Wall clock time and date at job start Tue Mar 31 2020 19:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35125 * 126.44708 * 2 1 4 4 O 1.33925 * 108.77343 * 179.75397 * 3 2 1 5 5 C 1.34915 * 109.37956 * 0.40655 * 4 3 2 6 6 C 1.46658 * 125.98570 * 179.85648 * 5 4 3 7 7 O 1.21697 * 120.00094 * 179.68606 * 6 5 4 8 8 N 1.34777 * 120.00125 * 359.69454 * 6 5 4 9 9 C 1.47020 * 125.64620 * 0.03722 * 8 6 5 10 10 C 1.54329 * 107.26854 * 178.90564 * 9 8 6 11 11 C 1.55155 * 102.94491 * 337.80770 * 10 9 8 12 12 H 1.09003 * 111.03608 * 277.41752 * 11 10 9 13 13 N 1.46901 * 111.00508 * 153.57562 * 11 10 9 14 14 C 1.46891 * 110.99746 * 62.39734 * 13 11 10 15 15 C 1.46902 * 110.99644 * 186.35077 * 13 11 10 16 16 C 1.50706 * 109.46577 * 169.99988 * 15 13 11 17 17 O 1.21292 * 120.00254 * 359.97438 * 16 15 13 18 18 N 1.34777 * 119.99762 * 179.97438 * 16 15 13 19 19 C 1.37095 * 119.99962 * 179.97438 * 18 16 15 20 20 H 1.07999 * 119.99996 * 0.02562 * 19 18 16 21 21 C 1.38956 * 120.00021 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99899 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00157 * 180.02562 * 21 19 18 24 24 H 1.48505 * 109.46819 * 59.99938 * 23 21 19 25 25 H 1.48494 * 109.47285 * 179.97438 * 23 21 19 26 26 H 1.48494 * 109.47196 * 300.00436 * 23 21 19 27 27 C 1.47426 * 125.64994 * 179.97438 * 8 6 5 28 28 C 1.36546 * 108.02651 * 359.59885 * 5 4 3 29 29 H 1.09004 * 109.47067 * 269.99742 * 1 2 3 30 30 H 1.08999 * 109.47437 * 29.99433 * 1 2 3 31 31 H 1.08999 * 109.47163 * 150.00279 * 1 2 3 32 32 H 1.08004 * 125.60918 * 0.04001 * 3 2 1 33 33 H 1.08999 * 109.88026 * 298.31896 * 9 8 6 34 34 H 1.09000 * 109.88357 * 59.33798 * 9 8 6 35 35 H 1.08995 * 110.71972 * 219.44298 * 10 9 8 36 36 H 1.09000 * 110.71906 * 96.17371 * 10 9 8 37 37 H 1.09003 * 109.47237 * 183.95504 * 14 13 11 38 38 H 1.08998 * 109.47394 * 303.94903 * 14 13 11 39 39 H 1.09003 * 109.47554 * 63.95496 * 14 13 11 40 40 H 1.09000 * 109.46894 * 50.00222 * 15 13 11 41 41 H 1.09000 * 109.47263 * 289.99788 * 15 13 11 42 42 H 0.96999 * 120.00047 * 0.02562 * 18 16 15 43 43 H 0.96991 * 120.00225 * 179.97438 * 22 21 19 44 44 H 1.08998 * 110.36800 * 85.32134 * 27 8 6 45 45 H 1.09005 * 110.45655 * 323.04406 * 27 8 6 46 46 H 1.08004 * 126.64223 * 180.26564 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0054 5 6 3.6260 -0.6682 0.0000 6 6 4.8378 -1.4942 0.0003 7 8 4.7470 -2.7078 0.0008 8 7 6.0520 -0.9093 0.0003 9 6 6.3055 0.5389 0.0007 10 6 7.8358 0.7362 0.0286 11 6 8.3487 -0.6063 0.6135 12 1 8.2883 -0.6075 1.7018 13 7 9.7190 -0.8869 0.1646 14 6 10.6505 0.1441 0.6412 15 6 10.1498 -2.2244 0.5931 16 6 11.4495 -2.5745 -0.0847 17 8 11.9658 -1.7876 -0.8498 18 7 12.0381 -3.7622 0.1593 19 6 13.2202 -4.0810 -0.4577 20 1 13.6799 -3.3803 -1.1389 21 6 13.8268 -5.3057 -0.2065 22 7 13.2671 -6.1584 0.6220 23 14 15.4377 -5.7398 -1.0466 24 1 16.4740 -4.7432 -0.6749 25 1 15.8736 -7.0915 -0.6130 26 1 15.2466 -5.7294 -2.5191 27 6 7.3460 -1.6157 0.0012 28 6 2.3407 -1.1292 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8900 -0.5137 31 1 -0.3633 -0.8900 -0.5138 32 1 1.9770 2.1145 0.0006 33 1 5.8902 0.9881 -0.9014 34 1 5.8546 0.9939 0.8827 35 1 8.1056 1.5682 0.6790 36 1 8.2231 0.8912 -0.9784 37 1 11.6442 -0.0491 0.2369 38 1 10.3080 1.1244 0.3100 39 1 10.6908 0.1221 1.7302 40 1 9.3891 -2.9558 0.3203 41 1 10.2902 -2.2319 1.6740 42 1 11.6251 -4.3917 0.7709 43 1 13.6903 -7.0134 0.7971 44 1 7.6394 -1.8713 -1.0170 45 1 7.2892 -2.5141 0.6158 46 1 2.0266 -2.1626 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191849050.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:46 Heat of formation + Delta-G solvation = -61.754697 kcal Electronic energy + Delta-G solvation = -28451.913559 eV Core-core repulsion = 24342.781941 eV Total energy + Delta-G solvation = -4109.131619 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.72016 -41.22005 -40.28464 -39.01926 -36.84618 -35.79788 -35.14995 -33.28248 -32.39873 -31.44765 -30.10690 -29.32917 -28.10951 -26.73774 -25.85475 -24.38403 -23.11126 -22.05993 -21.46420 -20.90366 -20.33504 -19.83510 -18.60189 -18.06106 -17.66389 -17.50599 -17.29572 -16.56822 -16.49879 -16.21413 -16.03808 -15.59647 -15.40626 -15.06769 -14.69385 -14.52560 -14.24996 -14.18196 -13.96039 -13.93216 -13.87255 -13.61387 -13.52076 -13.40572 -13.08203 -12.79805 -12.62000 -12.54604 -12.44025 -12.36095 -12.13266 -11.94682 -11.87289 -11.54621 -11.44296 -10.75490 -10.28579 -10.00026 -9.95664 -9.52199 -9.27051 -8.45589 -5.94425 -0.02703 1.32389 1.39858 1.41451 1.46821 1.52688 1.97005 1.99624 2.05690 2.28789 2.74237 3.20170 3.22655 3.40737 3.59330 3.63187 3.81133 4.01036 4.04963 4.14450 4.23375 4.28000 4.31261 4.37648 4.47991 4.55844 4.58189 4.64162 4.71555 4.73799 4.82387 4.85867 4.89095 4.96970 5.03167 5.07854 5.10236 5.16087 5.26946 5.41591 5.51308 5.82474 5.86522 6.03759 6.16240 6.25495 6.60877 6.78927 7.13392 7.56891 8.12287 8.71659 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.024577 B = 0.002061 C = 0.001936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.012117 B =13579.639533 C =14458.975996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.207 4.207 3 C 0.010 3.990 4 O -0.159 6.159 5 C -0.098 4.098 6 C 0.609 3.391 7 O -0.567 6.567 8 N -0.608 5.608 9 C 0.107 3.893 10 C -0.112 4.112 11 C 0.074 3.926 12 H 0.071 0.929 13 N -0.523 5.523 14 C 0.028 3.972 15 C 0.054 3.946 16 C 0.444 3.556 17 O -0.610 6.610 18 N -0.576 5.576 19 C -0.332 4.332 20 H 0.081 0.919 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.272 1.272 26 H -0.273 1.273 27 C 0.112 3.888 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.255 0.745 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.112 0.888 36 H 0.085 0.915 37 H 0.058 0.942 38 H 0.091 0.909 39 H 0.031 0.969 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.395 0.605 43 H 0.277 0.723 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.842 18.299 3.332 31.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.060 4.060 4 O -0.054 6.054 5 C -0.150 4.150 6 C 0.399 3.601 7 O -0.448 6.448 8 N -0.340 5.340 9 C -0.015 4.015 10 C -0.150 4.150 11 C -0.035 4.035 12 H 0.088 0.912 13 N -0.247 5.247 14 C -0.120 4.120 15 C -0.078 4.078 16 C 0.231 3.769 17 O -0.496 6.496 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.099 0.901 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.818 3.182 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.011 4.011 28 C -0.145 4.145 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.084 0.916 32 H 0.271 0.729 33 H 0.103 0.897 34 H 0.109 0.891 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.076 0.924 38 H 0.109 0.891 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.087 0.913 42 H 0.228 0.772 43 H 0.086 0.914 44 H 0.087 0.913 45 H 0.089 0.911 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.253 18.164 2.378 30.394 hybrid contribution 0.675 -1.383 0.736 1.706 sum -23.579 16.781 3.114 29.108 Atomic orbital electron populations 1.20257 0.86626 1.03852 1.03139 1.20829 0.99145 0.91627 1.09268 1.25175 0.78816 1.01677 1.00321 1.84130 1.30464 1.20298 1.70544 1.21481 0.94965 0.81548 1.16973 1.16496 0.81099 0.85835 0.76664 1.90871 1.86222 1.14077 1.53647 1.48330 1.04626 1.09664 1.71337 1.22290 0.96730 0.78649 1.03789 1.22723 0.92392 0.96349 1.03528 1.22787 0.86889 0.95959 0.97864 0.91156 1.61548 1.01553 1.01107 1.60538 1.22448 0.97073 0.95034 0.97411 1.21780 0.94956 0.92837 0.98186 1.20650 0.88037 0.82567 0.85661 1.90456 1.67500 1.50761 1.40903 1.41947 1.21649 1.15997 1.41704 1.19637 0.99735 1.02013 1.24739 0.90082 1.26068 1.02834 0.95093 0.97494 1.69674 1.41379 1.09336 1.35915 0.84974 0.77338 0.77600 0.78334 1.19505 1.19643 1.19787 1.22228 0.81502 0.95690 1.01683 1.22078 0.90886 1.01414 1.00138 0.90490 0.89278 0.91571 0.72885 0.89746 0.89140 0.86983 0.89639 0.92370 0.89087 0.95089 0.88247 0.91317 0.77192 0.91368 0.91327 0.91092 0.82971 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.39 71.23 0.74 0.14 16 2 C -0.21 -2.74 6.14 -20.06 -0.12 -2.87 16 3 C 0.01 0.09 12.00 67.10 0.81 0.90 16 4 O -0.16 -2.59 8.27 -5.00 -0.04 -2.63 16 5 C -0.10 -2.21 6.95 24.07 0.17 -2.05 16 6 C 0.61 17.35 7.82 86.44 0.68 18.03 16 7 O -0.57 -20.49 17.12 -4.34 -0.07 -20.56 16 8 N -0.61 -14.99 3.33 -816.53 -2.72 -17.70 16 9 C 0.11 1.80 5.55 86.73 0.48 2.28 16 10 C -0.11 -1.90 5.37 31.78 0.17 -1.73 16 11 C 0.07 1.73 2.71 46.30 0.13 1.85 16 12 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 13 N -0.52 -16.20 4.40 -893.47 -3.93 -20.13 16 14 C 0.03 0.81 9.04 127.69 1.15 1.97 16 15 C 0.05 1.90 5.32 85.56 0.46 2.35 16 16 C 0.44 21.30 7.51 87.66 0.66 21.96 16 17 O -0.61 -33.35 13.89 -3.07 -0.04 -33.39 16 18 N -0.58 -30.12 5.29 -306.98 -1.62 -31.75 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 21 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 22 N -0.92 -50.87 13.05 21.66 0.28 -50.59 16 23 Si 0.99 43.62 29.55 68.60 2.03 45.64 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 27 C 0.11 3.02 5.32 86.85 0.46 3.49 16 28 C -0.12 -2.51 10.57 22.39 0.24 -2.28 16 29 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.52 16 32 H 0.26 -0.09 8.06 -2.91 -0.02 -0.11 16 33 H 0.08 1.29 7.80 -2.39 -0.02 1.27 16 34 H 0.09 1.24 7.66 -2.39 -0.02 1.22 16 35 H 0.11 1.31 8.01 -2.39 -0.02 1.29 16 36 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 37 H 0.06 2.22 5.88 -2.39 -0.01 2.20 16 38 H 0.09 2.08 7.02 -2.39 -0.02 2.06 16 39 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.10 3.33 6.67 -2.39 -0.02 3.31 16 41 H 0.07 2.18 8.12 -2.39 -0.02 2.16 16 42 H 0.39 19.85 7.90 -92.71 -0.73 19.12 16 43 H 0.28 14.36 8.31 -92.71 -0.77 13.59 16 44 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.07 2.06 7.68 -2.38 -0.02 2.04 16 46 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -76.38 381.40 1.45 -74.93 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.27 Total: 30.74 kcal Atomic # 6 Polarization: 18.14 SS G_CDS: 7.29 Total: 25.43 kcal Atomic # 7 Polarization: -112.18 SS G_CDS: -7.99 Total: -120.17 kcal Atomic # 8 Polarization: -56.42 SS G_CDS: -0.16 Total: -56.58 kcal Atomic # 14 Polarization: 43.62 SS G_CDS: 2.03 Total: 45.64 kcal Total: -76.38 1.45 -74.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191849050.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.178 kcal (2) G-P(sol) polarization free energy of solvation -76.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds