Wall clock time and date at job start Tue Mar 31 2020 19:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35281 * 126.70863 * 2 1 4 4 C 1.41926 * 103.95959 * 179.97438 * 3 2 1 5 5 O 1.35712 * 126.87981 * 180.02562 * 4 3 2 6 6 C 1.42899 * 117.00242 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47075 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99750 * 180.02562 * 9 7 6 11 11 C 1.53941 * 113.57807 * 252.71849 * 10 9 7 12 12 C 1.52913 * 86.78410 * 220.66280 * 11 10 9 13 13 C 1.52906 * 121.13678 * 150.61500 * 12 11 10 14 14 C 1.53947 * 86.78174 * 100.82693 * 13 12 11 15 15 N 1.46500 * 113.58128 * 139.33587 * 14 13 12 16 16 C 1.36936 * 119.99835 * 107.27819 * 15 14 13 17 17 H 1.07997 * 120.00598 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99754 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00027 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47228 * 89.99828 * 20 18 16 22 22 H 1.48505 * 109.47319 * 209.99738 * 20 18 16 23 23 H 1.48501 * 109.47222 * 329.99908 * 20 18 16 24 24 C 1.52903 * 121.13940 * 259.18482 * 12 11 10 25 25 C 1.52913 * 88.03816 * 24.90057 * 12 11 10 26 26 N 1.30624 * 106.24275 * 0.02562 * 4 3 2 27 27 O 1.20910 * 111.50055 * 359.97438 * 26 4 3 28 28 H 1.09001 * 109.47070 * 90.00046 * 1 2 3 29 29 H 1.08999 * 109.47345 * 209.99872 * 1 2 3 30 30 H 1.09003 * 109.47662 * 330.00638 * 1 2 3 31 31 H 1.07997 * 128.01485 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47231 * 299.99959 * 6 5 4 33 33 H 1.09007 * 109.46797 * 59.99915 * 6 5 4 34 34 H 0.96998 * 119.99825 * 0.02562 * 9 7 6 35 35 H 1.09007 * 112.82091 * 23.91242 * 10 9 7 36 36 H 1.09003 * 113.66802 * 335.13727 * 11 10 9 37 37 H 1.09007 * 113.66496 * 106.19685 * 11 10 9 38 38 H 1.09009 * 113.66238 * 215.29866 * 13 12 11 39 39 H 1.08998 * 113.66512 * 346.35065 * 13 12 11 40 40 H 1.08995 * 113.57794 * 270.12708 * 14 13 12 41 41 H 0.96996 * 119.99833 * 287.27601 * 15 14 13 42 42 H 0.96999 * 119.99942 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.66697 * 13.64323 * 24 12 11 44 44 H 1.08995 * 113.66698 * 144.61088 * 24 12 11 45 45 H 1.09002 * 113.65804 * 220.63167 * 25 12 11 46 46 H 1.08997 * 113.74560 * 89.58761 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5357 0.0006 5 8 4.7953 1.2219 0.0013 6 6 5.9988 0.4514 0.0024 7 6 7.1879 1.3772 0.0025 8 8 7.0211 2.5785 0.0021 9 7 8.4367 0.8701 0.0029 10 6 9.5926 1.7701 0.0035 11 6 10.3365 1.8179 -1.3434 12 6 11.6313 1.8262 -0.5299 13 6 12.9207 1.2245 -1.0898 14 6 13.3521 2.6670 -1.4107 15 7 14.7651 2.9325 -1.1292 16 6 15.6539 3.0739 -2.1613 17 1 15.3133 2.9901 -3.1827 18 6 16.9929 3.3249 -1.8946 19 7 17.4080 3.4275 -0.6498 20 14 18.2053 3.5185 -3.3024 21 1 18.2740 4.9466 -3.7036 22 1 19.5490 3.0621 -2.8648 23 1 17.7568 2.7008 -4.4579 24 6 12.4040 3.1230 -0.2867 25 6 10.8638 1.1393 0.6003 26 7 3.4764 -0.7621 0.0003 27 8 2.3085 -1.0749 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 2.0310 2.1263 -0.0004 32 1 6.0271 -0.1770 0.8926 33 1 6.0284 -0.1775 -0.8874 34 1 8.5700 -0.0906 0.0028 35 1 9.3618 2.7545 0.4108 36 1 10.2053 0.9203 -1.9478 37 1 10.1667 2.7368 -1.9047 38 1 13.5408 0.7399 -0.3355 39 1 12.7670 0.6066 -1.9745 40 1 13.0470 3.0030 -2.4016 41 1 15.0710 3.0081 -0.2119 42 1 18.3435 3.6033 -0.4634 43 1 11.8376 4.0220 -0.5300 44 1 12.8775 3.1729 0.6937 45 1 11.1152 1.5161 1.5918 46 1 10.8802 0.0509 0.5437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001121267115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:24 Heat of formation + Delta-G solvation = 50.290069 kcal Electronic energy + Delta-G solvation = -27199.682576 eV Core-core repulsion = 23095.409583 eV Total energy + Delta-G solvation = -4104.272993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -45.33772 -40.74595 -39.82506 -38.56565 -35.92012 -34.32282 -33.75858 -32.99323 -32.30736 -29.76185 -28.93293 -28.17699 -25.82159 -25.25553 -24.18929 -23.86436 -22.88783 -21.63529 -20.81975 -20.06854 -18.49765 -18.30374 -17.84923 -17.36303 -17.15867 -16.98679 -16.59196 -16.27077 -15.26447 -14.98478 -14.75521 -14.58444 -14.38820 -14.15142 -14.01719 -13.80463 -13.51047 -13.38497 -12.98465 -12.83454 -12.64302 -12.45257 -12.28805 -12.05845 -11.68696 -11.57884 -11.35052 -11.00286 -10.91226 -10.72265 -10.41888 -10.14696 -10.03356 -9.99461 -9.81468 -9.72891 -9.65848 -9.39623 -9.19227 -8.85546 -6.94632 -5.77519 -3.05916 0.94331 1.81852 1.89791 2.22103 2.61952 3.12093 3.43414 3.48684 3.50209 3.71901 4.24127 4.29639 4.45572 4.50610 4.53900 4.57761 4.59256 4.67790 4.72181 4.74393 4.81531 4.85330 5.06266 5.18195 5.38079 5.41551 5.43260 5.51984 5.67776 5.75663 5.88617 5.91252 5.96168 6.02719 6.17419 6.21055 6.36219 6.39284 6.42466 6.51657 6.63470 6.91783 7.12442 7.17836 7.70531 7.77294 7.86154 8.41406 9.52430 10.11119 10.45523 11.45033 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.049441 B = 0.001450 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.193838 B =19303.126767 C =19339.515724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.007 4.007 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.255 6.255 6 C 0.044 3.956 7 C 0.516 3.484 8 O -0.516 6.516 9 N -0.713 5.713 10 C 0.124 3.876 11 C -0.124 4.124 12 C -0.102 4.102 13 C -0.148 4.148 14 C 0.168 3.832 15 N -0.713 5.713 16 C -0.243 4.243 17 H 0.071 0.929 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.907 3.093 21 H -0.290 1.290 22 H -0.291 1.291 23 H -0.282 1.282 24 C -0.129 4.129 25 C -0.129 4.129 26 N -0.412 5.412 27 O 0.098 5.902 28 H 0.092 0.908 29 H 0.087 0.913 30 H 0.095 0.905 31 H 0.180 0.820 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.402 0.598 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.079 0.921 39 H 0.054 0.946 40 H 0.074 0.926 41 H 0.385 0.615 42 H 0.255 0.745 43 H 0.061 0.939 44 H 0.082 0.918 45 H 0.074 0.926 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.448 -10.176 3.497 36.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.071 4.071 3 C -0.255 4.255 4 C 0.015 3.985 5 O -0.160 6.160 6 C -0.034 4.034 7 C 0.300 3.700 8 O -0.391 6.391 9 N -0.365 5.365 10 C 0.020 3.980 11 C -0.163 4.163 12 C -0.103 4.103 13 C -0.189 4.189 14 C 0.056 3.944 15 N -0.351 5.351 16 C -0.374 4.374 17 H 0.089 0.911 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.168 4.168 25 C -0.168 4.168 26 N -0.140 5.140 27 O 0.038 5.962 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.113 0.887 31 H 0.197 0.803 32 H 0.115 0.885 33 H 0.115 0.885 34 H 0.236 0.764 35 H 0.134 0.866 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.073 0.927 40 H 0.092 0.908 41 H 0.219 0.781 42 H 0.065 0.935 43 H 0.080 0.920 44 H 0.100 0.900 45 H 0.093 0.907 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -33.524 -9.960 3.333 35.131 hybrid contribution 0.762 0.170 -0.410 0.882 sum -32.762 -9.790 2.923 34.319 Atomic orbital electron populations 1.20400 0.83390 1.05026 1.04504 1.24373 0.96529 0.85506 1.00679 1.21827 0.88247 1.01807 1.13578 1.22055 0.88407 0.88069 0.99930 1.86293 1.09965 1.30684 1.89094 1.22512 0.82441 0.93686 1.04807 1.19932 0.83967 0.89028 0.77053 1.90774 1.85523 1.15123 1.47681 1.45905 1.04900 1.10584 1.75106 1.22731 0.82308 0.94898 0.98058 1.23154 0.94302 1.02683 0.96160 1.22071 0.93123 0.99062 0.96050 1.23640 0.94477 1.00807 1.00000 1.21540 0.84903 0.92171 0.95775 1.42415 1.01848 1.84209 1.06658 1.19318 0.89002 1.40923 0.88167 0.91112 1.24755 0.97201 1.02686 0.96278 1.69660 1.15417 1.56053 1.17017 0.86196 0.80879 0.77764 0.81400 1.21695 1.21771 1.20749 1.23219 0.97686 0.94691 1.01201 1.23189 0.94026 1.00276 0.99272 1.74159 0.98033 1.14152 1.27642 1.84789 1.10272 1.32009 1.69130 0.88987 0.89453 0.88676 0.80304 0.88537 0.88514 0.76351 0.86610 0.89755 0.90797 0.90256 0.92701 0.90776 0.78115 0.93491 0.92031 0.89979 0.90694 0.89753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.11 10.45 36.00 0.38 0.26 16 2 C -0.01 -0.04 7.48 -35.37 -0.26 -0.31 16 3 C -0.23 -1.77 11.11 -39.22 -0.44 -2.21 16 4 C 0.21 2.22 8.01 -16.65 -0.13 2.09 16 5 O -0.26 -3.02 9.74 -38.75 -0.38 -3.40 16 6 C 0.04 0.41 6.14 36.01 0.22 0.63 16 7 C 0.52 5.93 7.91 -10.98 -0.09 5.84 16 8 O -0.52 -8.30 16.10 -14.35 -0.23 -8.53 16 9 N -0.71 -6.66 5.35 -52.86 -0.28 -6.94 16 10 C 0.12 1.40 4.24 -66.95 -0.28 1.12 16 11 C -0.12 -1.52 7.64 -26.29 -0.20 -1.72 16 12 C -0.10 -1.40 1.11 -154.71 -0.17 -1.57 16 13 C -0.15 -2.49 7.64 -26.29 -0.20 -2.69 16 14 C 0.17 3.32 4.48 -66.95 -0.30 3.02 16 15 N -0.71 -17.94 5.40 -52.47 -0.28 -18.23 16 16 C -0.24 -6.78 9.97 -15.06 -0.15 -6.93 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.93 -28.25 13.06 55.49 0.72 -27.53 16 20 Si 0.91 22.44 29.55 -169.99 -5.02 17.41 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 C -0.13 -2.12 7.59 -26.28 -0.20 -2.32 16 25 C -0.13 -1.44 7.59 -26.28 -0.20 -1.64 16 26 N -0.41 -4.20 11.54 30.38 0.35 -3.85 16 27 O 0.10 0.83 11.19 17.05 0.19 1.02 16 28 H 0.09 0.04 8.14 -51.93 -0.42 -0.39 16 29 H 0.09 0.04 8.14 -51.93 -0.42 -0.38 16 30 H 0.09 0.01 8.14 -51.93 -0.42 -0.41 16 31 H 0.18 0.99 8.06 -52.49 -0.42 0.57 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.40 2.51 8.73 -40.82 -0.36 2.15 16 35 H 0.12 1.53 7.47 -51.93 -0.39 1.14 16 36 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.08 1.42 8.14 -51.92 -0.42 1.00 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.48 8.10 -51.93 -0.42 1.06 16 41 H 0.38 10.24 7.92 -40.82 -0.32 9.92 16 42 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 43 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.08 1.38 8.12 -51.93 -0.42 0.96 16 45 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.08 0.82 8.12 -51.93 -0.42 0.39 16 LS Contribution 392.31 15.07 5.91 5.91 Total: -1.00 -35.17 392.31 -8.10 -43.26 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.95 Total: 7.76 kcal Atomic # 6 Polarization: -4.76 SS G_CDS: -2.13 Total: -6.89 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: 0.51 Total: -56.55 kcal Atomic # 8 Polarization: -10.50 SS G_CDS: -0.42 Total: -10.92 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.41 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.17 -8.10 -43.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121267115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.552 kcal (2) G-P(sol) polarization free energy of solvation -35.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds