Wall clock time and date at job start Tue Mar 31 2020 19:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35128 * 125.61547 * 2 1 4 4 C 1.40370 * 107.11602 * 180.02562 * 3 2 1 5 5 C 1.50696 * 126.65048 * 180.02562 * 4 3 2 6 6 C 1.36546 * 106.70263 * 0.02562 * 4 3 2 7 7 C 1.46666 * 125.98355 * 179.97438 * 6 4 3 8 8 O 1.21693 * 120.00044 * 7.40045 * 7 6 4 9 9 N 1.34775 * 119.99762 * 187.40811 * 7 6 4 10 10 C 1.47079 * 120.88204 * 6.41912 * 9 7 6 11 11 C 1.53237 * 108.52236 * 128.83819 * 10 9 7 12 12 N 1.46900 * 109.33866 * 53.82729 * 11 10 9 13 13 C 1.46904 * 110.99850 * 172.74500 * 12 11 10 14 14 C 1.50694 * 109.47035 * 64.69335 * 13 12 11 15 15 O 1.21301 * 119.99958 * 354.30190 * 14 13 12 16 16 N 1.34780 * 120.00193 * 174.30083 * 14 13 12 17 17 C 1.37092 * 119.99878 * 179.97438 * 16 14 13 18 18 H 1.07997 * 120.00689 * 0.02562 * 17 16 14 19 19 C 1.38951 * 119.99967 * 179.97438 * 17 16 14 20 20 N 1.31411 * 119.99896 * 0.02562 * 19 17 16 21 21 Si 1.86805 * 120.00351 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46626 * 60.00636 * 21 19 17 23 23 H 1.48502 * 109.47052 * 180.02562 * 21 19 17 24 24 H 1.48499 * 109.47033 * 300.00538 * 21 19 17 25 25 C 1.46894 * 111.27000 * 296.89665 * 12 11 10 26 26 C 1.47077 * 120.88136 * 186.44006 * 9 7 6 27 27 O 1.33934 * 125.61709 * 180.29175 * 2 1 3 28 28 H 1.08993 * 109.46785 * 90.00058 * 1 2 3 29 29 H 1.08997 * 109.46903 * 210.00452 * 1 2 3 30 30 H 1.08999 * 109.46713 * 330.00115 * 1 2 3 31 31 H 1.08003 * 126.44747 * 0.02562 * 3 2 1 32 32 H 1.08995 * 109.47255 * 269.96234 * 5 4 3 33 33 H 1.09005 * 109.47047 * 29.95674 * 5 4 3 34 34 H 1.08991 * 109.47620 * 149.95427 * 5 4 3 35 35 H 1.09001 * 109.62933 * 9.12704 * 10 9 7 36 36 H 1.08996 * 109.62741 * 248.54619 * 10 9 7 37 37 H 1.09003 * 109.49495 * 173.78885 * 11 10 9 38 38 H 1.08994 * 109.49410 * 293.86891 * 11 10 9 39 39 H 1.09005 * 109.46888 * 184.68923 * 13 12 11 40 40 H 1.09001 * 109.47483 * 304.68943 * 13 12 11 41 41 H 0.96998 * 119.99883 * 0.02562 * 16 14 13 42 42 H 0.97007 * 119.99988 * 179.97438 * 20 19 17 43 43 H 1.09003 * 109.49515 * 183.06420 * 25 12 11 44 44 H 1.09004 * 109.49698 * 303.14410 * 25 12 11 45 45 H 1.09008 * 109.62680 * 111.44816 * 26 9 7 46 46 H 1.09005 * 109.79026 * 350.97240 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0985 0.0000 4 6 3.6251 0.6531 -0.0006 5 6 4.8618 1.5143 -0.0003 6 6 3.5823 -0.7117 -0.0015 7 6 4.7415 -1.6102 -0.0029 8 8 5.8627 -1.1570 0.1324 9 7 4.5648 -2.9377 -0.1542 10 6 3.2373 -3.4928 -0.4588 11 6 3.3638 -4.4188 -1.6732 12 7 4.4106 -5.4170 -1.4168 13 6 4.4462 -6.4279 -2.4821 14 6 4.8438 -5.7751 -3.7809 15 8 4.9740 -4.5705 -3.8393 16 7 5.0547 -6.5297 -4.8775 17 6 5.4158 -5.9357 -6.0592 18 1 5.5317 -4.8632 -6.1112 19 6 5.6338 -6.7137 -7.1897 20 7 5.4933 -8.0187 -7.1263 21 14 6.1252 -5.9043 -8.8000 22 1 7.4043 -5.1726 -8.6160 23 1 6.2957 -6.9453 -9.8453 24 1 5.0657 -4.9518 -9.2187 25 6 5.7241 -4.7810 -1.2503 26 6 5.6944 -3.8698 -0.0187 27 8 2.2870 -1.0888 -0.0055 28 1 -0.3633 0.0000 -1.0276 29 1 -0.3633 -0.8899 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 1.9613 2.1261 0.0004 32 1 5.1601 1.7220 -1.0278 33 1 4.6513 2.4522 0.5136 34 1 5.6684 0.9916 0.5137 35 1 2.5451 -2.6823 -0.6869 36 1 2.8722 -4.0597 0.3975 37 1 2.4136 -4.9242 -1.8458 38 1 3.6287 -3.8316 -2.5524 39 1 5.1722 -7.1998 -2.2263 40 1 3.4594 -6.8783 -2.5889 41 1 4.9502 -7.4929 -4.8309 42 1 5.6451 -8.5618 -7.9156 43 1 6.4858 -5.5491 -1.1162 44 1 5.9563 -4.1886 -2.1354 45 1 5.5655 -4.4731 0.8801 46 1 6.6282 -3.3112 0.0462 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112756090.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:40 Heat of formation + Delta-G solvation = -59.542509 kcal Electronic energy + Delta-G solvation = -29596.173551 eV Core-core repulsion = 25487.137860 eV Total energy + Delta-G solvation = -4109.035691 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.83655 -41.33679 -40.35733 -38.53153 -36.26409 -35.52417 -34.90353 -33.46418 -33.33814 -32.21530 -30.40532 -28.93872 -28.32748 -27.13189 -25.41068 -24.83546 -23.05226 -22.47356 -21.46022 -21.02339 -20.36554 -19.83490 -18.61206 -17.79116 -17.73753 -17.44163 -16.63778 -16.60663 -16.25538 -16.14579 -16.00201 -15.71274 -15.44065 -15.25359 -14.99119 -14.54706 -14.45736 -14.15301 -14.09146 -13.79979 -13.68711 -13.60794 -13.32430 -13.22536 -13.18351 -12.98835 -12.78955 -12.58722 -12.49499 -12.23022 -12.15460 -12.11065 -12.04331 -11.42666 -11.20277 -11.03082 -10.65659 -10.03254 -9.98021 -9.41325 -9.06825 -8.50071 -5.99869 -0.04696 1.30308 1.33986 1.37093 1.47471 1.49442 1.90892 1.98394 2.05680 2.25513 2.93069 3.16007 3.22635 3.37558 3.71004 3.75311 3.90617 3.98582 4.11989 4.28796 4.31669 4.36433 4.44129 4.49877 4.53199 4.55628 4.59560 4.65640 4.66768 4.70052 4.72466 4.73905 4.86952 4.97076 5.06344 5.13385 5.21161 5.26702 5.34882 5.37120 5.52406 5.74419 5.88607 5.95044 5.98187 6.23776 6.55221 6.86814 7.08144 7.51502 8.07330 8.65116 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.002808 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.716157 B = 9968.244883 C =10331.520562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.022 3.978 3 C -0.231 4.231 4 C -0.090 4.090 5 C -0.095 4.095 6 C -0.120 4.120 7 C 0.595 3.405 8 O -0.559 6.559 9 N -0.604 5.604 10 C 0.114 3.886 11 C 0.027 3.973 12 N -0.496 5.496 13 C 0.051 3.949 14 C 0.405 3.595 15 O -0.626 6.626 16 N -0.568 5.568 17 C -0.336 4.336 18 H 0.074 0.926 19 C -0.009 4.009 20 N -0.916 5.916 21 Si 0.988 3.012 22 H -0.275 1.275 23 H -0.268 1.268 24 H -0.273 1.273 25 C 0.028 3.972 26 C 0.126 3.874 27 O -0.162 6.162 28 H 0.098 0.902 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.183 0.817 32 H 0.070 0.930 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.099 0.901 38 H 0.035 0.965 39 H 0.115 0.885 40 H 0.118 0.882 41 H 0.397 0.603 42 H 0.279 0.721 43 H 0.094 0.906 44 H 0.032 0.968 45 H 0.100 0.900 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.206 10.785 17.125 23.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.030 4.030 3 C -0.250 4.250 4 C -0.093 4.093 5 C -0.152 4.152 6 C -0.171 4.171 7 C 0.385 3.615 8 O -0.441 6.441 9 N -0.335 5.335 10 C -0.007 4.007 11 C -0.102 4.102 12 N -0.218 5.218 13 C -0.081 4.081 14 C 0.192 3.808 15 O -0.514 6.514 16 N -0.204 5.204 17 C -0.465 4.465 18 H 0.092 0.908 19 C -0.209 4.209 20 N -0.557 5.557 21 Si 0.812 3.188 22 H -0.200 1.200 23 H -0.192 1.192 24 H -0.198 1.198 25 C -0.101 4.101 26 C 0.004 3.996 27 O -0.060 6.060 28 H 0.116 0.884 29 H 0.109 0.891 30 H 0.135 0.865 31 H 0.201 0.799 32 H 0.089 0.911 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.123 0.877 36 H 0.116 0.884 37 H 0.117 0.883 38 H 0.053 0.947 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.231 0.769 42 H 0.088 0.912 43 H 0.112 0.888 44 H 0.050 0.950 45 H 0.118 0.882 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -10.712 11.058 17.462 23.280 hybrid contribution 0.819 0.164 -2.025 2.191 sum -9.893 11.223 15.437 21.497 Atomic orbital electron populations 1.20674 0.81275 1.06180 1.05240 1.23835 0.96131 0.83877 0.99132 1.21792 0.90493 1.01340 1.11353 1.21001 0.97974 0.91954 0.98388 1.20445 0.93161 0.98722 1.02831 1.21552 0.82234 0.94297 1.19025 1.16966 0.86379 0.81514 0.76626 1.90768 1.23869 1.75910 1.53518 1.48140 1.11570 1.05266 1.68500 1.22275 0.82846 0.97581 0.98025 1.22654 0.96075 0.94289 0.97173 1.62567 1.04982 1.14318 1.39961 1.22191 1.04982 0.95352 0.85579 1.22213 0.83223 0.87870 0.87457 1.90458 1.58814 1.16332 1.85802 1.42098 1.59949 1.09759 1.08608 1.19563 1.45420 0.93499 0.88062 0.90844 1.25983 0.96758 0.95878 1.02304 1.69652 1.49046 1.04764 1.32205 0.85064 0.78681 0.77904 0.77148 1.20029 1.19181 1.19807 1.22604 0.91993 0.97973 0.97499 1.21750 0.89325 0.90189 0.98314 1.84142 1.15479 1.34849 1.71534 0.88373 0.89109 0.86492 0.79935 0.91140 0.88679 0.91383 0.87744 0.88436 0.88259 0.94715 0.86750 0.86402 0.76874 0.91172 0.88762 0.94958 0.88217 0.89800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.41 71.24 0.74 0.08 16 2 C 0.02 0.41 7.31 24.97 0.18 0.59 16 3 C -0.23 -4.48 10.73 22.07 0.24 -4.24 16 4 C -0.09 -2.37 6.20 -19.74 -0.12 -2.49 16 5 C -0.10 -2.27 9.90 71.23 0.71 -1.57 16 6 C -0.12 -3.60 6.77 24.08 0.16 -3.44 16 7 C 0.59 20.49 7.66 86.44 0.66 21.15 16 8 O -0.56 -21.75 14.18 -4.32 -0.06 -21.81 16 9 N -0.60 -18.99 3.01 -822.67 -2.48 -21.46 16 10 C 0.11 3.08 6.24 86.35 0.54 3.62 16 11 C 0.03 0.84 5.21 86.38 0.45 1.29 16 12 N -0.50 -15.44 4.83 -899.84 -4.35 -19.78 16 13 C 0.05 1.65 5.84 85.55 0.50 2.15 16 14 C 0.41 18.57 7.18 87.65 0.63 19.20 16 15 O -0.63 -33.50 11.25 -3.09 -0.03 -33.54 16 16 N -0.57 -28.59 5.29 -306.98 -1.62 -30.21 16 17 C -0.34 -19.03 9.68 84.04 0.81 -18.21 16 18 H 0.07 4.49 7.16 -2.91 -0.02 4.47 16 19 C -0.01 -0.47 5.50 84.93 0.47 0.00 16 20 N -0.92 -49.10 13.05 21.66 0.28 -48.81 16 21 Si 0.99 43.20 29.55 68.60 2.03 45.22 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 24 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 25 C 0.03 0.94 5.12 86.38 0.44 1.39 16 26 C 0.13 3.74 6.61 86.35 0.57 4.31 16 27 O -0.16 -4.04 7.26 -4.99 -0.04 -4.07 16 28 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 32 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 33 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.07 1.92 6.32 -2.39 -0.02 1.91 16 35 H 0.11 2.77 4.35 -13.74 -0.06 2.71 16 36 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 37 H 0.10 2.67 8.06 -2.39 -0.02 2.65 16 38 H 0.03 1.45 5.74 -2.39 -0.01 1.44 16 39 H 0.11 3.25 8.14 -2.38 -0.02 3.23 16 40 H 0.12 3.28 8.07 -2.39 -0.02 3.26 16 41 H 0.40 18.94 7.90 -92.71 -0.73 18.20 16 42 H 0.28 14.02 8.31 -92.70 -0.77 13.25 16 43 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 44 H 0.03 1.43 5.73 -2.38 -0.01 1.41 16 45 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 46 H 0.08 2.65 7.05 -2.38 -0.02 2.63 16 Total: -1.00 -74.48 370.09 0.96 -73.52 By element: Atomic # 1 Polarization: 36.87 SS G_CDS: 0.24 Total: 37.11 kcal Atomic # 6 Polarization: 16.85 SS G_CDS: 6.98 Total: 23.83 kcal Atomic # 7 Polarization: -112.11 SS G_CDS: -8.16 Total: -120.27 kcal Atomic # 8 Polarization: -59.29 SS G_CDS: -0.13 Total: -59.42 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -74.48 0.96 -73.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112756090.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.981 kcal (2) G-P(sol) polarization free energy of solvation -74.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds