Wall clock time and date at job start Tue Mar 31 2020 19:02:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35281 * 126.70863 * 2 1 4 4 C 1.41926 * 103.95959 * 179.97438 * 3 2 1 5 5 O 1.35712 * 126.87981 * 180.02562 * 4 3 2 6 6 C 1.42899 * 117.00242 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47075 * 179.97438 * 6 5 4 8 8 O 1.21279 * 119.99868 * 0.02562 * 7 6 5 9 9 N 1.34778 * 119.99735 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99750 * 180.02562 * 9 7 6 11 11 C 1.53941 * 113.57807 * 252.71849 * 10 9 7 12 12 C 1.52913 * 86.78410 * 220.66280 * 11 10 9 13 13 C 1.52906 * 121.13678 * 150.61500 * 12 11 10 14 14 C 1.53947 * 86.78174 * 100.82693 * 13 12 11 15 15 N 1.46500 * 113.58128 * 139.33587 * 14 13 12 16 16 C 1.36936 * 119.99835 * 107.27819 * 15 14 13 17 17 H 1.07997 * 120.00598 * 0.02562 * 16 15 14 18 18 C 1.38817 * 119.99754 * 180.02562 * 16 15 14 19 19 N 1.31618 * 120.00027 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99997 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47228 * 89.99828 * 20 18 16 22 22 H 1.48505 * 109.47319 * 209.99738 * 20 18 16 23 23 H 1.48501 * 109.47222 * 329.99908 * 20 18 16 24 24 C 1.52903 * 121.13940 * 259.18482 * 12 11 10 25 25 C 1.52913 * 88.03816 * 24.90057 * 12 11 10 26 26 N 1.30624 * 106.24275 * 0.02562 * 4 3 2 27 27 O 1.20910 * 111.50055 * 359.97438 * 26 4 3 28 28 H 1.09001 * 109.47070 * 90.00046 * 1 2 3 29 29 H 1.08999 * 109.47345 * 209.99872 * 1 2 3 30 30 H 1.09003 * 109.47662 * 330.00638 * 1 2 3 31 31 H 1.07997 * 128.01485 * 359.97438 * 3 2 1 32 32 H 1.08998 * 109.47231 * 299.99959 * 6 5 4 33 33 H 1.09007 * 109.46797 * 59.99915 * 6 5 4 34 34 H 0.96998 * 119.99825 * 0.02562 * 9 7 6 35 35 H 1.09007 * 112.82091 * 23.91242 * 10 9 7 36 36 H 1.09003 * 113.66802 * 335.13727 * 11 10 9 37 37 H 1.09007 * 113.66496 * 106.19685 * 11 10 9 38 38 H 1.09009 * 113.66238 * 215.29866 * 13 12 11 39 39 H 1.08998 * 113.66512 * 346.35065 * 13 12 11 40 40 H 1.08995 * 113.57794 * 270.12708 * 14 13 12 41 41 H 0.96996 * 119.99833 * 287.27601 * 15 14 13 42 42 H 0.96999 * 119.99942 * 180.02562 * 19 18 16 43 43 H 1.09000 * 113.66697 * 13.64323 * 24 12 11 44 44 H 1.08995 * 113.66698 * 144.61088 * 24 12 11 45 45 H 1.09002 * 113.65804 * 220.63167 * 25 12 11 46 46 H 1.08997 * 113.74560 * 89.58761 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6244 0.5357 0.0006 5 8 4.7953 1.2219 0.0013 6 6 5.9988 0.4514 0.0024 7 6 7.1879 1.3772 0.0025 8 8 7.0211 2.5785 0.0021 9 7 8.4367 0.8701 0.0029 10 6 9.5926 1.7701 0.0035 11 6 10.3365 1.8179 -1.3434 12 6 11.6313 1.8262 -0.5299 13 6 12.9207 1.2245 -1.0898 14 6 13.3521 2.6670 -1.4107 15 7 14.7651 2.9325 -1.1292 16 6 15.6539 3.0739 -2.1613 17 1 15.3133 2.9901 -3.1827 18 6 16.9929 3.3249 -1.8946 19 7 17.4080 3.4275 -0.6498 20 14 18.2053 3.5185 -3.3024 21 1 18.2740 4.9466 -3.7036 22 1 19.5490 3.0621 -2.8648 23 1 17.7568 2.7008 -4.4579 24 6 12.4040 3.1230 -0.2867 25 6 10.8638 1.1393 0.6003 26 7 3.4764 -0.7621 0.0003 27 8 2.3085 -1.0749 0.0002 28 1 -0.3633 0.0000 -1.0277 29 1 -0.3634 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5137 31 1 2.0310 2.1263 -0.0004 32 1 6.0271 -0.1770 0.8926 33 1 6.0284 -0.1775 -0.8874 34 1 8.5700 -0.0906 0.0028 35 1 9.3618 2.7545 0.4108 36 1 10.2053 0.9203 -1.9478 37 1 10.1667 2.7368 -1.9047 38 1 13.5408 0.7399 -0.3355 39 1 12.7670 0.6066 -1.9745 40 1 13.0470 3.0030 -2.4016 41 1 15.0710 3.0081 -0.2119 42 1 18.3435 3.6033 -0.4634 43 1 11.8376 4.0220 -0.5300 44 1 12.8775 3.1729 0.6937 45 1 11.1152 1.5161 1.5918 46 1 10.8802 0.0509 0.5437 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001121267115.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:23 Heat of formation + Delta-G solvation = 25.294245 kcal Electronic energy + Delta-G solvation = -27200.766477 eV Core-core repulsion = 23095.409583 eV Total energy + Delta-G solvation = -4105.356893 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.95435 -41.78967 -40.80486 -39.46744 -37.26458 -35.32390 -34.79052 -33.82718 -33.51778 -31.53858 -29.77302 -28.56876 -26.79876 -26.66302 -26.04612 -24.49069 -24.07100 -22.47376 -21.67513 -21.44822 -19.50228 -19.10765 -18.94311 -18.61060 -18.08873 -17.91298 -17.35300 -17.19392 -16.87750 -16.11236 -15.92356 -15.75226 -15.42931 -15.26479 -14.90452 -14.60802 -14.37937 -14.12069 -13.91683 -13.68168 -13.65585 -13.51131 -13.24145 -13.13130 -12.97559 -12.87306 -12.83166 -12.38279 -12.28816 -12.14345 -12.06906 -11.91597 -11.44772 -11.08881 -11.08251 -10.81734 -10.74123 -10.52652 -10.29410 -10.13773 -8.97590 -7.95227 -5.23248 0.42603 1.17711 1.17985 1.33669 1.46628 1.48260 1.56632 2.13964 2.40499 2.56094 3.09838 3.36001 3.45417 3.47752 3.52569 3.67320 3.77718 3.83783 3.94114 3.95158 3.97208 3.98841 4.27367 4.32627 4.37666 4.44976 4.60133 4.77373 4.77901 4.79132 4.80138 4.90494 4.92366 4.99404 5.00377 5.07250 5.08232 5.23790 5.26956 5.43216 5.50458 5.57889 5.69337 5.80571 6.27444 6.38435 7.03909 7.19220 7.33096 8.10989 8.33921 9.28267 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.049441 B = 0.001450 C = 0.001447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.193838 B =19303.126767 C =19339.515724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.011 3.989 3 C -0.253 4.253 4 C 0.191 3.809 5 O -0.282 6.282 6 C 0.048 3.952 7 C 0.517 3.483 8 O -0.569 6.569 9 N -0.695 5.695 10 C 0.130 3.870 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.136 4.136 14 C 0.145 3.855 15 N -0.729 5.729 16 C -0.245 4.245 17 H 0.075 0.925 18 C -0.076 4.076 19 N -0.971 5.971 20 Si 0.972 3.028 21 H -0.288 1.288 22 H -0.295 1.295 23 H -0.269 1.269 24 C -0.124 4.124 25 C -0.115 4.115 26 N -0.430 5.430 27 O 0.090 5.910 28 H 0.108 0.892 29 H 0.101 0.899 30 H 0.113 0.887 31 H 0.194 0.806 32 H 0.117 0.883 33 H 0.116 0.884 34 H 0.421 0.579 35 H 0.096 0.904 36 H 0.103 0.897 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.069 0.931 41 H 0.373 0.627 42 H 0.251 0.749 43 H 0.064 0.936 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -36.914 -11.908 2.953 38.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 C -0.275 4.275 4 C -0.006 4.006 5 O -0.188 6.188 6 C -0.030 4.030 7 C 0.303 3.697 8 O -0.447 6.447 9 N -0.348 5.348 10 C 0.025 3.975 11 C -0.158 4.158 12 C -0.092 4.092 13 C -0.177 4.177 14 C 0.035 3.965 15 N -0.367 5.367 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.268 4.268 19 N -0.621 5.621 20 Si 0.801 3.199 21 H -0.215 1.215 22 H -0.221 1.221 23 H -0.194 1.194 24 C -0.162 4.162 25 C -0.153 4.153 26 N -0.158 5.158 27 O 0.031 5.969 28 H 0.127 0.873 29 H 0.119 0.881 30 H 0.131 0.869 31 H 0.211 0.789 32 H 0.134 0.866 33 H 0.133 0.867 34 H 0.259 0.741 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.082 0.918 38 H 0.086 0.914 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.205 0.795 42 H 0.060 0.940 43 H 0.083 0.917 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -36.043 -11.757 2.766 38.013 hybrid contribution 1.388 0.695 -0.255 1.573 sum -34.655 -11.062 2.511 36.464 Atomic orbital electron populations 1.20682 0.79997 1.06590 1.05976 1.25122 0.98019 0.84117 0.97959 1.22183 0.87508 1.03137 1.14671 1.22421 0.88688 0.88605 1.00896 1.86240 1.10963 1.32032 1.89518 1.22575 0.80870 0.92936 1.06599 1.20342 0.84930 0.88578 0.75853 1.90754 1.86282 1.17409 1.50258 1.45698 1.03787 1.11390 1.73892 1.22448 0.83022 0.94607 0.97417 1.23187 0.92970 1.03164 0.96511 1.21882 0.92566 0.96763 0.97941 1.23388 0.95655 0.98498 1.00163 1.21935 0.82845 0.94896 0.96788 1.42600 1.03722 1.84858 1.05492 1.19716 0.89709 1.39218 0.89025 0.90677 1.25555 0.99050 1.03596 0.98604 1.69815 1.15346 1.57994 1.18987 0.85160 0.78246 0.77656 0.78840 1.21525 1.22149 1.19389 1.23087 0.97188 0.96519 0.99454 1.23160 0.92387 1.01572 0.98211 1.74132 0.99035 1.14173 1.28490 1.84744 1.10131 1.32914 1.69109 0.87326 0.88061 0.86887 0.78861 0.86562 0.86660 0.74081 0.88551 0.87840 0.91805 0.91426 0.91807 0.91311 0.79474 0.94042 0.91694 0.90635 0.90480 0.87140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.00 10.45 71.23 0.74 0.74 16 2 C 0.01 0.11 7.48 25.00 0.19 0.30 16 3 C -0.25 -3.63 11.11 22.50 0.25 -3.38 16 4 C 0.19 3.90 8.01 85.79 0.69 4.59 16 5 O -0.28 -6.62 9.74 -71.30 -0.69 -7.32 16 6 C 0.05 0.83 6.14 71.24 0.44 1.27 16 7 C 0.52 11.35 7.91 87.66 0.69 12.04 16 8 O -0.57 -18.42 16.10 16.01 0.26 -18.16 16 9 N -0.69 -11.40 5.35 -439.53 -2.35 -13.75 16 10 C 0.13 2.70 4.24 45.62 0.19 2.90 16 11 C -0.12 -2.68 7.64 30.88 0.24 -2.44 16 12 C -0.09 -2.34 1.11 -52.31 -0.06 -2.40 16 13 C -0.14 -4.43 7.64 30.88 0.24 -4.20 16 14 C 0.14 5.75 4.48 45.63 0.20 5.95 16 15 N -0.73 -37.40 5.40 -319.93 -1.73 -39.13 16 16 C -0.24 -13.81 9.97 84.03 0.84 -12.97 16 17 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 18 C -0.08 -4.41 5.50 84.86 0.47 -3.95 16 19 N -0.97 -60.09 13.06 21.65 0.28 -59.80 16 20 Si 0.97 46.58 29.55 68.60 2.03 48.61 16 21 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.48 16 23 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 24 C -0.12 -4.04 7.59 30.88 0.23 -3.81 16 25 C -0.12 -2.27 7.59 30.89 0.23 -2.04 16 26 N -0.43 -8.42 11.54 -172.58 -1.99 -10.42 16 27 O 0.09 1.42 11.19 71.19 0.80 2.21 16 28 H 0.11 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H 0.10 -0.22 8.14 -2.39 -0.02 -0.24 16 30 H 0.11 -0.34 8.14 -2.39 -0.02 -0.36 16 31 H 0.19 1.96 8.06 -2.91 -0.02 1.94 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.12 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.42 3.80 8.73 -92.71 -0.81 2.99 16 35 H 0.10 2.48 7.47 -2.38 -0.02 2.47 16 36 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.07 2.38 8.14 -2.38 -0.02 2.36 16 39 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.07 2.77 8.10 -2.39 -0.02 2.75 16 41 H 0.37 20.51 7.92 -92.71 -0.73 19.77 16 42 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 43 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 44 H 0.08 2.57 8.12 -2.39 -0.02 2.55 16 45 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.11 1.68 8.12 -2.39 -0.02 1.66 16 Total: -1.00 -78.71 392.31 1.65 -77.06 By element: Atomic # 1 Polarization: 28.61 SS G_CDS: -0.53 Total: 28.08 kcal Atomic # 6 Polarization: -12.97 SS G_CDS: 5.58 Total: -7.38 kcal Atomic # 7 Polarization: -117.31 SS G_CDS: -5.79 Total: -123.10 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.36 Total: -23.27 kcal Atomic # 14 Polarization: 46.58 SS G_CDS: 2.03 Total: 48.61 kcal Total: -78.71 1.65 -77.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001121267115.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.356 kcal (2) G-P(sol) polarization free energy of solvation -78.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds