Wall clock time and date at job start Tue Mar 31 2020 19:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35128 * 125.61547 * 2 1 4 4 C 1.40370 * 107.11602 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.65048 * 180.02562 * 4 3 2 6 6 C 1.36546 * 106.70263 * 0.02562 * 4 3 2 7 7 C 1.46666 * 125.98355 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00044 * 7.40045 * 7 6 4 9 9 N 1.34775 * 119.99762 * 187.40811 * 7 6 4 10 10 C 1.47079 * 120.88204 * 6.41912 * 9 7 6 11 11 C 1.53237 * 108.52236 * 128.83819 * 10 9 7 12 12 N 1.46900 * 109.33866 * 53.82729 * 11 10 9 13 13 C 1.46904 * 110.99850 * 172.74500 * 12 11 10 14 14 C 1.50694 * 109.47035 * 64.69335 * 13 12 11 15 15 O 1.21301 * 119.99958 * 354.30190 * 14 13 12 16 16 N 1.34780 * 120.00193 * 174.30083 * 14 13 12 17 17 C 1.37092 * 119.99878 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00689 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99967 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46626 * 60.00636 * 21 19 17 23 23 H 1.48502 * 109.47052 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47033 * 300.00538 * 21 19 17 25 25 C 1.46894 * 111.27000 * 296.89665 * 12 11 10 26 26 C 1.47077 * 120.88136 * 186.44006 * 9 7 6 27 27 O 1.33934 * 125.61709 * 180.29175 * 2 1 3 28 28 H 1.08993 * 109.46785 * 90.00058 * 1 2 3 29 29 H 1.08997 * 109.46903 * 210.00452 * 1 2 3 30 30 H 1.08999 * 109.46713 * 330.00115 * 1 2 3 31 31 H 1.08003 * 126.44747 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47255 * 269.96234 * 5 4 3 33 33 H 1.09005 * 109.47047 * 29.95674 * 5 4 3 34 34 H 1.08991 * 109.47620 * 149.95427 * 5 4 3 35 35 H 1.09001 * 109.62933 * 9.12704 * 10 9 7 36 36 H 1.08996 * 109.62741 * 248.54619 * 10 9 7 37 37 H 1.09003 * 109.49495 * 173.78885 * 11 10 9 38 38 H 1.08994 * 109.49410 * 293.86891 * 11 10 9 39 39 H 1.09005 * 109.46888 * 184.68923 * 13 12 11 40 40 H 1.09001 * 109.47483 * 304.68943 * 13 12 11 41 41 H 0.96998 * 119.99883 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99988 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.49515 * 183.06420 * 25 12 11 44 44 H 1.09004 * 109.49698 * 303.14410 * 25 12 11 45 45 H 1.09008 * 109.62680 * 111.44816 * 26 9 7 46 46 H 1.09005 * 109.79026 * 350.97240 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8618 1.5143 -0.0003 6 6 3.5823 -0.7117 -0.0015 7 6 4.7415 -1.6102 -0.0029 8 8 5.8627 -1.1570 0.1324 9 7 4.5648 -2.9377 -0.1542 10 6 3.2373 -3.4928 -0.4588 11 6 3.3638 -4.4188 -1.6732 12 7 4.4106 -5.4170 -1.4168 13 6 4.4462 -6.4279 -2.4821 14 6 4.8438 -5.7751 -3.7809 15 8 4.9740 -4.5705 -3.8393 16 7 5.0547 -6.5297 -4.8775 17 6 5.4158 -5.9357 -6.0592 18 1 5.5317 -4.8632 -6.1112 19 6 5.6338 -6.7137 -7.1897 20 7 5.4933 -8.0187 -7.1263 21 14 6.1252 -5.9043 -8.8000 22 1 7.4043 -5.1726 -8.6160 23 1 6.2957 -6.9453 -9.8453 24 1 5.0657 -4.9518 -9.2187 25 6 5.7241 -4.7810 -1.2503 26 6 5.6944 -3.8698 -0.0187 27 8 2.2870 -1.0888 -0.0055 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1261 0.0004 32 1 5.1601 1.7220 -1.0278 33 1 4.6513 2.4522 0.5136 34 1 5.6684 0.9916 0.5137 35 1 2.5451 -2.6823 -0.6869 36 1 2.8722 -4.0597 0.3975 37 1 2.4136 -4.9242 -1.8458 38 1 3.6287 -3.8316 -2.5524 39 1 5.1722 -7.1998 -2.2263 40 1 3.4594 -6.8783 -2.5889 41 1 4.9502 -7.4929 -4.8309 42 1 5.6451 -8.5618 -7.9156 43 1 6.4858 -5.5491 -1.1162 44 1 5.9563 -4.1886 -2.1354 45 1 5.5655 -4.4731 0.8801 46 1 6.6282 -3.3112 0.0462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112756090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:41 Heat of formation + Delta-G solvation = -36.262516 kcal Electronic energy + Delta-G solvation = -29595.164055 eV Core-core repulsion = 25487.137860 eV Total energy + Delta-G solvation = -4108.026195 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.91001 -39.98930 -38.80415 -37.04609 -34.76992 -34.07325 -33.58145 -32.66591 -31.36690 -31.01185 -29.04299 -28.10621 -27.20210 -25.50921 -23.84711 -23.60411 -21.86646 -21.57359 -20.19388 -19.50661 -19.07889 -17.97795 -17.36568 -16.75438 -16.20097 -16.07138 -15.57044 -15.02080 -14.86931 -14.75204 -14.54901 -14.23132 -13.91536 -13.82831 -13.65682 -13.56994 -13.36437 -13.29292 -13.07920 -12.92915 -12.81627 -12.50200 -11.98846 -11.82094 -11.75712 -11.53247 -11.51628 -11.18694 -10.91870 -10.81317 -10.66091 -10.49319 -10.28894 -10.01006 -9.73408 -9.51388 -9.30208 -8.77630 -8.41948 -8.04248 -7.48283 -6.49304 -3.90748 0.97251 2.17807 2.46548 3.02195 3.14101 3.20135 3.21154 3.25607 3.77850 4.11617 4.26164 4.33800 4.55765 4.66146 4.92387 4.99983 5.12160 5.13748 5.14530 5.22327 5.26840 5.35496 5.38097 5.48745 5.50400 5.55618 5.64667 5.65823 5.76001 5.87240 5.93557 5.96246 6.00442 6.02147 6.13857 6.17850 6.34709 6.47925 6.56420 6.65272 6.79277 7.18598 7.32686 7.43193 7.47455 7.96711 8.08057 8.51494 9.09047 9.44671 9.95310 10.67085 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.002808 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.716157 B = 9968.244883 C =10331.520562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.012 3.988 3 C -0.223 4.223 4 C -0.085 4.085 5 C -0.096 4.096 6 C -0.080 4.080 7 C 0.604 3.396 8 O -0.526 6.526 9 N -0.597 5.597 10 C 0.107 3.893 11 C 0.025 3.975 12 N -0.513 5.513 13 C 0.042 3.958 14 C 0.404 3.596 15 O -0.594 6.594 16 N -0.554 5.554 17 C -0.304 4.304 18 H 0.102 0.898 19 C 0.025 3.975 20 N -0.898 5.898 21 Si 0.930 3.070 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.273 1.273 25 C 0.023 3.977 26 C 0.122 3.878 27 O -0.155 6.155 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.153 0.847 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.088 0.912 35 H 0.101 0.899 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.393 0.607 42 H 0.273 0.727 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.071 0.929 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.032 10.729 16.021 21.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.040 4.040 3 C -0.242 4.242 4 C -0.088 4.088 5 C -0.153 4.153 6 C -0.132 4.132 7 C 0.392 3.608 8 O -0.405 6.405 9 N -0.329 5.329 10 C -0.015 4.015 11 C -0.104 4.104 12 N -0.236 5.236 13 C -0.090 4.090 14 C 0.189 3.811 15 O -0.481 6.481 16 N -0.189 5.189 17 C -0.433 4.433 18 H 0.120 0.880 19 C -0.177 4.177 20 N -0.539 5.539 21 Si 0.757 3.243 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.199 1.199 25 C -0.105 4.105 26 C 0.000 4.000 27 O -0.052 6.052 28 H 0.105 0.895 29 H 0.099 0.901 30 H 0.109 0.891 31 H 0.171 0.829 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.090 0.910 37 H 0.096 0.904 38 H 0.099 0.901 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.226 0.774 42 H 0.083 0.917 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.089 0.911 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.518 11.028 16.341 21.475 hybrid contribution 0.230 0.088 -1.742 1.760 sum -8.287 11.115 14.599 20.134 Atomic orbital electron populations 1.20406 0.84692 1.04331 1.04016 1.22881 0.94395 0.84658 1.02067 1.21434 0.91857 0.99668 1.11210 1.20592 0.96351 0.92165 0.99689 1.20442 0.94048 0.97837 1.02953 1.21804 0.81842 0.94042 1.15475 1.16630 0.85987 0.81074 0.77094 1.90805 1.22522 1.75315 1.51874 1.47986 1.10876 1.05275 1.68775 1.22240 0.83397 0.97698 0.98200 1.22672 0.95395 0.94376 0.97959 1.62464 1.05308 1.14576 1.41274 1.22056 1.02959 0.95117 0.88856 1.21083 0.85470 0.88248 0.86273 1.90434 1.58269 1.14444 1.84948 1.42040 1.58756 1.09526 1.08627 1.19664 1.43212 0.94388 0.86081 0.88048 1.25285 0.97243 0.95318 0.99860 1.69601 1.48918 1.04115 1.31232 0.85926 0.79346 0.78484 0.80543 1.19830 1.20855 1.19871 1.22689 0.91269 0.97888 0.98678 1.21769 0.89521 0.90452 0.98272 1.84196 1.16067 1.33722 1.71195 0.89523 0.90145 0.89139 0.82928 0.90840 0.91592 0.89286 0.88169 0.91017 0.90441 0.90054 0.89188 0.89163 0.77355 0.91667 0.90313 0.90050 0.91054 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.47 10.41 36.01 0.37 -0.09 16 2 C 0.01 0.12 7.31 -35.41 -0.26 -0.14 16 3 C -0.22 -2.39 10.73 -39.89 -0.43 -2.81 16 4 C -0.09 -1.13 6.20 -104.43 -0.65 -1.77 16 5 C -0.10 -1.14 9.90 36.00 0.36 -0.78 16 6 C -0.08 -1.19 6.77 -36.79 -0.25 -1.44 16 7 C 0.60 10.00 7.66 -12.86 -0.10 9.90 16 8 O -0.53 -9.65 14.18 5.20 0.07 -9.58 16 9 N -0.60 -9.29 3.01 -174.01 -0.52 -9.81 16 10 C 0.11 1.49 6.24 -3.60 -0.02 1.47 16 11 C 0.02 0.39 5.21 -3.70 -0.02 0.37 16 12 N -0.51 -8.30 4.83 -235.77 -1.14 -9.44 16 13 C 0.04 0.71 5.84 -4.98 -0.03 0.68 16 14 C 0.40 9.09 7.18 -10.99 -0.08 9.01 16 15 O -0.59 -15.18 11.25 5.54 0.06 -15.12 16 16 N -0.55 -13.68 5.29 -10.96 -0.06 -13.74 16 17 C -0.30 -8.34 9.68 -14.94 -0.14 -8.49 16 18 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 19 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 20 N -0.90 -24.09 13.05 55.50 0.72 -23.37 16 21 Si 0.93 20.93 29.55 -169.99 -5.02 15.91 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 C 0.02 0.39 5.12 -3.71 -0.02 0.37 16 26 C 0.12 1.81 6.61 -3.61 -0.02 1.78 16 27 O -0.15 -1.99 7.26 5.01 0.04 -1.96 16 28 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.15 1.21 8.06 -52.48 -0.42 0.79 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.09 1.19 6.32 -51.93 -0.33 0.87 16 35 H 0.10 1.36 4.35 -52.65 -0.23 1.13 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.08 1.11 8.06 -51.93 -0.42 0.70 16 38 H 0.08 1.65 5.74 -51.93 -0.30 1.35 16 39 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 41 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 42 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.08 1.20 8.11 -51.93 -0.42 0.78 16 44 H 0.08 1.71 5.73 -51.93 -0.30 1.41 16 45 H 0.07 0.92 8.14 -51.92 -0.42 0.50 16 46 H 0.09 1.42 7.05 -51.93 -0.37 1.06 16 LS Contribution 370.09 15.07 5.58 5.58 Total: -1.00 -32.36 370.09 -8.07 -40.43 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: -6.42 Total: 12.47 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: -1.38 Total: 8.63 kcal Atomic # 7 Polarization: -55.36 SS G_CDS: -1.00 Total: -56.36 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: 0.17 Total: -26.66 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -32.36 -8.07 -40.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112756090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.164 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds