Wall clock time and date at job start Tue Mar 31 2020 19:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41377 * 126.58355 * 2 1 4 4 C 1.34513 * 106.84156 * 180.23233 * 3 2 1 5 5 O 1.34308 * 108.42139 * 359.77643 * 4 3 2 6 6 C 1.34300 * 109.47319 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.78840 * 179.97438 * 6 5 4 8 8 C 1.50703 * 109.47064 * 270.02645 * 7 6 5 9 9 O 1.21278 * 119.99985 * 359.97438 * 8 7 6 10 10 N 1.34777 * 120.00161 * 180.02562 * 8 7 6 11 11 C 1.47083 * 120.87903 * 359.71565 * 10 8 7 12 12 C 1.53695 * 108.27426 * 128.75696 * 11 10 8 13 13 N 1.46894 * 109.25706 * 54.08603 * 12 11 10 14 14 C 1.46897 * 111.00366 * 172.60687 * 13 12 11 15 15 C 1.50700 * 109.47149 * 294.30322 * 14 13 12 16 16 O 1.21294 * 119.99874 * 359.97438 * 15 14 13 17 17 N 1.34784 * 120.00115 * 180.02562 * 15 14 13 18 18 C 1.37091 * 119.99764 * 179.97438 * 17 15 14 19 19 H 1.08006 * 120.00137 * 0.02562 * 18 17 15 20 20 C 1.38948 * 119.99787 * 179.97438 * 18 17 15 21 21 N 1.31412 * 120.00251 * 0.02562 * 20 18 17 22 22 Si 1.86809 * 119.99891 * 180.02562 * 20 18 17 23 23 H 1.48495 * 109.46892 * 359.97438 * 22 20 18 24 24 H 1.48501 * 109.47250 * 119.99964 * 22 20 18 25 25 H 1.48501 * 109.46971 * 240.00034 * 22 20 18 26 26 C 1.46906 * 111.26730 * 296.75600 * 13 12 11 27 27 C 1.47078 * 120.88364 * 180.02562 * 10 8 7 28 28 H 1.09002 * 109.47146 * 270.16285 * 1 2 3 29 29 H 1.09006 * 109.46726 * 30.16176 * 1 2 3 30 30 H 1.08999 * 109.47238 * 150.15962 * 1 2 3 31 31 H 1.08002 * 126.57932 * 359.97438 * 3 2 1 32 32 H 1.08002 * 125.78655 * 179.74823 * 4 3 2 33 33 H 1.09002 * 109.47060 * 30.02609 * 7 6 5 34 34 H 1.09001 * 109.47380 * 150.02696 * 7 6 5 35 35 H 1.08995 * 109.63429 * 248.52500 * 11 10 8 36 36 H 1.09000 * 109.62775 * 9.10833 * 11 10 8 37 37 H 1.08997 * 109.65130 * 294.08025 * 12 11 10 38 38 H 1.09004 * 109.44572 * 173.96178 * 12 11 10 39 39 H 1.09000 * 109.47304 * 54.30318 * 14 13 12 40 40 H 1.09003 * 109.47613 * 174.30126 * 14 13 12 41 41 H 0.96995 * 119.99753 * 0.02562 * 17 15 14 42 42 H 0.96997 * 119.99689 * 180.02562 * 21 20 18 43 43 H 1.09000 * 109.48797 * 303.14411 * 26 13 12 44 44 H 1.09005 * 109.49020 * 183.06847 * 26 13 12 45 45 H 1.09004 * 109.62590 * 350.89259 * 27 10 8 46 46 H 1.08995 * 109.62815 * 111.47562 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3496 1.1352 0.0000 4 6 3.6157 0.6809 -0.0052 5 8 3.5848 -0.6618 -0.0034 6 6 2.3086 -1.0803 0.0035 7 6 1.8521 -2.5164 0.0071 8 6 1.6932 -2.9965 -1.4126 9 8 1.9271 -2.2462 -2.3362 10 7 1.2901 -4.2594 -1.6558 11 6 1.0060 -5.1872 -0.5504 12 6 -0.3847 -5.7998 -0.7808 13 7 -0.4345 -6.3981 -2.1214 14 6 -1.6831 -7.1466 -2.3179 15 6 -1.7102 -8.3315 -1.3872 16 8 -0.7805 -8.5330 -0.6347 17 7 -2.7670 -9.1681 -1.3918 18 6 -2.7913 -10.2463 -0.5455 19 1 -1.9638 -10.4252 0.1252 20 6 -3.8810 -11.1085 -0.5499 21 7 -4.8880 -10.8905 -1.3655 22 14 -3.9145 -12.5773 0.6038 23 1 -2.6697 -12.5994 1.4133 24 1 -5.0899 -12.4722 1.5052 25 1 -4.0101 -13.8285 -0.1904 26 6 -0.2612 -5.3799 -3.1661 27 6 1.1291 -4.7484 -3.0335 28 1 -0.3633 0.0029 1.0277 29 1 -0.3633 0.8886 -0.5164 30 1 -0.3633 -0.8914 -0.5113 31 1 2.0368 2.1690 -0.0004 32 1 4.5061 1.2922 -0.0105 33 1 2.5926 -3.1318 0.5180 34 1 0.8963 -2.5926 0.5255 35 1 1.7582 -5.9758 -0.5317 36 1 1.0165 -4.6447 0.3949 37 1 -1.1452 -5.0231 -0.7006 38 1 -0.5707 -6.5696 -0.0318 39 1 -2.5329 -6.4980 -2.1051 40 1 -1.7404 -7.4935 -3.3496 41 1 -3.5099 -9.0076 -1.9944 42 1 -5.6488 -11.4922 -1.3683 43 1 -1.0234 -4.6090 -3.0526 44 1 -0.3572 -5.8453 -4.1471 45 1 1.2212 -3.9155 -3.7307 46 1 1.8930 -5.4956 -3.2484 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113324353.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:03:28 Heat of formation + Delta-G solvation = -64.032419 kcal Electronic energy + Delta-G solvation = -28706.488353 eV Core-core repulsion = 24597.257965 eV Total energy + Delta-G solvation = -4109.230388 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.53969 -41.30465 -40.23428 -38.62774 -36.04756 -35.43506 -35.23049 -33.33969 -33.23371 -31.97736 -30.35978 -29.58738 -27.57626 -26.84731 -25.39312 -24.69921 -22.66505 -22.27852 -21.05548 -20.79365 -19.93066 -19.78608 -18.45498 -17.96547 -17.75304 -17.04519 -16.75914 -16.64164 -16.49681 -16.33814 -16.07786 -15.59428 -15.39497 -15.27019 -15.13752 -14.67014 -14.47505 -14.19632 -13.98868 -13.86585 -13.63650 -13.49584 -13.37306 -13.23643 -13.01793 -12.95674 -12.77694 -12.38945 -12.38526 -12.30491 -12.25631 -12.14875 -12.07952 -11.42558 -11.01459 -10.51243 -10.32031 -9.97588 -9.78626 -9.28330 -9.20381 -8.43855 -5.91754 0.73791 1.38414 1.44145 1.49485 1.57663 1.61379 1.89979 2.08722 2.19447 2.30233 2.74166 3.23590 3.39119 3.45292 3.65951 3.90519 3.96850 4.00192 4.05078 4.16726 4.19124 4.24066 4.29241 4.36350 4.47148 4.49204 4.53047 4.61433 4.62923 4.73128 4.78097 4.83910 4.87789 4.93793 4.96707 5.06642 5.13901 5.31213 5.39724 5.44675 5.66785 5.83350 6.06564 6.15272 6.21604 6.32542 6.63602 7.03540 7.16437 7.60501 8.15348 8.73710 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025028 B = 0.002066 C = 0.002023 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1118.479239 B =13548.506950 C =13840.037951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.180 4.180 3 C -0.227 4.227 4 C -0.039 4.039 5 O -0.192 6.192 6 C -0.022 4.022 7 C -0.058 4.058 8 C 0.517 3.483 9 O -0.576 6.576 10 N -0.609 5.609 11 C 0.119 3.881 12 C 0.040 3.960 13 N -0.532 5.532 14 C 0.059 3.941 15 C 0.444 3.556 16 O -0.609 6.609 17 N -0.576 5.576 18 C -0.326 4.326 19 H 0.081 0.919 20 C -0.016 4.016 21 N -0.922 5.922 22 Si 0.991 3.009 23 H -0.272 1.272 24 H -0.273 1.273 25 H -0.274 1.274 26 C 0.048 3.952 27 C 0.119 3.881 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.166 0.834 32 H 0.236 0.764 33 H 0.133 0.867 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.119 0.881 37 H 0.038 0.962 38 H 0.084 0.916 39 H 0.066 0.934 40 H 0.110 0.890 41 H 0.395 0.605 42 H 0.276 0.724 43 H 0.040 0.960 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.012 20.997 1.459 23.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.182 4.182 3 C -0.246 4.246 4 C -0.106 4.106 5 O -0.089 6.089 6 C -0.072 4.072 7 C -0.097 4.097 8 C 0.306 3.694 9 O -0.456 6.456 10 N -0.342 5.342 11 C -0.003 4.003 12 C -0.089 4.089 13 N -0.257 5.257 14 C -0.072 4.072 15 C 0.231 3.769 16 O -0.495 6.495 17 N -0.213 5.213 18 C -0.456 4.456 19 H 0.099 0.901 20 C -0.215 4.215 21 N -0.564 5.564 22 Si 0.815 3.185 23 H -0.196 1.196 24 H -0.198 1.198 25 H -0.200 1.200 26 C -0.080 4.080 27 C -0.003 4.003 28 H 0.102 0.898 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.184 0.816 32 H 0.252 0.748 33 H 0.150 0.850 34 H 0.164 0.836 35 H 0.095 0.905 36 H 0.137 0.863 37 H 0.057 0.943 38 H 0.103 0.897 39 H 0.084 0.916 40 H 0.128 0.872 41 H 0.229 0.771 42 H 0.085 0.915 43 H 0.058 0.942 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.204 20.622 1.400 23.511 hybrid contribution -1.340 -0.177 0.008 1.351 sum 9.865 20.445 1.408 22.744 Atomic orbital electron populations 1.20213 0.88224 1.02611 1.02823 1.20588 0.98125 0.92496 1.06956 1.22029 0.92785 1.00507 1.09269 1.24714 1.01102 0.79946 1.04857 1.83967 1.29080 1.24105 1.71766 1.21617 0.81299 0.95889 1.08384 1.20220 1.05896 0.89201 0.94354 1.20817 0.75902 0.80925 0.91714 1.90694 1.52073 1.55378 1.47413 1.48284 1.66332 1.11268 1.08322 1.22057 0.96117 0.92481 0.89669 1.22645 0.96748 0.97832 0.91663 1.61471 1.34890 1.26109 1.03234 1.21714 0.91893 0.93545 1.00087 1.20685 0.83110 0.86151 0.86920 1.90457 1.37744 1.76204 1.45107 1.41956 1.18827 1.24072 1.36487 1.19683 1.04865 1.03561 1.17490 0.90054 1.26020 0.94644 1.01591 0.99250 1.69680 1.08462 1.39758 1.38452 0.84891 0.78262 0.77461 0.77863 1.19602 1.19795 1.19969 1.22526 0.96344 0.92993 0.96175 1.21693 0.96819 0.98789 0.83025 0.89817 0.90967 0.92546 0.81648 0.74759 0.84957 0.83610 0.90461 0.86347 0.94345 0.89745 0.91637 0.87167 0.77136 0.91458 0.94216 0.87873 0.89040 0.90534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.38 10.00 71.24 0.71 -0.67 16 2 C -0.18 -3.84 6.16 -19.94 -0.12 -3.96 16 3 C -0.23 -4.22 10.87 22.19 0.24 -3.98 16 4 C -0.04 -0.70 12.09 66.97 0.81 0.11 16 5 O -0.19 -4.52 10.65 -2.50 -0.03 -4.55 16 6 C -0.02 -0.50 5.81 24.83 0.14 -0.35 16 7 C -0.06 -1.03 4.21 29.10 0.12 -0.91 16 8 C 0.52 12.59 7.70 87.66 0.68 13.27 16 9 O -0.58 -18.64 15.49 -3.02 -0.05 -18.68 16 10 N -0.61 -13.86 3.00 -816.98 -2.45 -16.31 16 11 C 0.12 2.53 6.53 86.50 0.57 3.10 16 12 C 0.04 1.08 5.27 86.54 0.46 1.54 16 13 N -0.53 -15.54 4.37 -898.80 -3.93 -19.47 16 14 C 0.06 1.87 5.45 85.56 0.47 2.34 16 15 C 0.44 19.75 7.44 87.66 0.65 20.40 16 16 O -0.61 -31.03 13.91 -3.07 -0.04 -31.07 16 17 N -0.58 -28.27 5.29 -306.98 -1.62 -29.89 16 18 C -0.33 -17.86 9.68 84.04 0.81 -17.05 16 19 H 0.08 4.74 7.16 -2.91 -0.02 4.71 16 20 C -0.02 -0.82 5.50 84.93 0.47 -0.35 16 21 N -0.92 -48.84 13.05 21.66 0.28 -48.55 16 22 Si 0.99 41.97 29.55 68.60 2.03 44.00 16 23 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 24 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 25 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 26 C 0.05 1.09 5.62 86.39 0.49 1.58 16 27 C 0.12 2.75 6.60 86.36 0.57 3.32 16 28 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 30 H 0.06 1.01 7.79 -2.39 -0.02 0.99 16 31 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 32 H 0.24 2.03 8.06 -2.91 -0.02 2.01 16 33 H 0.13 1.81 7.99 -2.39 -0.02 1.79 16 34 H 0.15 1.84 7.31 -2.39 -0.02 1.82 16 35 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.12 1.69 6.02 -2.39 -0.01 1.68 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 2.92 5.77 -2.38 -0.01 2.90 16 39 H 0.07 1.89 8.12 -2.39 -0.02 1.87 16 40 H 0.11 3.11 7.97 -2.39 -0.02 3.09 16 41 H 0.40 18.56 7.90 -92.71 -0.73 17.83 16 42 H 0.28 13.71 8.31 -92.71 -0.77 12.94 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.10 2.03 7.99 -2.38 -0.02 2.01 16 45 H 0.09 2.18 7.06 -2.39 -0.02 2.16 16 46 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -73.85 379.91 1.53 -72.32 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: 0.28 Total: 33.82 kcal Atomic # 6 Polarization: 11.34 SS G_CDS: 7.06 Total: 18.39 kcal Atomic # 7 Polarization: -106.51 SS G_CDS: -7.72 Total: -114.23 kcal Atomic # 8 Polarization: -54.19 SS G_CDS: -0.12 Total: -54.30 kcal Atomic # 14 Polarization: 41.97 SS G_CDS: 2.03 Total: 44.00 kcal Total: -73.85 1.53 -72.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113324353.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.289 kcal (2) G-P(sol) polarization free energy of solvation -73.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.525 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds