Wall clock time and date at job start Tue Mar 31 2020 19:05:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.40362 * 126.64086 * 2 1 4 4 C 1.35136 * 107.11382 * 179.73744 * 3 2 1 5 5 O 1.33929 * 108.76488 * 0.22517 * 4 3 2 6 6 C 1.34914 * 109.38545 * 0.02562 * 5 4 3 7 7 C 1.46658 * 125.98706 * 180.02562 * 6 5 4 8 8 O 1.21699 * 119.99876 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00492 * 0.02562 * 7 6 5 10 10 C 1.47030 * 125.64358 * 359.68968 * 9 7 6 11 11 C 1.54333 * 107.26274 * 178.84871 * 10 9 7 12 12 C 1.55153 * 103.02129 * 338.14626 * 11 10 9 13 13 H 1.09001 * 111.03331 * 277.21124 * 12 11 10 14 14 N 1.46901 * 111.00045 * 153.38352 * 12 11 10 15 15 C 1.46901 * 111.00152 * 62.39483 * 14 12 11 16 16 C 1.46904 * 110.99689 * 186.34858 * 14 12 11 17 17 C 1.50704 * 109.47027 * 169.99927 * 16 14 12 18 18 O 1.21287 * 120.00078 * 359.97438 * 17 16 14 19 19 N 1.34778 * 119.99447 * 179.97438 * 17 16 14 20 20 C 1.37102 * 119.99500 * 179.97438 * 19 17 16 21 21 H 1.08000 * 120.00127 * 0.02562 * 20 19 17 22 22 C 1.38945 * 119.99797 * 179.97438 * 20 19 17 23 23 N 1.31411 * 120.00470 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99774 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47301 * 60.00425 * 24 22 20 26 26 H 1.48497 * 109.47050 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46918 * 300.00231 * 24 22 20 28 28 C 1.47418 * 125.65276 * 180.02562 * 9 7 6 29 29 H 1.08991 * 109.46787 * 90.02648 * 1 2 3 30 30 H 1.09003 * 109.46766 * 210.02381 * 1 2 3 31 31 H 1.09002 * 109.46854 * 330.02029 * 1 2 3 32 32 H 1.08002 * 126.44813 * 0.02562 * 3 2 1 33 33 H 1.07992 * 125.62084 * 180.20749 * 4 3 2 34 34 H 1.08994 * 109.88236 * 298.39754 * 10 9 7 35 35 H 1.09002 * 109.87945 * 59.56134 * 10 9 7 36 36 H 1.09007 * 110.84886 * 219.67271 * 11 10 9 37 37 H 1.08997 * 110.66416 * 96.52994 * 11 10 9 38 38 H 1.08994 * 109.47116 * 60.00228 * 15 14 12 39 39 H 1.09006 * 109.46780 * 180.02562 * 15 14 12 40 40 H 1.08994 * 109.46866 * 299.99434 * 15 14 12 41 41 H 1.09009 * 109.46886 * 289.99446 * 16 14 12 42 42 H 1.08999 * 109.47194 * 49.99257 * 16 14 12 43 43 H 0.96993 * 120.00436 * 359.97438 * 19 17 16 44 44 H 0.96994 * 120.00305 * 179.97438 * 23 22 20 45 45 H 1.09001 * 110.36559 * 322.93140 * 28 9 7 46 46 H 1.09004 * 110.36543 * 85.14425 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3448 1.1263 0.0000 4 6 3.6184 0.6746 0.0059 5 8 3.6006 -0.6646 0.0045 6 6 2.3221 -1.0955 -0.0028 7 6 1.8844 -2.4952 -0.0060 8 8 0.6970 -2.7614 -0.0133 9 7 2.7973 -3.4868 -0.0010 10 6 4.2566 -3.3079 0.0014 11 6 4.8904 -4.7147 0.0369 12 6 3.7522 -5.5964 0.6151 13 1 3.7281 -5.5400 1.7034 14 7 3.8848 -6.9887 0.1657 15 6 5.1399 -7.5804 0.6482 16 6 2.7284 -7.7904 0.5876 17 6 2.7750 -9.1351 -0.0911 18 8 3.6819 -9.3995 -0.8517 19 7 1.8087 -10.0440 0.1473 20 6 1.8508 -11.2672 -0.4705 21 1 2.6584 -11.5026 -1.1478 22 6 0.8549 -12.2044 -0.2244 23 7 -0.1275 -11.9182 0.6001 24 14 0.9127 -13.8713 -1.0657 25 1 2.1662 -14.5727 -0.6892 26 1 -0.2560 -14.6819 -0.6387 27 1 0.8732 -13.6841 -2.5383 28 6 2.4979 -4.9303 -0.0039 29 1 -0.3632 -0.0005 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 2.0306 2.1596 0.0004 33 1 4.5046 1.2917 0.0107 34 1 4.5671 -2.7819 -0.9013 35 1 4.5596 -2.7445 0.8840 36 1 5.7617 -4.7312 0.6917 37 1 5.1586 -5.0411 -0.9678 38 1 5.1549 -7.5620 1.7379 39 1 5.2127 -8.6110 0.3008 40 1 5.9833 -7.0072 0.2634 41 1 2.7565 -7.9278 1.6687 42 1 1.8086 -7.2752 0.3107 43 1 1.0836 -9.8327 0.7559 44 1 -0.8228 -12.5724 0.7717 45 1 1.6186 -5.1366 0.6064 46 1 2.3427 -5.2834 -1.0234 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188851896.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:38 Heat of formation + Delta-G solvation = -60.556214 kcal Electronic energy + Delta-G solvation = -28724.474838 eV Core-core repulsion = 24615.395190 eV Total energy + Delta-G solvation = -4109.079649 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.68194 -41.18516 -40.27633 -39.01339 -36.85343 -35.80032 -35.04536 -33.28288 -32.35622 -31.34288 -30.08831 -29.33102 -28.51708 -26.73657 -25.57845 -24.29476 -23.02523 -22.11219 -21.44935 -20.87044 -20.37230 -19.83893 -18.79669 -18.01526 -17.59387 -17.39190 -17.17742 -16.56545 -16.43308 -16.19070 -16.02778 -15.59252 -15.38466 -15.08122 -14.69461 -14.66934 -14.22336 -14.09856 -14.02452 -13.90727 -13.79148 -13.59405 -13.50540 -13.39607 -13.08460 -12.81158 -12.77747 -12.59280 -12.44086 -12.35661 -12.13209 -11.93969 -11.86871 -11.44432 -11.31009 -10.67189 -10.28391 -10.00026 -9.97225 -9.51133 -9.27151 -8.45598 -5.94484 0.00647 1.39872 1.41231 1.41458 1.51715 1.53008 2.01472 2.02155 2.05770 2.28879 2.74787 3.20565 3.24523 3.42123 3.60620 3.69589 3.80667 3.94292 4.01556 4.14918 4.24175 4.28526 4.37341 4.47953 4.52377 4.56919 4.58020 4.62405 4.72086 4.72785 4.73540 4.76379 4.83568 4.95142 5.07413 5.11409 5.15753 5.20521 5.26472 5.41533 5.46725 5.83299 5.90431 6.03975 6.16674 6.30059 6.60830 6.85106 7.13334 7.56845 8.12180 8.71687 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.002214 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.003124 B =12643.615889 C =13701.001852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.095 4.095 3 C -0.236 4.236 4 C 0.016 3.984 5 O -0.164 6.164 6 C -0.114 4.114 7 C 0.608 3.392 8 O -0.559 6.559 9 N -0.610 5.610 10 C 0.109 3.891 11 C -0.112 4.112 12 C 0.075 3.925 13 H 0.070 0.930 14 N -0.523 5.523 15 C 0.028 3.972 16 C 0.054 3.946 17 C 0.444 3.556 18 O -0.610 6.610 19 N -0.576 5.576 20 C -0.331 4.331 21 H 0.081 0.919 22 C -0.016 4.016 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.270 1.270 26 H -0.272 1.272 27 H -0.272 1.272 28 C 0.114 3.886 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.090 0.910 32 H 0.182 0.818 33 H 0.258 0.742 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.111 0.889 37 H 0.084 0.916 38 H 0.032 0.968 39 H 0.057 0.943 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.100 0.900 43 H 0.395 0.605 44 H 0.277 0.723 45 H 0.070 0.930 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.258 28.328 3.424 29.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.098 4.098 3 C -0.255 4.255 4 C -0.053 4.053 5 O -0.059 6.059 6 C -0.165 4.165 7 C 0.398 3.602 8 O -0.440 6.440 9 N -0.342 5.342 10 C -0.013 4.013 11 C -0.150 4.150 12 C -0.034 4.034 13 H 0.088 0.912 14 N -0.248 5.248 15 C -0.119 4.119 16 C -0.077 4.077 17 C 0.231 3.769 18 O -0.496 6.496 19 N -0.213 5.213 20 C -0.461 4.461 21 H 0.099 0.901 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.817 3.183 25 H -0.195 1.195 26 H -0.196 1.196 27 H -0.198 1.198 28 C -0.009 4.009 29 H 0.093 0.907 30 H 0.080 0.920 31 H 0.109 0.891 32 H 0.199 0.801 33 H 0.273 0.727 34 H 0.101 0.899 35 H 0.107 0.893 36 H 0.129 0.871 37 H 0.103 0.897 38 H 0.051 0.949 39 H 0.076 0.924 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.118 0.882 43 H 0.228 0.772 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 9.296 27.720 2.471 29.342 hybrid contribution -0.944 -0.938 0.705 1.506 sum 8.352 26.783 3.176 28.234 Atomic orbital electron populations 1.20424 0.88331 1.03504 1.02949 1.21013 0.98124 0.91950 0.98733 1.22081 0.92352 1.00566 1.10469 1.25386 1.01338 0.79809 0.98776 1.84130 1.27016 1.23977 1.70822 1.21370 0.82799 0.93539 1.18803 1.16495 0.84509 0.82430 0.76730 1.90841 1.16806 1.82990 1.53388 1.48333 1.08272 1.05899 1.71743 1.22251 0.77266 0.98214 1.03593 1.22713 0.97379 0.91423 1.03505 1.22787 0.95377 0.87493 0.97791 0.91211 1.61550 1.02041 1.00628 1.60550 1.22434 0.90975 1.01102 0.97387 1.21771 0.95879 0.91871 0.98219 1.20647 0.83577 0.87026 0.85642 1.90457 1.37425 1.80628 1.41120 1.41952 1.24013 1.13468 1.41888 1.19630 1.10039 0.91497 1.24896 0.90096 1.26066 0.94679 1.03247 0.97511 1.69674 1.12840 1.37711 1.36111 0.84979 0.78028 0.76921 0.78355 1.19493 1.19639 1.19770 1.22206 0.98193 0.79006 1.01537 0.90748 0.91977 0.89088 0.80081 0.72657 0.89908 0.89319 0.87093 0.89738 0.94923 0.92444 0.89282 0.91332 0.88233 0.77182 0.91359 0.91112 0.91454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.85 9.81 71.24 0.70 -1.15 16 2 C -0.10 -1.90 6.20 -19.74 -0.12 -2.02 16 3 C -0.24 -2.87 10.83 22.07 0.24 -2.63 16 4 C 0.02 0.15 12.08 67.10 0.81 0.96 16 5 O -0.16 -2.68 8.28 -5.02 -0.04 -2.72 16 6 C -0.11 -2.59 6.95 24.07 0.17 -2.42 16 7 C 0.61 17.24 7.82 86.44 0.68 17.92 16 8 O -0.56 -19.52 15.00 -4.35 -0.07 -19.58 16 9 N -0.61 -15.16 3.33 -816.45 -2.72 -17.87 16 10 C 0.11 1.88 5.55 86.73 0.48 2.36 16 11 C -0.11 -1.95 5.39 31.78 0.17 -1.78 16 12 C 0.07 1.76 2.71 46.31 0.13 1.88 16 13 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 14 N -0.52 -16.29 4.40 -893.39 -3.93 -20.22 16 15 C 0.03 0.84 9.01 127.69 1.15 1.99 16 16 C 0.05 1.91 5.32 85.56 0.46 2.36 16 17 C 0.44 21.33 7.47 87.66 0.66 21.98 16 18 O -0.61 -33.39 13.91 -3.05 -0.04 -33.43 16 19 N -0.58 -30.14 5.29 -306.98 -1.62 -31.76 16 20 C -0.33 -19.02 9.68 84.04 0.81 -18.21 16 21 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.89 13.05 21.66 0.28 -50.61 16 24 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 C 0.11 3.08 5.32 86.86 0.46 3.54 16 29 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 30 H 0.06 1.53 6.46 -2.39 -0.02 1.51 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.18 1.14 8.06 -2.91 -0.02 1.11 16 33 H 0.26 -0.38 8.06 -2.91 -0.02 -0.40 16 34 H 0.08 1.31 7.80 -2.39 -0.02 1.29 16 35 H 0.09 1.26 7.67 -2.39 -0.02 1.24 16 36 H 0.11 1.35 8.09 -2.38 -0.02 1.33 16 37 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 38 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 39 H 0.06 2.20 5.83 -2.38 -0.01 2.18 16 40 H 0.09 2.09 7.20 -2.39 -0.02 2.08 16 41 H 0.07 2.18 8.12 -2.38 -0.02 2.16 16 42 H 0.10 3.33 6.68 -2.39 -0.02 3.32 16 43 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 44 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 45 H 0.07 2.05 7.68 -2.39 -0.02 2.03 16 46 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 Total: -1.00 -76.12 377.60 1.42 -74.69 By element: Atomic # 1 Polarization: 31.20 SS G_CDS: 0.28 Total: 31.47 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: 7.25 Total: 24.41 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -7.98 Total: -120.46 kcal Atomic # 8 Polarization: -55.59 SS G_CDS: -0.15 Total: -55.74 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -76.12 1.42 -74.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188851896.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.138 kcal (2) G-P(sol) polarization free energy of solvation -76.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds