Wall clock time and date at job start Tue Mar 31 2020 19:05:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35125 * 126.44708 * 2 1 4 4 O 1.33925 * 108.77343 * 179.75397 * 3 2 1 5 5 C 1.34915 * 109.37956 * 0.40655 * 4 3 2 6 6 C 1.46658 * 125.98570 * 179.85648 * 5 4 3 7 7 O 1.21697 * 120.00094 * 179.68606 * 6 5 4 8 8 N 1.34777 * 120.00125 * 359.69454 * 6 5 4 9 9 C 1.47020 * 125.64620 * 0.03722 * 8 6 5 10 10 C 1.54329 * 107.26854 * 178.90564 * 9 8 6 11 11 C 1.55155 * 102.94491 * 337.80770 * 10 9 8 12 12 H 1.09003 * 111.03608 * 277.41752 * 11 10 9 13 13 N 1.46901 * 111.00508 * 153.57562 * 11 10 9 14 14 C 1.46891 * 110.99746 * 62.39734 * 13 11 10 15 15 C 1.46902 * 110.99644 * 186.35077 * 13 11 10 16 16 C 1.50706 * 109.46577 * 169.99988 * 15 13 11 17 17 O 1.21292 * 120.00254 * 359.97438 * 16 15 13 18 18 N 1.34777 * 119.99762 * 179.97438 * 16 15 13 19 19 C 1.37095 * 119.99962 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99996 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00021 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99938 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47196 * 300.00436 * 23 21 19 27 27 C 1.47426 * 125.64994 * 179.97438 * 8 6 5 28 28 C 1.36546 * 108.02651 * 359.59885 * 5 4 3 29 29 H 1.09004 * 109.47067 * 269.99742 * 1 2 3 30 30 H 1.08999 * 109.47437 * 29.99433 * 1 2 3 31 31 H 1.08999 * 109.47163 * 150.00279 * 1 2 3 32 32 H 1.08004 * 125.60918 * 0.04001 * 3 2 1 33 33 H 1.08999 * 109.88026 * 298.31896 * 9 8 6 34 34 H 1.09000 * 109.88357 * 59.33798 * 9 8 6 35 35 H 1.08995 * 110.71972 * 219.44298 * 10 9 8 36 36 H 1.09000 * 110.71906 * 96.17371 * 10 9 8 37 37 H 1.09003 * 109.47237 * 183.95504 * 14 13 11 38 38 H 1.08998 * 109.47394 * 303.94903 * 14 13 11 39 39 H 1.09003 * 109.47554 * 63.95496 * 14 13 11 40 40 H 1.09000 * 109.46894 * 50.00222 * 15 13 11 41 41 H 1.09000 * 109.47263 * 289.99788 * 15 13 11 42 42 H 0.96999 * 120.00047 * 0.02562 * 18 16 15 43 43 H 0.96991 * 120.00225 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.36800 * 85.32134 * 27 8 6 45 45 H 1.09005 * 110.45655 * 323.04406 * 27 8 6 46 46 H 1.08004 * 126.64223 * 180.26564 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0054 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4942 0.0003 7 8 4.7470 -2.7078 0.0008 8 7 6.0520 -0.9093 0.0003 9 6 6.3055 0.5389 0.0007 10 6 7.8358 0.7362 0.0286 11 6 8.3487 -0.6063 0.6135 12 1 8.2883 -0.6075 1.7018 13 7 9.7190 -0.8869 0.1646 14 6 10.6505 0.1441 0.6412 15 6 10.1498 -2.2244 0.5931 16 6 11.4495 -2.5745 -0.0847 17 8 11.9658 -1.7876 -0.8498 18 7 12.0381 -3.7622 0.1593 19 6 13.2202 -4.0810 -0.4577 20 1 13.6799 -3.3803 -1.1389 21 6 13.8268 -5.3057 -0.2065 22 7 13.2671 -6.1584 0.6220 23 14 15.4377 -5.7398 -1.0466 24 1 16.4740 -4.7432 -0.6749 25 1 15.8736 -7.0915 -0.6130 26 1 15.2466 -5.7294 -2.5191 27 6 7.3460 -1.6157 0.0012 28 6 2.3407 -1.1292 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9770 2.1145 0.0006 33 1 5.8902 0.9881 -0.9014 34 1 5.8546 0.9939 0.8827 35 1 8.1056 1.5682 0.6790 36 1 8.2231 0.8912 -0.9784 37 1 11.6442 -0.0491 0.2369 38 1 10.3080 1.1244 0.3100 39 1 10.6908 0.1221 1.7302 40 1 9.3891 -2.9558 0.3203 41 1 10.2902 -2.2319 1.6740 42 1 11.6251 -4.3917 0.7709 43 1 13.6903 -7.0134 0.7971 44 1 7.6394 -1.8713 -1.0170 45 1 7.2892 -2.5141 0.6158 46 1 2.0266 -2.1626 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191849050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:47 Heat of formation + Delta-G solvation = -37.455261 kcal Electronic energy + Delta-G solvation = -28450.859857 eV Core-core repulsion = 24342.781941 eV Total energy + Delta-G solvation = -4108.077916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.04001 -40.17384 -38.71015 -37.67409 -35.55801 -34.55200 -33.81148 -31.45030 -31.21773 -30.63646 -29.16014 -27.85381 -27.57161 -25.08431 -24.67027 -23.14336 -22.27852 -21.36028 -20.30976 -19.58350 -19.07223 -17.87554 -17.71957 -16.99638 -16.85684 -16.48393 -15.88858 -15.53528 -15.02892 -14.64526 -14.60875 -14.27224 -13.99678 -13.80607 -13.69343 -13.57314 -13.43628 -13.36857 -13.11202 -12.99981 -12.89116 -12.62236 -12.14176 -12.07987 -11.80036 -11.51449 -11.38570 -11.26644 -11.05891 -10.95621 -10.78180 -10.46839 -10.42616 -10.19604 -10.06269 -9.45378 -9.06624 -8.77588 -8.48358 -7.98442 -7.88700 -6.39673 -3.80620 0.76613 1.95131 2.31116 2.78145 2.93894 3.21433 3.27300 3.31416 3.89964 3.93404 4.07707 4.23640 4.39625 4.43386 4.49679 4.57909 4.87797 4.91747 5.06243 5.13870 5.17994 5.19936 5.25877 5.28119 5.36880 5.44028 5.55854 5.57889 5.59708 5.65504 5.70156 5.76831 5.86000 5.88097 5.90321 6.01988 6.04669 6.07587 6.28886 6.52442 6.54446 7.14546 7.21417 7.33028 7.56811 7.79484 8.07651 8.63378 9.19663 9.56081 10.07701 10.77929 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002061 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.012117 B =13579.639533 C =14458.975996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.014 4.014 4 O -0.158 6.158 5 C -0.067 4.067 6 C 0.614 3.386 7 O -0.518 6.518 8 N -0.608 5.608 9 C 0.105 3.895 10 C -0.122 4.122 11 C 0.068 3.932 12 H 0.056 0.944 13 N -0.506 5.506 14 C 0.023 3.977 15 C 0.041 3.959 16 C 0.445 3.555 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.273 1.273 27 C 0.113 3.887 28 C -0.119 4.119 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.208 0.792 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.061 0.939 39 H 0.015 0.985 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.213 15.765 2.706 28.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.195 4.195 3 C -0.084 4.084 4 O -0.053 6.053 5 C -0.119 4.119 6 C 0.403 3.597 7 O -0.396 6.396 8 N -0.341 5.341 9 C -0.018 4.018 10 C -0.160 4.160 11 C -0.041 4.041 12 H 0.074 0.926 13 N -0.231 5.231 14 C -0.125 4.125 15 C -0.090 4.090 16 C 0.230 3.770 17 O -0.462 6.462 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.758 3.242 24 H -0.200 1.200 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.010 4.010 28 C -0.140 4.140 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.225 0.775 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.111 0.889 37 H 0.118 0.882 38 H 0.080 0.920 39 H 0.034 0.966 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.106 0.894 45 H 0.101 0.899 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -22.613 15.594 1.739 27.524 hybrid contribution 0.300 -0.706 0.948 1.219 sum -22.314 14.888 2.687 26.959 Atomic orbital electron populations 1.20186 0.88603 1.02910 1.02361 1.20492 0.97738 0.92389 1.08872 1.24218 0.80153 1.00041 1.03953 1.84150 1.29035 1.21673 1.70475 1.21962 0.95852 0.80547 1.13586 1.16147 0.80164 0.86005 0.77422 1.90917 1.85382 1.12040 1.51244 1.48255 1.05373 1.08398 1.72068 1.22126 0.96816 0.80482 1.02392 1.22714 0.92609 0.97147 1.03520 1.22783 0.89406 0.94812 0.97130 0.92587 1.61625 0.99832 1.02018 1.59576 1.22549 0.99213 0.94019 0.96690 1.21949 0.98072 0.91109 0.97873 1.19663 0.86886 0.83842 0.86624 1.90478 1.66155 1.50020 1.39581 1.41857 1.21757 1.15094 1.41253 1.19643 0.98141 1.01456 1.23665 0.87942 1.25267 0.99829 0.95697 0.97152 1.69602 1.40192 1.09064 1.35373 0.85916 0.81357 0.77424 0.79502 1.19950 1.21006 1.19889 1.22351 0.80344 0.95319 1.02946 1.21852 0.90462 1.00662 1.01020 0.91240 0.91435 0.91225 0.77496 0.90758 0.91003 0.89899 0.88871 0.88241 0.91992 0.96611 0.89263 0.93268 0.77470 0.91811 0.89366 0.89913 0.82250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.39 36.00 0.37 -0.05 16 2 C -0.19 -1.51 6.14 -104.93 -0.64 -2.15 16 3 C -0.01 -0.09 12.00 29.62 0.36 0.26 16 4 O -0.16 -1.48 8.27 5.01 0.04 -1.44 16 5 C -0.07 -0.78 6.95 -36.80 -0.26 -1.03 16 6 C 0.61 8.55 7.82 -12.86 -0.10 8.45 16 7 O -0.52 -8.84 17.12 5.19 0.09 -8.75 16 8 N -0.61 -7.61 3.33 -172.07 -0.57 -8.18 16 9 C 0.10 1.01 5.55 -3.06 -0.02 0.99 16 10 C -0.12 -1.20 5.37 -24.89 -0.13 -1.34 16 11 C 0.07 0.85 2.71 -65.57 -0.18 0.68 16 12 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 13 N -0.51 -8.04 4.40 -233.76 -1.03 -9.07 16 14 C 0.02 0.35 9.04 60.06 0.54 0.89 16 15 C 0.04 0.73 5.32 -4.97 -0.03 0.70 16 16 C 0.44 10.38 7.51 -10.98 -0.08 10.30 16 17 O -0.58 -15.26 13.89 5.55 0.08 -15.19 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.33 16 19 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 20 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.68 13.05 55.50 0.72 -23.96 16 23 Si 0.93 21.16 29.55 -169.99 -5.02 16.13 16 24 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 27 C 0.11 1.51 5.32 -2.54 -0.01 1.50 16 28 C -0.12 -1.23 10.57 -39.39 -0.42 -1.64 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.21 0.56 8.06 -52.48 -0.42 0.14 16 33 H 0.07 0.66 7.80 -51.93 -0.40 0.26 16 34 H 0.07 0.61 7.66 -51.93 -0.40 0.22 16 35 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.88 5.88 -51.93 -0.31 1.57 16 38 H 0.06 0.78 7.02 -51.93 -0.36 0.42 16 39 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 40 H 0.09 1.47 6.67 -51.93 -0.35 1.13 16 41 H 0.05 0.80 8.12 -51.93 -0.42 0.38 16 42 H 0.39 9.58 7.90 -40.82 -0.32 9.25 16 43 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 45 H 0.08 1.16 7.68 -51.93 -0.40 0.76 16 46 H 0.16 1.56 8.06 -52.48 -0.42 1.14 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -33.45 381.40 -7.53 -40.99 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -6.69 Total: 8.48 kcal Atomic # 6 Polarization: 10.41 SS G_CDS: -0.84 Total: 9.57 kcal Atomic # 7 Polarization: -54.61 SS G_CDS: -0.93 Total: -55.54 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.21 Total: -25.38 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.45 -7.53 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191849050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.531 kcal (2) G-P(sol) polarization free energy of solvation -33.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds