Wall clock time and date at job start Tue Mar 31 2020 18:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.35451 * 126.77352 * 2 1 4 4 C 1.41379 * 103.98341 * 180.02562 * 3 2 1 5 5 C 1.50701 * 126.80419 * 180.02562 * 4 3 2 6 6 O 1.42908 * 109.46681 * 359.97438 * 5 4 3 7 7 C 1.42901 * 113.99626 * 180.02562 * 6 5 4 8 8 C 1.50704 * 109.46823 * 179.97438 * 7 6 5 9 9 O 1.21281 * 119.99825 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99515 * 179.97438 * 8 7 6 11 11 C 1.47405 * 125.59581 * 359.97438 * 10 8 7 12 12 C 1.54852 * 104.81870 * 204.43803 * 11 10 8 13 13 C 1.55171 * 101.73380 * 322.76386 * 12 11 10 14 14 H 1.09000 * 113.26071 * 158.95911 * 13 12 11 15 15 C 1.53752 * 108.30951 * 285.39105 * 13 12 11 16 16 N 1.46593 * 108.11037 * 124.37533 * 15 13 12 17 17 C 1.36931 * 125.31110 * 181.28598 * 16 15 13 18 18 H 1.08002 * 120.00438 * 0.02562 * 17 16 15 19 19 C 1.38817 * 119.99680 * 179.72091 * 17 16 15 20 20 N 1.31614 * 119.99888 * 0.27479 * 19 17 16 21 21 Si 1.86803 * 119.99862 * 180.27671 * 19 17 16 22 22 H 1.48498 * 109.47174 * 90.00121 * 21 19 17 23 23 H 1.48501 * 109.47062 * 210.00072 * 21 19 17 24 24 H 1.48504 * 109.46913 * 329.99871 * 21 19 17 25 25 C 1.46715 * 109.37493 * 1.54608 * 16 15 13 26 26 C 1.46711 * 125.58562 * 180.02562 * 10 8 7 27 27 H 1.09000 * 111.53310 * 56.06193 * 26 10 8 28 28 N 1.30176 * 106.39715 * 0.25990 * 4 3 2 29 29 O 1.20920 * 111.60144 * 359.53615 * 28 4 3 30 30 H 1.09008 * 109.47098 * 90.00710 * 1 2 3 31 31 H 1.09001 * 109.47179 * 209.99723 * 1 2 3 32 32 H 1.08993 * 109.47550 * 330.00411 * 1 2 3 33 33 H 1.07994 * 128.01009 * 0.05295 * 3 2 1 34 34 H 1.08998 * 109.46818 * 240.00041 * 5 4 3 35 35 H 1.09002 * 109.47393 * 119.99341 * 5 4 3 36 36 H 1.08990 * 109.47596 * 59.99407 * 7 6 5 37 37 H 1.09004 * 109.46785 * 299.99000 * 7 6 5 38 38 H 1.08998 * 110.37308 * 85.59387 * 11 10 8 39 39 H 1.09008 * 110.45611 * 323.32028 * 11 10 8 40 40 H 1.09002 * 110.97601 * 204.65388 * 12 11 10 41 41 H 1.09004 * 110.98319 * 80.87779 * 12 11 10 42 42 H 1.09000 * 109.74650 * 4.70244 * 15 13 12 43 43 H 1.09002 * 109.73648 * 244.03609 * 15 13 12 44 44 H 0.97005 * 119.99715 * 179.97438 * 20 19 17 45 45 H 1.09001 * 109.98490 * 101.14040 * 25 16 15 46 46 H 1.09001 * 109.98849 * 222.45203 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3179 1.0850 0.0000 4 6 3.6213 0.5373 -0.0006 5 6 4.9210 1.3001 -0.0003 6 8 4.6498 2.7032 0.0001 7 6 5.8213 3.5215 -0.0002 8 6 5.4194 4.9739 -0.0004 9 8 4.2454 5.2783 -0.0008 10 7 6.3647 5.9346 -0.0002 11 6 7.8209 5.7055 0.0008 12 6 8.4236 6.9905 0.6200 13 6 7.4946 8.0878 0.0363 14 1 7.5062 9.0129 0.6127 15 6 7.8584 8.2916 -1.4436 16 7 6.6445 8.0976 -2.2421 17 6 6.5750 8.1726 -3.6076 18 1 7.4631 8.3897 -4.1825 19 6 5.3641 7.9633 -4.2534 20 7 4.2819 7.6982 -3.5529 21 14 5.2708 8.0580 -6.1167 22 1 5.5273 6.7141 -6.6941 23 1 3.9192 8.5210 -6.5218 24 1 6.2917 9.0141 -6.6155 25 6 5.5144 7.8168 -1.3496 26 6 6.1131 7.3800 0.0002 27 1 5.4868 7.6768 0.8415 28 7 3.4763 -0.7563 -0.0066 29 8 2.3095 -1.0736 -0.0005 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8899 0.5137 33 1 2.0344 2.1271 0.0008 34 1 5.4942 1.0414 -0.8906 35 1 5.4946 1.0403 0.8894 36 1 6.4132 3.3085 -0.8903 37 1 6.4137 3.3082 0.8896 38 1 8.1841 5.5686 -1.0177 39 1 8.0695 4.8373 0.6113 40 1 9.4529 7.1358 0.2923 41 1 8.3621 6.9654 1.7081 42 1 8.6145 7.5647 -1.7404 43 1 8.2399 9.3016 -1.5931 44 1 3.4357 7.5523 -4.0042 45 1 4.9105 8.7148 -1.2193 46 1 4.9041 7.0136 -1.7625 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188307761.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:39:56 Heat of formation + Delta-G solvation = 28.153334 kcal Electronic energy + Delta-G solvation = -29316.259517 eV Core-core repulsion = 25211.026603 eV Total energy + Delta-G solvation = -4105.232914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.01759 -40.17270 -38.49986 -37.14608 -34.73837 -34.31457 -33.45396 -32.24293 -30.82840 -29.53227 -28.34369 -27.89458 -26.78431 -25.87609 -24.66083 -23.02096 -22.46528 -20.83731 -20.42698 -19.60248 -18.52180 -17.81652 -17.57422 -17.03048 -16.69322 -16.35473 -16.13936 -15.79413 -14.92858 -14.80212 -14.37376 -14.16352 -13.79476 -13.74040 -13.55593 -13.45925 -13.20898 -12.88244 -12.81072 -12.53029 -12.36563 -12.03154 -11.83403 -11.80275 -11.56860 -11.26905 -11.12658 -11.01320 -10.73645 -10.53313 -10.42097 -10.30103 -10.13299 -9.79799 -9.72040 -9.66224 -9.38230 -9.27453 -8.59038 -8.11218 -6.78684 -5.61228 -3.02849 1.34883 2.13576 2.72954 3.00780 3.07141 3.41477 3.45897 3.48998 3.65843 4.27517 4.48474 4.51787 4.69856 4.77068 4.89385 4.94250 5.02075 5.08956 5.11444 5.15422 5.18364 5.22891 5.30162 5.31282 5.49820 5.51404 5.57296 5.58300 5.69921 5.73605 5.76986 5.87098 6.01417 6.05193 6.22574 6.32160 6.49432 6.56284 6.65563 6.80321 6.93678 7.49736 7.67595 7.94370 8.00387 8.13037 8.42441 8.64490 9.25899 9.87455 10.49811 11.43087 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011084 B = 0.003124 C = 0.002635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2525.526361 B = 8959.985105 C =10622.417931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.042 4.042 3 C -0.201 4.201 4 C 0.020 3.980 5 C 0.143 3.857 6 O -0.354 6.354 7 C 0.053 3.947 8 C 0.530 3.470 9 O -0.510 6.510 10 N -0.599 5.599 11 C 0.100 3.900 12 C -0.123 4.123 13 C -0.110 4.110 14 H 0.097 0.903 15 C 0.142 3.858 16 N -0.600 5.600 17 C -0.232 4.232 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.913 5.913 21 Si 0.911 3.089 22 H -0.289 1.289 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.154 3.846 26 C 0.117 3.883 27 H 0.079 0.921 28 N -0.365 5.365 29 O 0.098 5.902 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.093 0.907 33 H 0.180 0.820 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.024 0.976 43 H 0.020 0.980 44 H 0.253 0.747 45 H 0.022 0.978 46 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.182 -12.322 11.924 17.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.105 4.105 3 C -0.223 4.223 4 C -0.138 4.138 5 C 0.065 3.935 6 O -0.271 6.271 7 C -0.027 4.027 8 C 0.316 3.684 9 O -0.384 6.384 10 N -0.335 5.335 11 C -0.024 4.024 12 C -0.162 4.162 13 C -0.129 4.129 14 H 0.115 0.885 15 C 0.016 3.984 16 N -0.326 5.326 17 C -0.360 4.360 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.560 5.560 21 Si 0.741 3.259 22 H -0.217 1.217 23 H -0.216 1.216 24 H -0.207 1.207 25 C 0.029 3.971 26 C 0.013 3.987 27 H 0.097 0.903 28 N -0.070 5.070 29 O 0.031 5.969 30 H 0.106 0.894 31 H 0.100 0.900 32 H 0.112 0.888 33 H 0.197 0.803 34 H 0.093 0.907 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.095 0.905 38 H 0.092 0.908 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.089 0.911 42 H 0.042 0.958 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 1.971 -13.185 11.739 17.763 hybrid contribution 0.048 0.799 -1.070 1.336 sum 2.019 -12.386 10.668 16.471 Atomic orbital electron populations 1.20328 0.83845 1.04573 1.04194 1.24537 0.96445 0.85931 1.03602 1.22514 0.90653 1.01647 1.07465 1.23117 0.97225 0.90063 1.03361 1.20300 0.90374 0.80895 1.01888 1.87968 1.29325 1.14297 1.95517 1.22206 0.88190 0.89896 1.02377 1.19486 0.85451 0.85774 0.77651 1.90750 1.17118 1.82615 1.47904 1.48144 1.05751 1.06370 1.73210 1.22326 0.80888 0.98007 1.01138 1.22789 0.99225 0.94262 0.99889 1.23062 0.94333 0.97627 0.97926 0.88513 1.21174 0.91142 0.97727 0.88356 1.44183 1.03044 1.83255 1.02111 1.18986 0.94727 1.42041 0.80283 0.90555 1.24829 0.95630 1.01856 0.97987 1.69902 0.99195 1.53831 1.33034 0.86141 0.76943 0.77593 0.85185 1.21674 1.21623 1.20744 1.21754 0.89937 1.00592 0.84861 1.22667 0.96370 0.78551 1.01072 0.90342 1.73752 0.97405 1.15316 1.20570 1.84779 1.11046 1.33221 1.67869 0.89376 0.90000 0.88846 0.80300 0.90698 0.90854 0.90062 0.90519 0.90850 0.91466 0.89984 0.91080 0.95812 0.96198 0.93621 0.96051 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.48 10.45 36.01 0.38 -0.10 16 2 C -0.04 -0.46 7.49 -35.30 -0.26 -0.73 16 3 C -0.20 -2.68 10.45 -39.38 -0.41 -3.09 16 4 C 0.02 0.28 7.28 -82.10 -0.60 -0.31 16 5 C 0.14 1.78 6.56 36.01 0.24 2.01 16 6 O -0.35 -5.52 9.37 -55.14 -0.52 -6.04 16 7 C 0.05 0.75 5.42 36.01 0.20 0.94 16 8 C 0.53 10.05 7.56 -10.98 -0.08 9.96 16 9 O -0.51 -12.04 16.23 -14.36 -0.23 -12.28 16 10 N -0.60 -10.56 3.02 -162.14 -0.49 -11.05 16 11 C 0.10 1.33 6.23 -2.57 -0.02 1.31 16 12 C -0.12 -1.47 6.30 -24.61 -0.16 -1.63 16 13 C -0.11 -1.75 4.25 -87.88 -0.37 -2.12 16 14 H 0.10 1.36 8.14 -51.93 -0.42 0.94 16 15 C 0.14 2.80 6.41 -3.60 -0.02 2.78 16 16 N -0.60 -15.24 3.38 -171.92 -0.58 -15.82 16 17 C -0.23 -6.50 10.25 -15.06 -0.15 -6.65 16 18 H 0.08 2.05 7.83 -52.49 -0.41 1.64 16 19 C -0.01 -0.18 5.48 -17.43 -0.10 -0.28 16 20 N -0.91 -27.75 10.16 55.49 0.56 -27.18 16 21 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 23 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.15 3.89 5.21 -3.41 -0.02 3.87 16 26 C 0.12 2.27 3.66 -66.10 -0.24 2.02 16 27 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 28 N -0.36 -5.11 12.07 33.42 0.40 -4.71 16 29 O 0.10 1.24 11.20 17.18 0.19 1.43 16 30 H 0.09 0.51 8.14 -51.92 -0.42 0.08 16 31 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.18 2.45 8.05 -52.49 -0.42 2.03 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.08 0.80 7.84 -51.93 -0.41 0.39 16 38 H 0.07 1.08 7.49 -51.93 -0.39 0.69 16 39 H 0.07 0.66 7.46 -51.92 -0.39 0.27 16 40 H 0.08 0.84 7.96 -51.93 -0.41 0.43 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.02 0.45 6.78 -51.93 -0.35 0.10 16 43 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.11 3.16 5.30 -51.93 -0.28 2.88 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -36.32 375.87 -8.49 -44.81 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -6.84 Total: -0.29 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: -1.63 Total: 7.99 kcal Atomic # 7 Polarization: -58.66 SS G_CDS: -0.10 Total: -58.76 kcal Atomic # 8 Polarization: -16.33 SS G_CDS: -0.56 Total: -16.88 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.32 -8.49 -44.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188307761.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.966 kcal (2) G-P(sol) polarization free energy of solvation -36.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.813 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds