Wall clock time and date at job start Tue Mar 31 2020 19:03:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41377 * 126.58355 * 2 1 4 4 C 1.34513 * 106.84156 * 180.23233 * 3 2 1 5 5 O 1.34308 * 108.42139 * 359.77643 * 4 3 2 6 6 C 1.34300 * 109.47319 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.78840 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.02645 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.47083 * 120.87903 * 359.71565 * 10 8 7 12 12 C 1.53695 * 108.27426 * 128.75696 * 11 10 8 13 13 N 1.46894 * 109.25706 * 54.08603 * 12 11 10 14 14 C 1.46897 * 111.00366 * 172.60687 * 13 12 11 15 15 C 1.50700 * 109.47149 * 294.30322 * 14 13 12 16 16 O 1.21294 * 119.99874 * 359.97438 * 15 14 13 17 17 N 1.34784 * 120.00115 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99764 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00137 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99787 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00251 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99891 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46892 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47250 * 119.99964 * 22 20 18 25 25 H 1.48501 * 109.46971 * 240.00034 * 22 20 18 26 26 C 1.46906 * 111.26730 * 296.75600 * 13 12 11 27 27 C 1.47078 * 120.88364 * 180.02562 * 10 8 7 28 28 H 1.09002 * 109.47146 * 270.16285 * 1 2 3 29 29 H 1.09006 * 109.46726 * 30.16176 * 1 2 3 30 30 H 1.08999 * 109.47238 * 150.15962 * 1 2 3 31 31 H 1.08002 * 126.57932 * 359.97438 * 3 2 1 32 32 H 1.08002 * 125.78655 * 179.74823 * 4 3 2 33 33 H 1.09002 * 109.47060 * 30.02609 * 7 6 5 34 34 H 1.09001 * 109.47380 * 150.02696 * 7 6 5 35 35 H 1.08995 * 109.63429 * 248.52500 * 11 10 8 36 36 H 1.09000 * 109.62775 * 9.10833 * 11 10 8 37 37 H 1.08997 * 109.65130 * 294.08025 * 12 11 10 38 38 H 1.09004 * 109.44572 * 173.96178 * 12 11 10 39 39 H 1.09000 * 109.47304 * 54.30318 * 14 13 12 40 40 H 1.09003 * 109.47613 * 174.30126 * 14 13 12 41 41 H 0.96995 * 119.99753 * 0.02562 * 17 15 14 42 42 H 0.96997 * 119.99689 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.48797 * 303.14411 * 26 13 12 44 44 H 1.09005 * 109.49020 * 183.06847 * 26 13 12 45 45 H 1.09004 * 109.62590 * 350.89259 * 27 10 8 46 46 H 1.08995 * 109.62815 * 111.47562 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0052 5 8 3.5848 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0035 7 6 1.8521 -2.5164 0.0071 8 6 1.6932 -2.9965 -1.4126 9 8 1.9271 -2.2462 -2.3362 10 7 1.2901 -4.2594 -1.6558 11 6 1.0060 -5.1872 -0.5504 12 6 -0.3847 -5.7998 -0.7808 13 7 -0.4345 -6.3981 -2.1214 14 6 -1.6831 -7.1466 -2.3179 15 6 -1.7102 -8.3315 -1.3872 16 8 -0.7805 -8.5330 -0.6347 17 7 -2.7670 -9.1681 -1.3918 18 6 -2.7913 -10.2463 -0.5455 19 1 -1.9638 -10.4252 0.1252 20 6 -3.8810 -11.1085 -0.5499 21 7 -4.8880 -10.8905 -1.3655 22 14 -3.9145 -12.5773 0.6038 23 1 -2.6697 -12.5994 1.4133 24 1 -5.0899 -12.4722 1.5052 25 1 -4.0101 -13.8285 -0.1904 26 6 -0.2612 -5.3799 -3.1661 27 6 1.1291 -4.7484 -3.0335 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0368 2.1690 -0.0004 32 1 4.5061 1.2922 -0.0105 33 1 2.5926 -3.1318 0.5180 34 1 0.8963 -2.5926 0.5255 35 1 1.7582 -5.9758 -0.5317 36 1 1.0165 -4.6447 0.3949 37 1 -1.1452 -5.0231 -0.7006 38 1 -0.5707 -6.5696 -0.0318 39 1 -2.5329 -6.4980 -2.1051 40 1 -1.7404 -7.4935 -3.3496 41 1 -3.5099 -9.0076 -1.9944 42 1 -5.6488 -11.4922 -1.3683 43 1 -1.0234 -4.6090 -3.0526 44 1 -0.3572 -5.8453 -4.1471 45 1 1.2212 -3.9155 -3.7307 46 1 1.8930 -5.4956 -3.2484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113324353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:29 Heat of formation + Delta-G solvation = -40.420425 kcal Electronic energy + Delta-G solvation = -28705.464460 eV Core-core repulsion = 24597.257965 eV Total energy + Delta-G solvation = -4108.206495 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77409 -40.25633 -38.69827 -37.28618 -34.57387 -34.46664 -33.82684 -32.50267 -31.30853 -31.00278 -29.32021 -28.59157 -26.49298 -25.53389 -23.89336 -23.67471 -21.77710 -21.37953 -19.98371 -19.31532 -18.90931 -17.93931 -17.48895 -17.14348 -16.27611 -16.00434 -15.80981 -15.62774 -15.11595 -14.87559 -14.76875 -14.47594 -14.03907 -13.97130 -13.71070 -13.66323 -13.50243 -13.30343 -13.07106 -12.93276 -12.64745 -12.43660 -12.25014 -11.99933 -11.66265 -11.62691 -11.56663 -11.30034 -11.21775 -11.17998 -10.87380 -10.37822 -10.26887 -9.98826 -9.76410 -9.53334 -8.91835 -8.51717 -8.42565 -8.03581 -7.94069 -6.46270 -3.87230 1.51886 2.37385 2.45529 2.71472 3.00987 3.12931 3.24133 3.30710 3.83249 3.89750 4.18778 4.30697 4.41005 4.67255 4.72579 4.81527 4.90914 4.94706 5.03476 5.04413 5.19032 5.19365 5.27080 5.30624 5.37804 5.43070 5.45584 5.58841 5.65224 5.68747 5.75555 5.81032 5.84185 5.86121 6.00764 6.08255 6.12879 6.20724 6.37728 6.41825 6.97700 7.07794 7.25207 7.31017 7.51063 8.00639 8.01526 8.56234 9.13285 9.49293 10.00178 10.71361 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.002066 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.479239 B =13548.506950 C =13840.037951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.165 4.165 3 C -0.211 4.211 4 C -0.038 4.038 5 O -0.171 6.171 6 C 0.005 3.995 7 C -0.061 4.061 8 C 0.516 3.484 9 O -0.536 6.536 10 N -0.611 5.611 11 C 0.112 3.888 12 C 0.038 3.962 13 N -0.515 5.515 14 C 0.047 3.953 15 C 0.443 3.557 16 O -0.579 6.579 17 N -0.563 5.563 18 C -0.298 4.298 19 H 0.104 0.896 20 C 0.022 3.978 21 N -0.901 5.901 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.281 1.281 26 C 0.041 3.959 27 C 0.119 3.881 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.146 0.854 32 H 0.202 0.798 33 H 0.113 0.887 34 H 0.122 0.878 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.028 0.972 38 H 0.117 0.883 39 H 0.048 0.952 40 H 0.090 0.910 41 H 0.392 0.608 42 H 0.271 0.729 43 H 0.035 0.965 44 H 0.087 0.913 45 H 0.093 0.907 46 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.999 20.022 1.105 22.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.167 4.167 3 C -0.230 4.230 4 C -0.105 4.105 5 O -0.067 6.067 6 C -0.046 4.046 7 C -0.101 4.101 8 C 0.304 3.696 9 O -0.413 6.413 10 N -0.345 5.345 11 C -0.011 4.011 12 C -0.090 4.090 13 N -0.240 5.240 14 C -0.085 4.085 15 C 0.228 3.772 16 O -0.463 6.463 17 N -0.199 5.199 18 C -0.428 4.428 19 H 0.122 0.878 20 C -0.180 4.180 21 N -0.542 5.542 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.207 1.207 26 C -0.088 4.088 27 C -0.003 4.003 28 H 0.086 0.914 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.164 0.836 32 H 0.218 0.782 33 H 0.131 0.869 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.103 0.897 37 H 0.046 0.954 38 H 0.135 0.865 39 H 0.066 0.934 40 H 0.108 0.892 41 H 0.225 0.775 42 H 0.081 0.919 43 H 0.053 0.947 44 H 0.105 0.895 45 H 0.111 0.889 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.200 19.642 1.050 22.635 hybrid contribution -1.405 0.034 0.142 1.412 sum 9.795 19.676 1.192 22.012 Atomic orbital electron populations 1.20178 0.89303 1.02713 1.01832 1.20162 0.97043 0.92022 1.07441 1.21668 0.92630 0.99696 1.08977 1.23933 0.99708 0.80550 1.06350 1.83982 1.28613 1.22820 1.71311 1.21265 0.81207 0.94933 1.07153 1.20126 1.04119 0.89684 0.96155 1.20338 0.76995 0.81393 0.90881 1.90716 1.50238 1.54389 1.45908 1.48242 1.66795 1.11278 1.08221 1.22067 0.98106 0.92456 0.88457 1.22731 0.94766 0.98598 0.92910 1.61492 1.35668 1.24758 1.02032 1.21852 0.90351 0.95441 1.00816 1.19709 0.84535 0.85649 0.87277 1.90474 1.36809 1.75240 1.43803 1.41885 1.17924 1.23864 1.36255 1.19740 1.04829 1.01770 1.16464 0.87799 1.25277 0.95251 0.99480 0.97980 1.69618 1.08120 1.38855 1.37605 0.85802 0.78377 0.80518 0.79659 1.19196 1.20774 1.20750 1.22518 0.96252 0.93608 0.96429 1.21711 0.96910 0.98938 0.82747 0.91416 0.91449 0.91892 0.83574 0.78163 0.86925 0.85972 0.89665 0.89701 0.95380 0.86528 0.93429 0.89168 0.77483 0.91886 0.94690 0.89458 0.88868 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.76 10.00 36.01 0.36 -0.40 16 2 C -0.17 -1.86 6.16 -104.74 -0.65 -2.50 16 3 C -0.21 -2.10 10.87 -39.70 -0.43 -2.53 16 4 C -0.04 -0.36 12.09 29.42 0.36 -0.01 16 5 O -0.17 -2.09 10.65 5.70 0.06 -2.03 16 6 C 0.00 0.06 5.81 -35.62 -0.21 -0.15 16 7 C -0.06 -0.60 4.21 -29.03 -0.12 -0.73 16 8 C 0.52 6.60 7.70 -10.98 -0.08 6.52 16 9 O -0.54 -8.78 15.49 5.56 0.09 -8.69 16 10 N -0.61 -7.40 3.00 -172.16 -0.52 -7.92 16 11 C 0.11 1.28 6.53 -3.36 -0.02 1.26 16 12 C 0.04 0.55 5.27 -3.47 -0.02 0.53 16 13 N -0.51 -7.87 4.37 -235.44 -1.03 -8.90 16 14 C 0.05 0.78 5.45 -4.98 -0.03 0.75 16 15 C 0.44 9.81 7.44 -10.98 -0.08 9.73 16 16 O -0.58 -14.48 13.91 5.55 0.08 -14.40 16 17 N -0.56 -13.65 5.29 -10.96 -0.06 -13.71 16 18 C -0.30 -8.02 9.68 -14.94 -0.14 -8.16 16 19 H 0.10 2.93 7.16 -52.48 -0.38 2.55 16 20 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 21 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 22 Si 0.93 20.50 29.55 -169.99 -5.02 15.47 16 23 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 26 C 0.04 0.51 5.62 -3.68 -0.02 0.48 16 27 C 0.12 1.45 6.60 -3.58 -0.02 1.43 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.60 7.79 -51.93 -0.40 0.20 16 31 H 0.15 1.12 8.06 -52.49 -0.42 0.69 16 32 H 0.20 1.10 8.06 -52.49 -0.42 0.67 16 33 H 0.11 0.89 7.99 -51.93 -0.41 0.48 16 34 H 0.12 0.93 7.31 -51.93 -0.38 0.55 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.08 0.71 6.02 -51.93 -0.31 0.40 16 37 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 38 H 0.12 2.01 5.77 -51.93 -0.30 1.71 16 39 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 40 H 0.09 1.36 7.97 -51.93 -0.41 0.95 16 41 H 0.39 9.15 7.90 -40.82 -0.32 8.82 16 42 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 43 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 44 H 0.09 0.96 7.99 -51.93 -0.41 0.55 16 45 H 0.09 1.15 7.06 -51.93 -0.37 0.78 16 46 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 379.91 15.07 5.73 5.73 Total: -1.00 -33.66 379.91 -7.81 -41.46 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -6.64 Total: 9.51 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.21 Total: 6.68 kcal Atomic # 7 Polarization: -52.85 SS G_CDS: -0.88 Total: -53.73 kcal Atomic # 8 Polarization: -25.34 SS G_CDS: 0.22 Total: -25.12 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.66 -7.81 -41.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113324353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.044 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds