1 12.4121 2.2061 1.0340 44 1 13.3452 0.5208 4.1097 45 1 9.8958 3.6821 0.9740 46 1 8.6367 2.6621 1.7262 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001111781321.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:04 Heat of formation + Delta-G solvation = 1.691253 kcal Electronic energy + Delta-G solvation = -29306.509901 eV Core-core repulsion = 25200.129505 eV Total energy + Delta-G solvation = -4106.380396 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.96678 -41.81223 -40.37747 -39.07875 -36.36675 -34.89125 -34.78673 -33.59659 -33.43483 -31.26832 -30.29711 -29.02256 -28.44432 -26.36585 -26.21330 -24.50194 -23.33678 -22.29067 -21.86560 -20.92089 -20.36554 -19.17990 -18.95678 -18.90541 -18.01039 -17.82035 -17.33462 -17.11121 -16.82626 -16.13738 -16.05383 -15.50514 -15.35717 -15.06098 -14.91527 -14.65442 -14.34584 -14.13409 -13.99500 -13.91319 -13.46182 -13.24403 -13.21956 -13.10794 -12.82714 -12.78755 -12.53817 -12.33300 -12.13161 -12.06913 -11.90169 -11.79774 -11.70275 -11.45188 -11.27436 -10.92465 -10.81591 -10.52833 -10.29670 -10.13606 -8.95826 -7.79258 -5.27779 0.42907 1.16001 1.18630 1.40537 1.42767 1.45595 1.52293 2.14908 2.40575 2.45560 3.09258 3.25982 3.34968 3.51362 3.58803 3.81552 3.81824 3.91087 3.93151 3.96445 3.97653 4.32909 4.37495 4.39324 4.43797 4.57927 4.69545 4.76640 4.77184 4.79082 4.80105 4.90226 4.92324 5.01575 5.09426 5.19971 5.26066 5.26618 5.38097 5.48203 5.55229 5.62196 5.77095 5.80737 6.32733 6.42388 7.06269 7.08461 7.20397 7.70787 8.38795 9.18474 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011861 B = 0.002938 C = 0.002491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.123569 B = 9528.779171 C =11238.513925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.010 3.990 3 C -0.252 4.252 4 C 0.188 3.812 5 O -0.280 6.280 6 C 0.054 3.946 7 C 0.515 3.485 8 O -0.556 6.556 9 N -0.690 5.690 10 C 0.171 3.829 11 C -0.114 4.114 12 C -0.108 4.108 13 C -0.109 4.109 14 C -0.101 4.101 15 H 0.092 0.908 16 C 0.143 3.857 17 N -0.618 5.618 18 C -0.242 4.242 19 H 0.068 0.932 20 C -0.059 4.059 21 N -0.941 5.941 22 Si 0.980 3.020 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.282 1.282 26 C 0.135 3.865 27 N -0.432 5.432 28 O 0.093 5.907 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.112 0.888 32 H 0.195 0.805 33 H 0.120 0.880 34 H 0.103 0.897 35 H 0.414 0.586 36 H 0.065 0.935 37 H 0.062 0.938 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.058 0.942 41 H 0.089 0.911 42 H 0.095 0.905 43 H -0.008 1.008 44 H 0.251 0.749 45 H 0.014 0.986 46 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.068 -5.492 -13.842 24.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.053 4.053 3 C -0.273 4.273 4 C -0.009 4.009 5 O -0.185 6.185 6 C -0.024 4.024 7 C 0.301 3.699 8 O -0.434 6.434 9 N -0.342 5.342 10 C 0.084 3.916 11 C -0.153 4.153 12 C -0.146 4.146 13 C -0.147 4.147 14 C -0.121 4.121 15 H 0.110 0.890 16 C 0.018 3.982 17 N -0.342 5.342 18 C -0.370 4.370 19 H 0.086 0.914 20 C -0.252 4.252 21 N -0.591 5.591 22 Si 0.807 3.193 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.209 1.209 26 C 0.008 3.992 27 N -0.160 5.160 28 O 0.033 5.967 29 H 0.129 0.871 30 H 0.119 0.881 31 H 0.131 0.869 32 H 0.212 0.788 33 H 0.138 0.862 34 H 0.121 0.879 35 H 0.251 0.749 36 H 0.084 0.916 37 H 0.081 0.919 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.112 0.888 43 H 0.010 0.990 44 H 0.061 0.939 45 H 0.032 0.968 46 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -19.145 -5.410 -13.631 24.117 hybrid contribution 0.339 0.626 1.453 1.618 sum -18.805 -4.784 -12.179 22.910 Atomic orbital electron populations 1.20682 0.79752 1.06554 1.06062 1.25163 0.98102 0.84053 0.98004 1.22178 0.87295 1.03202 1.14674 1.22488 0.88743 0.88657 1.00979 1.86235 1.10878 1.31952 1.89467 1.22473 0.81008 0.92843 1.06124 1.20255 0.84476 0.88881 0.76309 1.90726 1.86142 1.16795 1.49703 1.45669 1.03769 1.10793 1.74018 1.21554 0.84844 0.90391 0.94822 1.22588 1.00268 0.98022 0.94426 1.22489 0.95136 1.00252 0.96676 1.22423 0.97337 1.01266 0.93652 1.22901 0.92848 0.99524 0.96873 0.88972 1.21941 0.89749 0.97741 0.88787 1.44858 1.23585 1.64528 1.01203 1.19306 1.05938 1.30331 0.81459 0.91391 1.25546 0.96515 1.00630 1.02491 1.69834 1.12500 1.42451 1.34271 0.85142 0.76965 0.77570 0.79573 1.20500 1.21142 1.20859 1.21751 0.91938 0.94486 0.90993 1.74152 0.99077 1.14272 1.28492 1.84740 1.10059 1.32926 1.69002 0.87088 0.88080 0.86937 0.78777 0.86196 0.87905 0.74862 0.91614 0.91940 0.89798 0.89887 0.92362 0.89272 0.88775 0.99004 0.93943 0.96786 0.95709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.27 10.45 71.23 0.74 0.47 16 2 C 0.01 0.15 7.48 25.00 0.19 0.34 16 3 C -0.25 -4.92 11.11 22.50 0.25 -4.67 16 4 C 0.19 5.06 8.01 85.79 0.69 5.75 16 5 O -0.28 -8.74 9.74 -71.32 -0.69 -9.43 16 6 C 0.05 1.46 6.14 71.24 0.44 1.90 16 7 C 0.52 17.19 6.91 87.66 0.61 17.80 16 8 O -0.56 -23.16 14.08 16.00 0.23 -22.94 16 9 N -0.69 -21.49 5.25 -417.29 -2.19 -23.68 16 10 C 0.17 6.21 0.93 4.85 0.00 6.21 16 11 C -0.11 -3.63 5.66 31.63 0.18 -3.45 16 12 C -0.11 -2.63 6.90 31.86 0.22 -2.41 16 13 C -0.11 -3.09 6.36 31.63 0.20 -2.89 16 14 C -0.10 -3.61 3.67 -9.54 -0.03 -3.65 16 15 H 0.09 2.97 7.69 -2.39 -0.02 2.96 16 16 C 0.14 6.98 5.78 86.48 0.50 7.48 16 17 N -0.62 -33.38 3.40 -694.86 -2.36 -35.74 16 18 C -0.24 -14.21 10.34 84.04 0.87 -13.34 16 19 H 0.07 3.98 7.83 -2.91 -0.02 3.95 16 20 C -0.06 -3.39 5.49 84.86 0.47 -2.93 16 21 N -0.94 -55.51 10.09 21.65 0.22 -55.30 16 22 Si 0.98 46.58 29.55 68.60 2.03 48.61 16 23 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 24 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 26 C 0.14 6.40 6.00 86.51 0.52 6.92 16 27 N -0.43 -11.17 11.54 -172.59 -1.99 -13.16 16 28 O 0.09 1.93 11.19 71.27 0.80 2.72 16 29 H 0.11 0.06 8.14 -2.38 -0.02 0.04 16 30 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 32 H 0.20 2.92 8.06 -2.91 -0.02 2.90 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.41 10.31 8.28 -92.71 -0.77 9.54 16 36 H 0.07 2.13 6.81 -2.39 -0.02 2.11 16 37 H 0.06 2.15 7.17 -2.38 -0.02 2.13 16 38 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 40 H 0.06 1.83 7.17 -2.39 -0.02 1.81 16 41 H 0.09 2.09 8.14 -2.38 -0.02 2.07 16 42 H 0.09 5.18 5.46 -2.39 -0.01 5.17 16 43 H -0.01 -0.41 7.12 -2.39 -0.02 -0.43 16 44 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 45 H 0.01 0.71 7.12 -2.39 -0.02 0.69 16 46 H 0.02 1.26 6.73 -2.38 -0.02 1.24 16 Total: -1.00 -78.33 370.25 2.12 -76.22 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.25 Total: 19.17 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: 5.83 Total: 13.53 kcal Atomic # 7 Polarization: -121.56 SS G_CDS: -6.32 Total: -127.88 kcal Atomic # 8 Polarization: -29.97 SS G_CDS: 0.33 Total: -29.64 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.33 2.12 -76.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001111781321.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.906 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds