Wall clock time and date at job start Tue Mar 31 2020 19:05:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.40366 * 126.64502 * 2 1 4 4 C 1.35135 * 107.11250 * 180.22260 * 3 2 1 5 5 O 1.33927 * 108.76843 * 359.77582 * 4 3 2 6 6 C 1.34912 * 109.38353 * 0.02562 * 5 4 3 7 7 C 1.46659 * 125.98599 * 179.97438 * 6 5 4 8 8 O 1.21700 * 120.00078 * 180.02562 * 7 6 5 9 9 N 1.34771 * 120.00115 * 0.02562 * 7 6 5 10 10 C 1.47023 * 125.64738 * 359.97438 * 9 7 6 11 11 C 1.54327 * 107.27173 * 181.10351 * 10 9 7 12 12 C 1.55160 * 102.94164 * 22.19065 * 11 10 9 13 13 H 1.09001 * 111.00601 * 82.61051 * 12 11 10 14 14 N 1.46904 * 111.00371 * 206.42492 * 12 11 10 15 15 C 1.46899 * 110.99763 * 173.72953 * 14 12 11 16 16 C 1.46896 * 110.99798 * 297.68522 * 14 12 11 17 17 C 1.50706 * 109.46952 * 170.00087 * 16 14 12 18 18 O 1.21297 * 120.00010 * 359.97438 * 17 16 14 19 19 N 1.34773 * 120.00179 * 179.97438 * 17 16 14 20 20 C 1.37097 * 120.00156 * 180.27492 * 19 17 16 21 21 H 1.07995 * 119.99895 * 359.72496 * 20 19 17 22 22 C 1.38949 * 119.99922 * 179.72999 * 20 19 17 23 23 N 1.31413 * 120.00305 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00015 * 180.02562 * 22 20 19 25 25 H 1.48510 * 109.46793 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47292 * 119.99478 * 24 22 20 27 27 H 1.48503 * 109.47242 * 239.99911 * 24 22 20 28 28 C 1.47431 * 125.64859 * 180.02562 * 9 7 6 29 29 H 1.09003 * 109.47293 * 270.16017 * 1 2 3 30 30 H 1.09004 * 109.47313 * 30.15907 * 1 2 3 31 31 H 1.08996 * 109.47172 * 150.15482 * 1 2 3 32 32 H 1.08000 * 126.44505 * 0.02562 * 3 2 1 33 33 H 1.08006 * 125.61445 * 179.77792 * 4 3 2 34 34 H 1.08997 * 109.88370 * 61.68696 * 10 9 7 35 35 H 1.09004 * 110.00816 * 300.58941 * 10 9 7 36 36 H 1.08997 * 110.71980 * 263.82657 * 11 10 9 37 37 H 1.08993 * 110.72083 * 140.55006 * 11 10 9 38 38 H 1.09005 * 109.46830 * 190.00305 * 15 14 12 39 39 H 1.09002 * 109.47723 * 310.00107 * 15 14 12 40 40 H 1.08996 * 109.47316 * 70.00626 * 15 14 12 41 41 H 1.08995 * 109.47445 * 50.00225 * 16 14 12 42 42 H 1.08998 * 109.46973 * 289.99364 * 16 14 12 43 43 H 0.97002 * 119.99983 * 0.02562 * 19 17 16 44 44 H 0.97002 * 120.00069 * 180.02562 * 23 22 20 45 45 H 1.08998 * 110.36317 * 36.98784 * 28 9 7 46 46 H 1.09000 * 110.36367 * 274.66300 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0050 5 8 3.6005 -0.6647 -0.0031 6 6 2.3220 -1.0955 0.0026 7 6 1.8843 -2.4952 0.0057 8 8 0.6967 -2.7614 0.0104 9 7 2.7971 -3.4867 0.0034 10 6 4.2564 -3.3079 -0.0027 11 6 4.8902 -4.7147 -0.0317 12 6 3.7527 -5.5965 -0.6113 13 1 3.7306 -5.5401 -1.6997 14 7 3.8846 -6.9888 -0.1616 15 6 2.7296 -7.7909 -0.5865 16 6 5.1411 -7.5800 -0.6408 17 6 5.3602 -8.9095 0.0341 18 8 4.5496 -9.3236 0.8358 19 7 6.4568 -9.6385 -0.2531 20 6 6.6533 -10.8506 0.3566 21 1 5.9316 -11.2192 1.0704 22 6 7.7811 -11.6046 0.0563 23 7 8.6591 -11.1562 -0.8125 24 14 8.0485 -13.2565 0.8865 25 1 6.9230 -13.5313 1.8157 26 1 8.1121 -14.3239 -0.1439 27 1 9.3229 -13.2272 1.6483 28 6 2.4976 -4.9303 0.0055 29 1 -0.3634 0.0029 1.0277 30 1 -0.3634 0.8886 -0.5163 31 1 -0.3633 -0.8913 -0.5114 32 1 2.0306 2.1595 0.0004 33 1 4.5046 1.2916 -0.0098 34 1 4.5688 -2.7791 0.8977 35 1 4.5596 -2.7465 -0.8864 36 1 5.1550 -5.0392 0.9746 37 1 5.7622 -4.7314 -0.6854 38 1 2.7624 -8.7635 -0.0955 39 1 1.8089 -7.2761 -0.3119 40 1 2.7606 -7.9284 -1.6673 41 1 5.9698 -6.9122 -0.4055 42 1 5.0862 -7.7249 -1.7197 43 1 7.1053 -9.3072 -0.8939 44 1 9.4463 -11.6828 -1.0225 45 1 1.6193 -5.1364 -0.6061 46 1 2.3427 -5.2840 1.0248 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188851894.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:34 Heat of formation + Delta-G solvation = -36.972753 kcal Electronic energy + Delta-G solvation = -28602.008928 eV Core-core repulsion = 24493.951935 eV Total energy + Delta-G solvation = -4108.056993 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.03117 -40.17158 -38.73896 -37.70484 -35.59010 -34.36526 -33.83153 -31.41470 -31.25524 -30.58862 -29.29430 -27.87947 -27.43474 -25.40394 -24.24124 -23.09470 -22.26686 -21.44204 -20.24610 -19.63546 -19.11860 -17.94617 -17.85357 -16.98913 -16.65072 -16.41789 -15.97732 -15.52174 -15.02538 -14.73960 -14.46591 -14.27182 -14.05248 -13.75610 -13.61332 -13.53340 -13.39053 -13.34882 -13.02531 -12.92684 -12.77330 -12.66418 -12.17569 -12.09162 -11.89742 -11.51925 -11.42069 -11.15108 -11.02202 -10.96144 -10.81370 -10.34727 -10.34220 -10.23151 -10.04474 -9.49920 -9.10753 -8.74710 -8.50335 -7.99917 -7.89300 -6.42683 -3.83316 0.75857 1.99801 2.32443 2.79314 2.91195 3.15713 3.26515 3.33662 3.89321 3.91839 4.11446 4.22223 4.41792 4.43503 4.50727 4.60376 4.90735 5.05757 5.11932 5.13601 5.17180 5.19554 5.26587 5.33758 5.44227 5.47769 5.58806 5.62561 5.69971 5.72122 5.78339 5.82186 5.84380 5.85522 5.94444 5.98872 6.08798 6.13229 6.26728 6.54964 6.56666 7.13858 7.22834 7.32544 7.54833 7.79355 8.05833 8.60960 9.17651 9.53595 10.05419 10.75107 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030915 B = 0.002004 C = 0.001915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.487217 B =13970.547143 C =14615.256385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.088 4.088 3 C -0.226 4.226 4 C -0.006 4.006 5 O -0.159 6.159 6 C -0.080 4.080 7 C 0.616 3.384 8 O -0.520 6.520 9 N -0.608 5.608 10 C 0.105 3.895 11 C -0.127 4.127 12 C 0.068 3.932 13 H 0.056 0.944 14 N -0.507 5.507 15 C 0.019 3.981 16 C 0.046 3.954 17 C 0.445 3.555 18 O -0.577 6.577 19 N -0.565 5.565 20 C -0.297 4.297 21 H 0.104 0.896 22 C 0.021 3.979 23 N -0.902 5.902 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.118 3.882 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.086 0.914 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.060 0.940 40 H 0.018 0.982 41 H 0.090 0.910 42 H 0.048 0.952 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.080 0.920 46 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.975 24.652 -2.373 26.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.245 4.245 4 C -0.076 4.076 5 O -0.054 6.054 6 C -0.131 4.131 7 C 0.405 3.595 8 O -0.398 6.398 9 N -0.341 5.341 10 C -0.018 4.018 11 C -0.165 4.165 12 C -0.042 4.042 13 H 0.074 0.926 14 N -0.231 5.231 15 C -0.129 4.129 16 C -0.086 4.086 17 C 0.230 3.770 18 O -0.461 6.461 19 N -0.201 5.201 20 C -0.427 4.427 21 H 0.122 0.878 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.004 4.004 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.105 0.895 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.112 0.888 37 H 0.103 0.897 38 H 0.118 0.882 39 H 0.079 0.921 40 H 0.036 0.964 41 H 0.108 0.892 42 H 0.066 0.934 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.098 0.902 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -8.775 23.955 -1.375 25.549 hybrid contribution 0.847 -0.249 -0.986 1.323 sum -7.928 23.706 -2.361 25.108 Atomic orbital electron populations 1.20430 0.88191 1.03593 1.02956 1.20647 0.97700 0.90956 0.99821 1.21745 0.92453 1.00127 1.10137 1.24398 0.99976 0.80840 1.02427 1.84159 1.28246 1.22448 1.70573 1.21754 0.81547 0.94487 1.15350 1.16108 0.84782 0.81289 0.77289 1.90859 1.15198 1.82142 1.51650 1.48269 1.07144 1.06651 1.72082 1.22119 0.79012 0.98213 1.02441 1.22777 0.97659 0.92310 1.03756 1.22780 0.94736 0.89534 0.97115 0.92614 1.61631 1.02366 0.99576 1.59511 1.22603 0.91836 1.00680 0.97737 1.21899 0.92615 0.96654 0.97385 1.19698 0.84151 0.86459 0.86697 1.90489 1.45597 1.72298 1.37672 1.41863 1.20258 1.18393 1.39633 1.19744 1.06726 0.94305 1.21898 0.87841 1.25260 0.95650 1.00046 0.97061 1.69619 1.12000 1.39165 1.33573 0.85806 0.78383 0.81260 0.78935 1.19210 1.20804 1.20772 1.22272 0.97628 0.77853 1.02654 0.90751 0.91479 0.89484 0.82708 0.77354 0.90743 0.90975 0.88780 0.89675 0.88212 0.92103 0.96366 0.89212 0.93362 0.77525 0.91949 0.90155 0.89507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.87 9.81 36.01 0.35 -0.51 16 2 C -0.09 -0.90 6.20 -104.44 -0.65 -1.54 16 3 C -0.23 -1.69 10.83 -39.89 -0.43 -2.12 16 4 C -0.01 -0.04 12.08 29.63 0.36 0.31 16 5 O -0.16 -1.51 8.28 5.01 0.04 -1.47 16 6 C -0.08 -0.91 6.95 -36.80 -0.26 -1.17 16 7 C 0.62 8.22 7.82 -12.86 -0.10 8.12 16 8 O -0.52 -8.10 14.99 5.19 0.08 -8.02 16 9 N -0.61 -7.41 3.33 -172.06 -0.57 -7.98 16 10 C 0.11 1.04 5.55 -3.06 -0.02 1.03 16 11 C -0.13 -1.34 5.35 -24.89 -0.13 -1.47 16 12 C 0.07 0.85 2.71 -65.56 -0.18 0.67 16 13 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 14 N -0.51 -8.02 4.40 -233.74 -1.03 -9.05 16 15 C 0.02 0.30 9.09 60.06 0.55 0.85 16 16 C 0.05 0.78 5.33 -4.98 -0.03 0.75 16 17 C 0.44 10.18 7.54 -10.98 -0.08 10.10 16 18 O -0.58 -15.15 13.89 5.54 0.08 -15.07 16 19 N -0.56 -13.99 5.29 -10.96 -0.06 -14.05 16 20 C -0.30 -8.16 9.68 -14.93 -0.14 -8.30 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.24 13.05 55.50 0.72 -23.51 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 C 0.12 1.49 5.32 -2.53 -0.01 1.48 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.94 6.45 -51.93 -0.33 0.61 16 32 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 33 H 0.21 0.50 8.06 -52.48 -0.42 0.08 16 34 H 0.07 0.70 7.79 -51.93 -0.40 0.29 16 35 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 36 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.08 0.77 7.88 -51.93 -0.41 0.37 16 38 H 0.10 1.92 6.01 -51.93 -0.31 1.61 16 39 H 0.06 0.84 6.68 -51.93 -0.35 0.49 16 40 H 0.02 0.27 8.06 -51.93 -0.42 -0.15 16 41 H 0.09 1.35 6.77 -51.93 -0.35 1.00 16 42 H 0.05 0.76 8.06 -51.93 -0.42 0.34 16 43 H 0.39 9.27 7.90 -40.82 -0.32 8.94 16 44 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 45 H 0.08 1.03 7.68 -51.93 -0.40 0.63 16 46 H 0.09 1.19 8.14 -51.93 -0.42 0.76 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -32.85 377.08 -7.53 -40.38 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.59 Total: 8.59 kcal Atomic # 6 Polarization: 9.52 SS G_CDS: -0.87 Total: 8.65 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: -0.93 Total: -54.59 kcal Atomic # 8 Polarization: -24.75 SS G_CDS: 0.20 Total: -24.56 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.85 -7.53 -40.38 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188851894.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.409 kcal (2) G-P(sol) polarization free energy of solvation -32.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds