Wall clock time and date at job start Tue Mar 31 2020 19:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40362 * 126.64086 * 2 1 4 4 C 1.35136 * 107.11382 * 179.73744 * 3 2 1 5 5 O 1.33929 * 108.76488 * 0.22517 * 4 3 2 6 6 C 1.34914 * 109.38545 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.98706 * 180.02562 * 6 5 4 8 8 O 1.21699 * 119.99876 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00492 * 0.02562 * 7 6 5 10 10 C 1.47030 * 125.64358 * 359.68968 * 9 7 6 11 11 C 1.54333 * 107.26274 * 178.84871 * 10 9 7 12 12 C 1.55153 * 103.02129 * 338.14626 * 11 10 9 13 13 H 1.09001 * 111.03331 * 277.21124 * 12 11 10 14 14 N 1.46901 * 111.00045 * 153.38352 * 12 11 10 15 15 C 1.46901 * 111.00152 * 62.39483 * 14 12 11 16 16 C 1.46904 * 110.99689 * 186.34858 * 14 12 11 17 17 C 1.50704 * 109.47027 * 169.99927 * 16 14 12 18 18 O 1.21287 * 120.00078 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99447 * 179.97438 * 17 16 14 20 20 C 1.37102 * 119.99500 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00127 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99797 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00470 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99774 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47301 * 60.00425 * 24 22 20 26 26 H 1.48497 * 109.47050 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46918 * 300.00231 * 24 22 20 28 28 C 1.47418 * 125.65276 * 180.02562 * 9 7 6 29 29 H 1.08991 * 109.46787 * 90.02648 * 1 2 3 30 30 H 1.09003 * 109.46766 * 210.02381 * 1 2 3 31 31 H 1.09002 * 109.46854 * 330.02029 * 1 2 3 32 32 H 1.08002 * 126.44813 * 0.02562 * 3 2 1 33 33 H 1.07992 * 125.62084 * 180.20749 * 4 3 2 34 34 H 1.08994 * 109.88236 * 298.39754 * 10 9 7 35 35 H 1.09002 * 109.87945 * 59.56134 * 10 9 7 36 36 H 1.09007 * 110.84886 * 219.67271 * 11 10 9 37 37 H 1.08997 * 110.66416 * 96.52994 * 11 10 9 38 38 H 1.08994 * 109.47116 * 60.00228 * 15 14 12 39 39 H 1.09006 * 109.46780 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.46866 * 299.99434 * 15 14 12 41 41 H 1.09009 * 109.46886 * 289.99446 * 16 14 12 42 42 H 1.08999 * 109.47194 * 49.99257 * 16 14 12 43 43 H 0.96993 * 120.00436 * 359.97438 * 19 17 16 44 44 H 0.96994 * 120.00305 * 179.97438 * 23 22 20 45 45 H 1.09001 * 110.36559 * 322.93140 * 28 9 7 46 46 H 1.09004 * 110.36543 * 85.14425 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6746 0.0059 5 8 3.6006 -0.6646 0.0045 6 6 2.3221 -1.0955 -0.0028 7 6 1.8844 -2.4952 -0.0060 8 8 0.6970 -2.7614 -0.0133 9 7 2.7973 -3.4868 -0.0010 10 6 4.2566 -3.3079 0.0014 11 6 4.8904 -4.7147 0.0369 12 6 3.7522 -5.5964 0.6151 13 1 3.7281 -5.5400 1.7034 14 7 3.8848 -6.9887 0.1657 15 6 5.1399 -7.5804 0.6482 16 6 2.7284 -7.7904 0.5876 17 6 2.7750 -9.1351 -0.0911 18 8 3.6819 -9.3995 -0.8517 19 7 1.8087 -10.0440 0.1473 20 6 1.8508 -11.2672 -0.4705 21 1 2.6584 -11.5026 -1.1478 22 6 0.8549 -12.2044 -0.2244 23 7 -0.1275 -11.9182 0.6001 24 14 0.9127 -13.8713 -1.0657 25 1 2.1662 -14.5727 -0.6892 26 1 -0.2560 -14.6819 -0.6387 27 1 0.8732 -13.6841 -2.5383 28 6 2.4979 -4.9303 -0.0039 29 1 -0.3632 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0306 2.1596 0.0004 33 1 4.5046 1.2917 0.0107 34 1 4.5671 -2.7819 -0.9013 35 1 4.5596 -2.7445 0.8840 36 1 5.7617 -4.7312 0.6917 37 1 5.1586 -5.0411 -0.9678 38 1 5.1549 -7.5620 1.7379 39 1 5.2127 -8.6110 0.3008 40 1 5.9833 -7.0072 0.2634 41 1 2.7565 -7.9278 1.6687 42 1 1.8086 -7.2752 0.3107 43 1 1.0836 -9.8327 0.7559 44 1 -0.8228 -12.5724 0.7717 45 1 1.6186 -5.1366 0.6064 46 1 2.3427 -5.2834 -1.0234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188851896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:39 Heat of formation + Delta-G solvation = -36.444566 kcal Electronic energy + Delta-G solvation = -28723.429279 eV Core-core repulsion = 24615.395190 eV Total energy + Delta-G solvation = -4108.034089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.01572 -40.14839 -38.71368 -37.68965 -35.57448 -34.34384 -33.80980 -31.42793 -31.20958 -30.57739 -29.13757 -27.88372 -27.67609 -24.98731 -24.44192 -23.12283 -22.29020 -21.37135 -20.27993 -19.60562 -19.08969 -17.95336 -17.78207 -16.98069 -16.62627 -16.42114 -15.88533 -15.51717 -14.99833 -14.65197 -14.61452 -14.26361 -14.06178 -13.75536 -13.65532 -13.40317 -13.34963 -13.31989 -13.01535 -12.99838 -12.77114 -12.57447 -12.11472 -12.05898 -11.79607 -11.51722 -11.37771 -11.25930 -11.05310 -10.94688 -10.77804 -10.42706 -10.30000 -10.19719 -10.02663 -9.45370 -9.07963 -8.72024 -8.47544 -7.98539 -7.89190 -6.39752 -3.80756 0.78026 2.01458 2.34255 2.81371 2.94675 3.21378 3.27229 3.31347 3.90093 3.93957 4.12402 4.23791 4.41888 4.45515 4.51016 4.62173 4.88706 5.06614 5.14162 5.15649 5.19071 5.21606 5.28288 5.34882 5.47409 5.49138 5.58499 5.65808 5.69540 5.72678 5.77734 5.85466 5.87284 5.89169 5.91855 6.02798 6.07318 6.16022 6.28991 6.51869 6.57600 7.16508 7.23153 7.33573 7.56723 7.83338 8.07577 8.63260 9.19555 9.55989 10.07555 10.77858 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.002214 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.003124 B =12643.615889 C =13701.001852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.088 4.088 3 C -0.225 4.225 4 C -0.008 4.008 5 O -0.160 6.160 6 C -0.079 4.079 7 C 0.615 3.385 8 O -0.516 6.516 9 N -0.609 5.609 10 C 0.106 3.894 11 C -0.122 4.122 12 C 0.069 3.931 13 H 0.056 0.944 14 N -0.506 5.506 15 C 0.023 3.977 16 C 0.041 3.959 17 C 0.445 3.555 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.113 3.887 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.155 0.845 33 H 0.209 0.791 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.015 0.985 39 H 0.098 0.902 40 H 0.062 0.938 41 H 0.049 0.951 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.082 0.918 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.498 25.892 2.786 27.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.244 4.244 4 C -0.078 4.078 5 O -0.055 6.055 6 C -0.130 4.130 7 C 0.404 3.596 8 O -0.394 6.394 9 N -0.342 5.342 10 C -0.018 4.018 11 C -0.160 4.160 12 C -0.041 4.041 13 H 0.074 0.926 14 N -0.231 5.231 15 C -0.124 4.124 16 C -0.090 4.090 17 C 0.230 3.770 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.009 4.009 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.085 0.915 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.092 0.908 35 H 0.089 0.911 36 H 0.101 0.899 37 H 0.111 0.889 38 H 0.033 0.967 39 H 0.117 0.883 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 7.509 25.265 1.820 26.420 hybrid contribution -0.462 -0.344 0.919 1.085 sum 7.048 24.920 2.739 26.042 Atomic orbital electron populations 1.20439 0.88139 1.03631 1.03020 1.20658 0.97742 0.90942 0.99758 1.21745 0.92456 1.00129 1.10047 1.24375 0.99946 0.80856 1.02651 1.84150 1.28297 1.22429 1.70647 1.21769 0.81497 0.94502 1.15266 1.16119 0.84823 0.81274 0.77376 1.90879 1.15159 1.82063 1.51326 1.48255 1.07038 1.06658 1.72253 1.22111 0.79201 0.98120 1.02319 1.22708 0.97491 0.92301 1.03515 1.22785 0.94725 0.89474 0.97097 0.92597 1.61620 1.02581 0.99285 1.59581 1.22537 0.90434 1.03109 0.96339 1.21941 0.94280 0.94872 0.97910 1.19664 0.85075 0.85657 0.86614 1.90480 1.36415 1.79539 1.39788 1.41862 1.23230 1.13455 1.41434 1.19640 1.09688 0.89728 1.23820 0.87947 1.25265 0.95406 1.00113 0.97164 1.69602 1.12536 1.36548 1.35568 0.85920 0.77602 0.81181 0.79520 1.19942 1.21006 1.19882 1.22344 0.97834 0.77858 1.02850 0.90708 0.89423 0.91470 0.82716 0.77404 0.90794 0.91068 0.89935 0.88935 0.96664 0.88316 0.91945 0.93283 0.89261 0.77466 0.91807 0.89954 0.89427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.92 9.81 36.01 0.35 -0.57 16 2 C -0.09 -0.92 6.20 -104.43 -0.65 -1.57 16 3 C -0.22 -1.72 10.83 -39.89 -0.43 -2.15 16 4 C -0.01 -0.06 12.08 29.63 0.36 0.30 16 5 O -0.16 -1.52 8.28 5.00 0.04 -1.48 16 6 C -0.08 -0.92 6.95 -36.80 -0.26 -1.18 16 7 C 0.62 8.52 7.82 -12.86 -0.10 8.42 16 8 O -0.52 -8.48 15.00 5.19 0.08 -8.40 16 9 N -0.61 -7.63 3.33 -172.05 -0.57 -8.20 16 10 C 0.11 1.03 5.55 -3.05 -0.02 1.01 16 11 C -0.12 -1.22 5.39 -24.89 -0.13 -1.35 16 12 C 0.07 0.86 2.71 -65.56 -0.18 0.68 16 13 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 14 N -0.51 -8.05 4.40 -233.73 -1.03 -9.08 16 15 C 0.02 0.36 9.01 60.07 0.54 0.90 16 16 C 0.04 0.73 5.32 -4.97 -0.03 0.70 16 17 C 0.44 10.38 7.47 -10.98 -0.08 10.29 16 18 O -0.58 -15.26 13.91 5.55 0.08 -15.18 16 19 N -0.56 -14.27 5.29 -10.96 -0.06 -14.33 16 20 C -0.30 -8.33 9.68 -14.93 -0.14 -8.47 16 21 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.67 13.05 55.50 0.72 -23.95 16 24 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 28 C 0.11 1.52 5.32 -2.52 -0.01 1.50 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 1.01 6.46 -51.93 -0.34 0.68 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.16 0.80 8.06 -52.49 -0.42 0.37 16 33 H 0.21 0.47 8.06 -52.49 -0.42 0.05 16 34 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 35 H 0.07 0.62 7.67 -51.93 -0.40 0.22 16 36 H 0.08 0.68 8.09 -51.93 -0.42 0.26 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 39 H 0.10 1.87 5.83 -51.93 -0.30 1.57 16 40 H 0.06 0.80 7.20 -51.93 -0.37 0.43 16 41 H 0.05 0.80 8.12 -51.92 -0.42 0.38 16 42 H 0.09 1.47 6.68 -51.93 -0.35 1.12 16 43 H 0.39 9.56 7.90 -40.82 -0.32 9.24 16 44 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 45 H 0.08 1.14 7.68 -51.93 -0.40 0.74 16 46 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 LS Contribution 377.60 15.07 5.69 5.69 Total: -1.00 -33.21 377.60 -7.56 -40.78 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -6.62 Total: 9.02 kcal Atomic # 6 Polarization: 9.89 SS G_CDS: -0.87 Total: 9.02 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: -0.93 Total: -55.56 kcal Atomic # 8 Polarization: -25.26 SS G_CDS: 0.20 Total: -25.06 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.21 -7.56 -40.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188851896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.333 kcal (2) G-P(sol) polarization free energy of solvation -33.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds