Wall clock time and date at job start Tue Mar 31 2020 19:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30179 * 126.80010 * 2 1 4 4 O 1.20911 * 111.60518 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56931 * 359.75965 * 4 3 2 6 6 C 1.50697 * 126.77974 * 180.29231 * 5 4 3 7 7 C 1.35454 * 106.44157 * 0.38113 * 5 4 3 8 8 C 1.50701 * 128.00076 * 179.91486 * 7 5 4 9 9 C 1.53002 * 109.47210 * 269.67319 * 8 7 5 10 10 N 1.46492 * 109.47573 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00351 * 179.97438 * 10 9 8 12 12 O 1.21345 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.49449 * 120.00001 * 180.02562 * 11 10 9 14 14 O 1.21347 * 120.00228 * 5.09493 * 13 11 10 15 15 N 1.34774 * 120.00048 * 185.09256 * 13 11 10 16 16 C 1.46502 * 120.00331 * 185.04195 * 15 13 11 17 17 C 1.52996 * 109.47063 * 184.77839 * 16 15 13 18 18 C 1.50698 * 115.55121 * 294.81386 * 17 16 15 19 19 H 1.08003 * 119.99766 * 95.20398 * 18 17 16 20 20 C 1.37874 * 119.99926 * 274.92660 * 18 17 16 21 21 N 1.31507 * 120.00401 * 355.41780 * 20 18 17 22 22 Si 1.86807 * 119.99884 * 175.41717 * 20 18 17 23 23 H 1.48500 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47138 * 120.00273 * 22 20 18 25 25 H 1.48505 * 109.47155 * 240.00161 * 22 20 18 26 26 C 1.53002 * 117.49906 * 80.48488 * 17 16 15 27 27 C 1.53002 * 117.49925 * 149.14404 * 17 16 15 28 28 H 1.08999 * 109.47382 * 269.97737 * 1 2 3 29 29 H 1.08999 * 109.47724 * 29.97642 * 1 2 3 30 30 H 1.09005 * 109.47127 * 149.98189 * 1 2 3 31 31 H 1.09003 * 109.46800 * 270.10314 * 6 5 4 32 32 H 1.08997 * 109.47570 * 30.10683 * 6 5 4 33 33 H 1.08998 * 109.47191 * 150.11141 * 6 5 4 34 34 H 1.09005 * 109.46526 * 149.67998 * 8 7 5 35 35 H 1.08995 * 109.48094 * 29.68062 * 8 7 5 36 36 H 1.08999 * 109.46756 * 60.00157 * 9 8 7 37 37 H 1.09006 * 109.47270 * 300.00773 * 9 8 7 38 38 H 0.97003 * 120.00155 * 0.02562 * 10 9 8 39 39 H 0.97000 * 119.99834 * 5.03638 * 15 13 11 40 40 H 1.08991 * 109.46950 * 64.77719 * 16 15 13 41 41 H 1.09002 * 109.46795 * 304.77265 * 16 15 13 42 42 H 0.97005 * 120.00851 * 184.99676 * 21 20 18 43 43 H 1.09007 * 117.49900 * 214.99948 * 26 17 16 44 44 H 1.08994 * 117.50021 * 0.02562 * 26 17 16 45 45 H 1.09005 * 117.49794 * 359.97438 * 27 17 16 46 46 H 1.09000 * 117.49885 * 144.96827 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7255 -0.0005 5 6 3.6025 -0.6066 0.0043 6 6 4.9022 -1.3693 0.0115 7 6 2.3539 -1.1319 -0.0005 8 6 1.9592 -2.5863 0.0001 9 6 1.8243 -3.0788 -1.4422 10 7 1.4400 -4.4924 -1.4417 11 6 1.2618 -5.1428 -2.6086 12 8 1.4202 -4.5575 -3.6597 13 6 0.8692 -6.5848 -2.6080 14 8 0.6208 -7.1456 -1.5609 15 7 0.7910 -7.2624 -3.7704 16 6 0.3003 -8.6428 -3.7821 17 6 0.4233 -9.2158 -5.1953 18 6 -0.4407 -8.5587 -6.2406 19 1 -0.0355 -7.7718 -6.8594 20 6 -1.7469 -8.9662 -6.4109 21 7 -2.2119 -9.9873 -5.7250 22 14 -2.8560 -8.0677 -7.6159 23 1 -2.0982 -6.9635 -8.2575 24 1 -3.3257 -9.0158 -8.6579 25 1 -4.0258 -7.5099 -6.8908 26 6 1.7976 -9.7260 -5.6336 27 6 0.6735 -10.7193 -5.3288 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3634 -0.8899 -0.5141 31 1 5.2201 -1.5549 -1.0145 32 1 5.6636 -0.7849 0.5278 33 1 4.7628 -2.3200 0.5261 34 1 1.0055 -2.7036 0.5148 35 1 2.7232 -3.1701 0.5134 36 1 2.7779 -2.9613 -1.9569 37 1 1.0601 -2.4950 -1.9555 38 1 1.3130 -4.9602 -0.6014 39 1 1.0595 -6.8361 -4.5993 40 1 -0.7447 -8.6595 -3.4730 41 1 0.8927 -9.2448 -3.0931 42 1 -3.1069 -10.3198 -5.8966 43 1 2.0767 -9.5865 -6.6781 44 1 2.6139 -9.6539 -4.9150 45 1 0.7508 -11.3002 -4.4096 46 1 0.2126 -11.2333 -6.1723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117723237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:36 Heat of formation + Delta-G solvation = -0.197538 kcal Electronic energy + Delta-G solvation = -27972.200625 eV Core-core repulsion = 23865.738325 eV Total energy + Delta-G solvation = -4106.462300 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.26471 -40.31182 -38.34389 -36.74932 -36.71201 -34.86552 -33.97645 -33.32896 -31.99392 -30.75062 -29.00693 -27.95795 -27.07683 -25.56688 -24.71632 -22.62486 -21.72239 -21.18287 -20.54249 -19.91849 -19.53009 -18.14403 -17.95194 -17.23549 -16.62599 -16.17857 -15.98106 -15.42391 -15.14286 -14.76315 -14.64262 -14.48335 -14.09562 -13.89081 -13.82558 -13.54507 -13.38579 -13.30571 -13.10370 -12.97505 -12.72093 -12.62379 -12.49252 -11.97101 -11.84992 -11.64920 -11.36521 -11.22547 -11.01313 -10.97969 -10.53003 -10.27446 -10.17694 -9.65578 -9.52874 -9.32887 -9.27008 -9.10400 -8.56260 -8.42381 -8.21036 -6.11115 -4.20797 1.09360 1.72876 1.81041 2.58255 2.79121 3.24367 3.33756 3.37720 3.54425 3.80205 3.99057 4.06702 4.33203 4.34298 4.55702 4.61439 4.82764 4.88060 4.92474 4.97023 5.05813 5.14608 5.16583 5.19590 5.28827 5.31689 5.39614 5.53612 5.58913 5.64311 5.83198 5.93131 6.13726 6.25811 6.37095 6.44712 6.63868 6.72147 6.94432 7.06117 7.15181 7.30180 7.47520 7.78432 7.80282 7.95258 8.09606 8.29182 8.47416 8.81844 9.47181 10.95925 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002158 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.806619 B =12968.873355 C =13783.034739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.028 3.972 3 N -0.367 5.367 4 O 0.097 5.903 5 C -0.023 4.023 6 C -0.077 4.077 7 C -0.200 4.200 8 C -0.052 4.052 9 C 0.123 3.877 10 N -0.709 5.709 11 C 0.509 3.491 12 O -0.516 6.516 13 C 0.495 3.505 14 O -0.541 6.541 15 N -0.666 5.666 16 C 0.159 3.841 17 C 0.020 3.980 18 C -0.500 4.500 19 H 0.062 0.938 20 C 0.073 3.927 21 N -0.876 5.876 22 Si 0.890 3.110 23 H -0.271 1.271 24 H -0.284 1.284 25 H -0.283 1.283 26 C -0.210 4.210 27 C -0.139 4.139 28 H 0.081 0.919 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.413 0.587 39 H 0.414 0.586 40 H 0.074 0.926 41 H 0.048 0.952 42 H 0.261 0.739 43 H 0.079 0.921 44 H 0.065 0.935 45 H 0.064 0.936 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.757 14.977 13.720 22.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.131 4.131 3 N -0.073 5.073 4 O 0.033 5.967 5 C -0.086 4.086 6 C -0.134 4.134 7 C -0.204 4.204 8 C -0.090 4.090 9 C 0.000 4.000 10 N -0.364 5.364 11 C 0.290 3.710 12 O -0.391 6.391 13 C 0.275 3.725 14 O -0.420 6.420 15 N -0.315 5.315 16 C 0.037 3.963 17 C 0.019 3.981 18 C -0.538 4.538 19 H 0.081 0.919 20 C -0.131 4.131 21 N -0.512 5.512 22 Si 0.718 3.282 23 H -0.196 1.196 24 H -0.210 1.210 25 H -0.209 1.209 26 C -0.247 4.247 27 C -0.178 4.178 28 H 0.100 0.900 29 H 0.096 0.904 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.103 0.897 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.249 0.751 39 H 0.250 0.750 40 H 0.092 0.908 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.098 0.902 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.265 16.239 13.731 23.614 hybrid contribution -0.807 -0.361 -0.649 1.097 sum 9.458 15.878 13.082 22.643 Atomic orbital electron populations 1.20214 0.85824 1.04150 1.03493 1.23484 0.99012 0.88363 1.02291 1.73858 0.89253 1.23914 1.20284 1.84812 1.21674 1.22451 1.67810 1.24312 0.98238 0.83895 1.02184 1.20398 0.89971 0.98606 1.04466 1.20648 0.91735 0.96836 1.11228 1.20042 1.03444 0.88912 0.96629 1.21355 1.01605 0.80779 0.96284 1.45700 1.69828 1.11594 1.09261 1.20505 0.77958 0.88478 0.84092 1.90770 1.48650 1.68640 1.31024 1.19899 0.80533 0.86811 0.85296 1.90712 1.50602 1.69489 1.31223 1.45903 1.61180 1.15505 1.08916 1.21221 0.98785 0.78488 0.97845 1.19039 0.93136 0.93941 0.91937 1.20425 0.95053 1.20244 1.18049 0.91938 1.24988 0.97753 0.94864 0.95486 1.69991 1.17563 1.23909 1.39707 0.86566 0.80799 0.80010 0.80862 1.19551 1.21007 1.20914 1.23035 0.92414 1.08899 1.00351 1.22478 1.00726 0.93372 1.01175 0.90036 0.90371 0.89755 0.89053 0.89706 0.88872 0.89377 0.89477 0.90859 0.90876 0.75131 0.74985 0.90767 0.93354 0.92887 0.90208 0.91641 0.91723 0.89380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 10.39 36.01 0.37 -0.20 16 2 C 0.03 0.27 7.33 -82.10 -0.60 -0.34 16 3 N -0.37 -4.17 12.07 33.42 0.40 -3.77 16 4 O 0.10 0.98 11.20 17.18 0.19 1.17 16 5 C -0.02 -0.18 7.49 -35.30 -0.26 -0.44 16 6 C -0.08 -0.32 10.30 36.00 0.37 0.05 16 7 C -0.20 -1.64 5.58 -104.42 -0.58 -2.22 16 8 C -0.05 -0.34 5.66 -27.88 -0.16 -0.50 16 9 C 0.12 1.13 5.66 -4.05 -0.02 1.10 16 10 N -0.71 -7.90 5.55 -60.73 -0.34 -8.24 16 11 C 0.51 7.85 7.89 -11.59 -0.09 7.76 16 12 O -0.52 -9.19 16.50 5.50 0.09 -9.10 16 13 C 0.50 8.87 7.88 -11.59 -0.09 8.78 16 14 O -0.54 -10.43 16.47 5.50 0.09 -10.34 16 15 N -0.67 -12.93 5.46 -60.73 -0.33 -13.26 16 16 C 0.16 3.45 5.53 -4.04 -0.02 3.43 16 17 C 0.02 0.47 1.47 -155.66 -0.23 0.24 16 18 C -0.50 -12.81 8.59 -34.44 -0.30 -13.11 16 19 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 20 C 0.07 1.92 5.43 -17.82 -0.10 1.83 16 21 N -0.88 -23.83 12.65 55.43 0.70 -23.13 16 22 Si 0.89 20.61 29.54 -169.99 -5.02 15.59 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 25 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 26 C -0.21 -4.29 9.96 -26.69 -0.27 -4.55 16 27 C -0.14 -3.10 9.14 -26.69 -0.24 -3.35 16 28 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.09 0.28 7.43 -51.93 -0.39 -0.11 16 34 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.43 7.44 -51.93 -0.39 0.04 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.41 3.96 7.96 -40.82 -0.32 3.63 16 39 H 0.41 8.00 7.84 -40.82 -0.32 7.68 16 40 H 0.07 1.80 8.14 -51.93 -0.42 1.38 16 41 H 0.05 1.01 8.05 -51.93 -0.42 0.59 16 42 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 43 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 44 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 45 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 LS Contribution 399.74 15.07 6.02 6.02 Total: -1.00 -31.23 399.74 -7.29 -38.51 By element: Atomic # 1 Polarization: 14.93 SS G_CDS: -6.88 Total: 8.05 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -2.22 Total: -1.52 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: 0.44 Total: -48.39 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.37 Total: -18.26 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.23 -7.29 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117723237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.316 kcal (2) G-P(sol) polarization free energy of solvation -31.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds