Wall clock time and date at job start Tue Mar 31 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30179 * 126.80010 * 2 1 4 4 O 1.20911 * 111.60518 * 180.02562 * 3 2 1 5 5 C 1.34041 * 111.56931 * 359.75965 * 4 3 2 6 6 C 1.50697 * 126.77974 * 180.29231 * 5 4 3 7 7 C 1.35454 * 106.44157 * 0.38113 * 5 4 3 8 8 C 1.50701 * 128.00076 * 179.91486 * 7 5 4 9 9 C 1.53002 * 109.47210 * 269.67319 * 8 7 5 10 10 N 1.46492 * 109.47573 * 180.02562 * 9 8 7 11 11 C 1.34778 * 120.00351 * 179.97438 * 10 9 8 12 12 O 1.21345 * 119.99684 * 0.02562 * 11 10 9 13 13 C 1.49449 * 120.00001 * 180.02562 * 11 10 9 14 14 O 1.21347 * 120.00228 * 5.09493 * 13 11 10 15 15 N 1.34774 * 120.00048 * 185.09256 * 13 11 10 16 16 C 1.46502 * 120.00331 * 185.04195 * 15 13 11 17 17 C 1.52996 * 109.47063 * 184.77839 * 16 15 13 18 18 C 1.50698 * 115.55121 * 294.81386 * 17 16 15 19 19 H 1.08003 * 119.99766 * 95.20398 * 18 17 16 20 20 C 1.37874 * 119.99926 * 274.92660 * 18 17 16 21 21 N 1.31507 * 120.00401 * 355.41780 * 20 18 17 22 22 Si 1.86807 * 119.99884 * 175.41717 * 20 18 17 23 23 H 1.48500 * 109.47157 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47138 * 120.00273 * 22 20 18 25 25 H 1.48505 * 109.47155 * 240.00161 * 22 20 18 26 26 C 1.53002 * 117.49906 * 80.48488 * 17 16 15 27 27 C 1.53002 * 117.49925 * 149.14404 * 17 16 15 28 28 H 1.08999 * 109.47382 * 269.97737 * 1 2 3 29 29 H 1.08999 * 109.47724 * 29.97642 * 1 2 3 30 30 H 1.09005 * 109.47127 * 149.98189 * 1 2 3 31 31 H 1.09003 * 109.46800 * 270.10314 * 6 5 4 32 32 H 1.08997 * 109.47570 * 30.10683 * 6 5 4 33 33 H 1.08998 * 109.47191 * 150.11141 * 6 5 4 34 34 H 1.09005 * 109.46526 * 149.67998 * 8 7 5 35 35 H 1.08995 * 109.48094 * 29.68062 * 8 7 5 36 36 H 1.08999 * 109.46756 * 60.00157 * 9 8 7 37 37 H 1.09006 * 109.47270 * 300.00773 * 9 8 7 38 38 H 0.97003 * 120.00155 * 0.02562 * 10 9 8 39 39 H 0.97000 * 119.99834 * 5.03638 * 15 13 11 40 40 H 1.08991 * 109.46950 * 64.77719 * 16 15 13 41 41 H 1.09002 * 109.46795 * 304.77265 * 16 15 13 42 42 H 0.97005 * 120.00851 * 184.99676 * 21 20 18 43 43 H 1.09007 * 117.49900 * 214.99948 * 26 17 16 44 44 H 1.08994 * 117.50021 * 0.02562 * 26 17 16 45 45 H 1.09005 * 117.49794 * 359.97438 * 27 17 16 46 46 H 1.09000 * 117.49885 * 144.96827 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2868 1.0424 0.0000 4 8 3.4536 0.7255 -0.0005 5 6 3.6025 -0.6066 0.0043 6 6 4.9022 -1.3693 0.0115 7 6 2.3539 -1.1319 -0.0005 8 6 1.9592 -2.5863 0.0001 9 6 1.8243 -3.0788 -1.4422 10 7 1.4400 -4.4924 -1.4417 11 6 1.2618 -5.1428 -2.6086 12 8 1.4202 -4.5575 -3.6597 13 6 0.8692 -6.5848 -2.6080 14 8 0.6208 -7.1456 -1.5609 15 7 0.7910 -7.2624 -3.7704 16 6 0.3003 -8.6428 -3.7821 17 6 0.4233 -9.2158 -5.1953 18 6 -0.4407 -8.5587 -6.2406 19 1 -0.0355 -7.7718 -6.8594 20 6 -1.7469 -8.9662 -6.4109 21 7 -2.2119 -9.9873 -5.7250 22 14 -2.8560 -8.0677 -7.6159 23 1 -2.0982 -6.9635 -8.2575 24 1 -3.3257 -9.0158 -8.6579 25 1 -4.0258 -7.5099 -6.8908 26 6 1.7976 -9.7260 -5.6336 27 6 0.6735 -10.7193 -5.3288 28 1 -0.3634 -0.0004 1.0276 29 1 -0.3634 0.8901 -0.5134 30 1 -0.3634 -0.8899 -0.5141 31 1 5.2201 -1.5549 -1.0145 32 1 5.6636 -0.7849 0.5278 33 1 4.7628 -2.3200 0.5261 34 1 1.0055 -2.7036 0.5148 35 1 2.7232 -3.1701 0.5134 36 1 2.7779 -2.9613 -1.9569 37 1 1.0601 -2.4950 -1.9555 38 1 1.3130 -4.9602 -0.6014 39 1 1.0595 -6.8361 -4.5993 40 1 -0.7447 -8.6595 -3.4730 41 1 0.8927 -9.2448 -3.0931 42 1 -3.1069 -10.3198 -5.8966 43 1 2.0767 -9.5865 -6.6781 44 1 2.6139 -9.6539 -4.9150 45 1 0.7508 -11.3002 -4.4096 46 1 0.2126 -11.2333 -6.1723 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117723237.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:35 Heat of formation + Delta-G solvation = -20.845158 kcal Electronic energy + Delta-G solvation = -27973.095973 eV Core-core repulsion = 23865.738325 eV Total energy + Delta-G solvation = -4107.357648 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -45.94160 -41.62477 -39.72242 -38.44638 -37.51473 -35.80138 -34.94064 -34.48306 -33.95596 -31.46835 -29.63029 -28.87349 -28.28693 -27.40370 -25.79534 -23.76493 -22.88371 -22.41904 -21.42439 -21.26840 -20.93484 -19.50944 -18.70845 -18.07454 -17.99983 -17.67112 -17.12789 -16.66356 -16.56566 -16.14975 -16.06372 -15.53356 -15.17412 -15.07486 -14.73405 -14.41696 -14.32765 -14.18984 -13.93743 -13.86062 -13.65412 -13.48908 -13.46861 -13.21954 -13.04153 -12.93939 -12.86748 -12.73552 -12.52422 -12.35591 -12.00223 -11.83639 -11.40985 -10.96318 -10.86252 -10.73911 -10.45306 -10.32690 -10.13471 -10.07758 -9.94363 -8.10716 -6.24035 0.40065 0.47631 1.11931 1.39451 1.43570 1.44741 1.53478 2.19261 2.21235 2.41751 2.73438 3.16990 3.23075 3.45034 3.50961 3.62065 3.79347 3.92776 4.05891 4.21488 4.25874 4.39517 4.46085 4.53296 4.62754 4.64299 4.70254 4.70558 4.71463 4.79118 4.88657 4.92184 4.93969 5.03739 5.04615 5.15836 5.17238 5.30169 5.32250 5.37049 5.54467 5.69814 5.77949 6.01344 6.36498 6.48965 6.79854 6.84075 7.02446 7.30349 7.45760 8.95961 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002158 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.806619 B =12968.873355 C =13783.034739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.017 3.983 3 N -0.403 5.403 4 O 0.079 5.921 5 C -0.018 4.018 6 C -0.078 4.078 7 C -0.211 4.211 8 C -0.041 4.041 9 C 0.124 3.876 10 N -0.684 5.684 11 C 0.515 3.485 12 O -0.543 6.543 13 C 0.497 3.503 14 O -0.554 6.554 15 N -0.671 5.671 16 C 0.175 3.825 17 C -0.004 4.004 18 C -0.506 4.506 19 H 0.057 0.943 20 C 0.028 3.972 21 N -0.903 5.903 22 Si 0.944 3.056 23 H -0.268 1.268 24 H -0.281 1.281 25 H -0.286 1.286 26 C -0.180 4.180 27 C -0.146 4.146 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.111 0.889 34 H 0.100 0.900 35 H 0.111 0.889 36 H 0.075 0.925 37 H 0.062 0.938 38 H 0.423 0.577 39 H 0.414 0.586 40 H 0.040 0.960 41 H 0.057 0.943 42 H 0.260 0.740 43 H 0.081 0.919 44 H 0.091 0.909 45 H 0.076 0.924 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.029 15.360 14.655 24.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.142 4.142 3 N -0.112 5.112 4 O 0.018 5.982 5 C -0.082 4.082 6 C -0.135 4.135 7 C -0.215 4.215 8 C -0.079 4.079 9 C 0.001 3.999 10 N -0.338 5.338 11 C 0.295 3.705 12 O -0.420 6.420 13 C 0.277 3.723 14 O -0.434 6.434 15 N -0.320 5.320 16 C 0.052 3.948 17 C -0.004 4.004 18 C -0.544 4.544 19 H 0.075 0.925 20 C -0.173 4.173 21 N -0.540 5.540 22 Si 0.770 3.230 23 H -0.192 1.192 24 H -0.207 1.207 25 H -0.212 1.212 26 C -0.218 4.218 27 C -0.184 4.184 28 H 0.113 0.887 29 H 0.092 0.908 30 H 0.111 0.889 31 H 0.117 0.883 32 H 0.115 0.885 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.130 0.870 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.261 0.739 39 H 0.251 0.749 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.100 0.900 44 H 0.110 0.890 45 H 0.094 0.906 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.568 16.642 14.704 25.040 hybrid contribution -1.150 -0.453 -0.884 1.520 sum 10.418 16.189 13.820 23.699 Atomic orbital electron populations 1.20306 0.84633 1.04377 1.04423 1.23976 1.00062 0.88690 1.01463 1.73851 0.89907 1.25203 1.22283 1.84767 1.21372 1.23795 1.68252 1.25011 0.99661 0.83157 1.00326 1.20623 0.88508 0.99039 1.05370 1.20821 0.91610 0.97208 1.11876 1.20008 1.04992 0.87976 0.94894 1.21483 1.01201 0.78976 0.98217 1.45616 1.67608 1.12294 1.08315 1.19985 0.78387 0.87211 0.84926 1.90770 1.50447 1.68671 1.32137 1.20331 0.79589 0.87892 0.84480 1.90700 1.50963 1.70183 1.31539 1.45813 1.61705 1.14897 1.09608 1.20821 0.97031 0.79931 0.97064 1.19082 0.94910 0.94322 0.92133 1.20686 0.95537 1.19903 1.18286 0.92475 1.25615 0.99032 0.95534 0.97083 1.70082 1.17764 1.25139 1.41063 0.85724 0.79069 0.79034 0.79137 1.19190 1.20733 1.21229 1.23022 0.91808 1.05854 1.01066 1.22400 1.01974 0.93142 1.00931 0.88701 0.90758 0.88886 0.88282 0.88462 0.87012 0.88204 0.87049 0.90701 0.91919 0.73891 0.74924 0.94162 0.92458 0.93073 0.90023 0.89043 0.90555 0.91706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 10.39 71.24 0.74 -0.34 16 2 C 0.02 0.31 7.33 43.57 0.32 0.63 16 3 N -0.40 -9.15 12.07 -49.57 -0.60 -9.74 16 4 O 0.08 1.58 11.20 71.64 0.80 2.39 16 5 C -0.02 -0.25 7.49 25.04 0.19 -0.06 16 6 C -0.08 -0.45 10.30 71.24 0.73 0.29 16 7 C -0.21 -3.05 5.58 -19.74 -0.11 -3.16 16 8 C -0.04 -0.41 5.66 29.85 0.17 -0.24 16 9 C 0.12 1.96 5.66 86.38 0.49 2.45 16 10 N -0.68 -13.55 5.55 -464.42 -2.58 -16.12 16 11 C 0.51 15.05 7.89 87.27 0.69 15.74 16 12 O -0.54 -18.69 16.50 -3.23 -0.05 -18.74 16 13 C 0.50 17.21 7.88 87.27 0.69 17.89 16 14 O -0.55 -20.60 16.47 -3.24 -0.05 -20.65 16 15 N -0.67 -25.60 5.46 -464.43 -2.54 -28.13 16 16 C 0.17 7.54 5.53 86.38 0.48 8.02 16 17 C 0.00 -0.17 1.47 -52.93 -0.08 -0.25 16 18 C -0.51 -25.96 8.59 25.60 0.22 -25.74 16 19 H 0.06 2.92 7.82 -2.91 -0.02 2.90 16 20 C 0.03 1.50 5.43 84.65 0.46 1.96 16 21 N -0.90 -49.80 12.65 21.45 0.27 -49.53 16 22 Si 0.94 42.52 29.54 68.60 2.03 44.54 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 24 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 25 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 26 C -0.18 -7.06 9.96 30.62 0.30 -6.75 16 27 C -0.15 -6.44 9.14 30.62 0.28 -6.16 16 28 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 33 H 0.11 0.24 7.43 -2.39 -0.02 0.22 16 34 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.11 0.61 7.44 -2.39 -0.02 0.60 16 36 H 0.07 1.22 8.14 -2.39 -0.02 1.21 16 37 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.42 6.83 7.96 -92.71 -0.74 6.09 16 39 H 0.41 15.77 7.84 -92.71 -0.73 15.04 16 40 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.06 2.33 8.05 -2.39 -0.02 2.31 16 42 H 0.26 13.80 8.32 -92.70 -0.77 13.03 16 43 H 0.08 3.16 8.14 -2.38 -0.02 3.14 16 44 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 45 H 0.08 3.13 8.14 -2.38 -0.02 3.11 16 46 H 0.06 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -67.62 399.74 2.41 -65.21 By element: Atomic # 1 Polarization: 26.97 SS G_CDS: -0.44 Total: 26.52 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 5.57 Total: 4.26 kcal Atomic # 7 Polarization: -98.09 SS G_CDS: -5.44 Total: -103.53 kcal Atomic # 8 Polarization: -37.70 SS G_CDS: 0.70 Total: -37.01 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Total: -67.62 2.41 -65.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117723237.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.369 kcal (2) G-P(sol) polarization free energy of solvation -67.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds