Wall clock time and date at job start Tue Mar 31 2020 19:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40366 * 126.64374 * 2 1 4 4 C 1.35132 * 107.11213 * 179.73686 * 3 2 1 5 5 O 1.33925 * 108.76780 * 0.22146 * 4 3 2 6 6 C 1.34909 * 109.38637 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98713 * 180.02562 * 6 5 4 8 8 O 1.21703 * 119.99902 * 172.36381 * 7 6 5 9 9 N 1.34773 * 120.00066 * 352.35473 * 7 6 5 10 10 C 1.46928 * 120.63344 * 3.51401 * 9 7 6 11 11 C 1.52760 * 109.00744 * 233.58514 * 10 9 7 12 12 C 1.53042 * 109.37926 * 305.58002 * 11 10 9 13 13 N 1.46905 * 109.44596 * 181.25575 * 12 11 10 14 14 C 1.46901 * 110.99865 * 84.94364 * 13 12 11 15 15 C 1.50692 * 109.46902 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00308 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99858 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99960 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99871 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99987 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00273 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47416 * 59.99756 * 22 20 18 24 24 H 1.48495 * 109.47580 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46920 * 299.99697 * 22 20 18 26 26 C 1.53045 * 109.53808 * 61.24625 * 12 11 10 27 27 C 1.46927 * 120.62958 * 183.78629 * 9 7 6 28 28 H 1.09001 * 109.47303 * 90.02597 * 1 2 3 29 29 H 1.09002 * 109.47160 * 210.02490 * 1 2 3 30 30 H 1.09006 * 109.47161 * 330.02547 * 1 2 3 31 31 H 1.08001 * 126.44416 * 359.97438 * 3 2 1 32 32 H 1.08003 * 125.61564 * 180.24542 * 4 3 2 33 33 H 1.08997 * 109.57990 * 353.41086 * 10 9 7 34 34 H 1.08995 * 109.59059 * 113.83440 * 10 9 7 35 35 H 1.09004 * 109.56392 * 185.55108 * 11 10 9 36 36 H 1.08998 * 109.36616 * 65.49040 * 11 10 9 37 37 H 1.09003 * 109.46308 * 301.22040 * 12 11 10 38 38 H 1.00891 * 111.00327 * 320.98410 * 13 12 11 39 39 H 1.08996 * 109.46909 * 299.99517 * 14 13 12 40 40 H 1.08999 * 109.47181 * 59.99512 * 14 13 12 41 41 H 0.96993 * 119.99925 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99980 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.49777 * 178.68004 * 26 12 11 44 44 H 1.09000 * 109.49863 * 58.58099 * 26 12 11 45 45 H 1.09001 * 109.59074 * 246.15310 * 27 9 7 46 46 H 1.09003 * 109.58912 * 6.44586 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6745 0.0059 5 8 3.6004 -0.6647 0.0046 6 6 2.3220 -1.0955 -0.0027 7 6 1.8843 -2.4952 -0.0058 8 8 0.7049 -2.7643 0.1276 9 7 2.7881 -3.4835 -0.1565 10 6 4.2230 -3.1793 -0.2418 11 6 4.7925 -3.8171 -1.5076 12 6 4.4652 -5.3121 -1.5143 13 7 5.0381 -5.9328 -2.7163 14 6 6.4427 -6.3040 -2.4985 15 6 6.9948 -6.9366 -3.7498 16 8 6.2877 -7.0661 -4.7268 17 7 8.2744 -7.3587 -3.7834 18 6 8.7769 -7.9338 -4.9220 19 1 8.1472 -8.0490 -5.7919 20 6 10.0958 -8.3693 -4.9565 21 7 10.8618 -8.2295 -3.8979 22 14 10.7803 -9.1536 -6.5076 23 1 10.6923 -8.1869 -7.6314 24 1 12.1999 -9.5294 -6.2873 25 1 9.9926 -10.3687 -6.8369 26 6 2.9468 -5.5037 -1.5160 27 6 2.3568 -4.8853 -0.2446 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8903 0.5135 31 1 2.0305 2.1596 -0.0004 32 1 4.5045 1.2917 0.0113 33 1 4.3656 -2.0994 -0.2825 34 1 4.7351 -3.5848 0.6307 35 1 5.8738 -3.6814 -1.5300 36 1 4.3476 -3.3434 -2.3827 37 1 4.8895 -5.7808 -0.6263 38 1 4.9445 -5.3255 -3.5165 39 1 7.0208 -5.4122 -2.2564 40 1 6.5073 -7.0139 -1.6739 41 1 8.8398 -7.2555 -3.0021 42 1 11.7828 -8.5333 -3.9221 43 1 2.7145 -6.5683 -1.5444 44 1 2.5193 -5.0140 -2.3909 45 1 2.7137 -5.4330 0.6276 46 1 1.2685 -4.9310 -0.2848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001199311025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:44 Heat of formation + Delta-G solvation = -44.421852 kcal Electronic energy + Delta-G solvation = -28523.230426 eV Core-core repulsion = 24414.850415 eV Total energy + Delta-G solvation = -4108.380010 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.14362 -40.22816 -38.55671 -37.74437 -35.33653 -34.34467 -33.85980 -32.02722 -31.30194 -30.96139 -30.45598 -28.08589 -26.76485 -24.84115 -23.71568 -23.57462 -22.43315 -21.73627 -20.56980 -19.71080 -19.16500 -17.95849 -17.78492 -16.98383 -16.71789 -16.17827 -15.98715 -15.42926 -14.99082 -14.80825 -14.67265 -14.49364 -14.06393 -13.95575 -13.78402 -13.67601 -13.55082 -13.45312 -13.31078 -12.93230 -12.62062 -12.38845 -12.15910 -12.13501 -11.84114 -11.59109 -11.46650 -11.34402 -11.05342 -10.89327 -10.64295 -10.45064 -10.32026 -10.22172 -10.05819 -9.51115 -9.16443 -8.80229 -8.47489 -8.05249 -7.96688 -6.42708 -3.83606 0.72393 1.98640 2.25001 2.74904 2.89298 3.19439 3.25137 3.29623 3.89526 4.05441 4.11569 4.28032 4.39656 4.46306 4.59458 4.77902 4.82114 5.00455 5.06793 5.09519 5.12356 5.18442 5.23033 5.27321 5.29005 5.41623 5.50151 5.51561 5.60924 5.71013 5.71577 5.77987 5.81484 5.89813 5.96760 6.00545 6.08574 6.14251 6.27552 6.33471 6.52047 7.04127 7.21575 7.54073 7.63930 7.75653 8.05110 8.60217 9.16815 9.53107 10.04687 10.74906 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.002004 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.775893 B =13969.285389 C =14599.162760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.085 4.085 3 C -0.224 4.224 4 C -0.012 4.012 5 O -0.156 6.156 6 C -0.085 4.085 7 C 0.603 3.397 8 O -0.523 6.523 9 N -0.600 5.600 10 C 0.094 3.906 11 C -0.167 4.167 12 C 0.088 3.912 13 N -0.662 5.662 14 C 0.051 3.949 15 C 0.440 3.560 16 O -0.583 6.583 17 N -0.564 5.564 18 C -0.300 4.300 19 H 0.102 0.898 20 C 0.022 3.978 21 N -0.902 5.902 22 Si 0.931 3.069 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.273 1.273 26 C -0.121 4.121 27 C 0.113 3.887 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.067 0.933 31 H 0.155 0.845 32 H 0.209 0.791 33 H 0.111 0.889 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.350 0.650 39 H 0.043 0.957 40 H 0.086 0.914 41 H 0.392 0.608 42 H 0.272 0.728 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.010 17.978 13.204 26.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.088 4.088 3 C -0.243 4.243 4 C -0.081 4.081 5 O -0.053 6.053 6 C -0.136 4.136 7 C 0.392 3.608 8 O -0.402 6.402 9 N -0.332 5.332 10 C -0.028 4.028 11 C -0.206 4.206 12 C -0.023 4.023 13 N -0.293 5.293 14 C -0.082 4.082 15 C 0.225 3.775 16 O -0.467 6.467 17 N -0.200 5.200 18 C -0.429 4.429 19 H 0.120 0.880 20 C -0.180 4.180 21 N -0.544 5.544 22 Si 0.758 3.242 23 H -0.199 1.199 24 H -0.210 1.210 25 H -0.199 1.199 26 C -0.160 4.160 27 C -0.009 4.009 28 H 0.092 0.908 29 H 0.107 0.893 30 H 0.086 0.914 31 H 0.173 0.827 32 H 0.225 0.775 33 H 0.128 0.872 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.088 0.912 37 H 0.097 0.903 38 H 0.170 0.830 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.225 0.775 42 H 0.082 0.918 43 H 0.106 0.894 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -14.882 16.796 12.773 25.821 hybrid contribution 1.517 0.862 -0.308 1.772 sum -13.365 17.658 12.466 25.413 Atomic orbital electron populations 1.20460 0.88223 1.03770 1.02951 1.20651 0.97664 0.91000 0.99496 1.21745 0.92430 1.00127 1.09987 1.24555 1.00010 0.81508 1.02040 1.84203 1.27950 1.21938 1.71203 1.21842 0.81535 0.94692 1.15551 1.16672 0.85328 0.81829 0.77002 1.90828 1.16100 1.82033 1.51235 1.48046 1.07171 1.06971 1.71059 1.22199 0.79490 1.02717 0.98384 1.22650 1.01682 0.98033 0.98281 1.21608 0.95112 0.91192 0.94405 1.60179 1.16655 1.47603 1.04886 1.21705 0.88808 0.99349 0.98338 1.19826 0.83135 0.85072 0.89431 1.90526 1.58590 1.60731 1.36891 1.41861 1.09646 1.53247 1.15286 1.19654 0.95320 1.34989 0.92954 0.87986 1.25262 0.96119 0.97922 0.98657 1.69606 1.08243 1.47535 1.28973 0.85913 0.77563 0.79572 0.81146 1.19925 1.20983 1.19873 1.21904 0.94757 1.02166 0.97164 1.21756 1.01501 0.79319 0.98349 0.90820 0.89274 0.91422 0.82731 0.77451 0.87216 0.90859 0.90310 0.91154 0.90255 0.83015 0.93904 0.89616 0.77473 0.91827 0.89360 0.91342 0.90981 0.88555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.85 9.89 36.00 0.36 -0.49 16 2 C -0.09 -0.84 6.20 -104.44 -0.65 -1.48 16 3 C -0.22 -1.66 10.83 -39.89 -0.43 -2.09 16 4 C -0.01 -0.08 12.08 29.63 0.36 0.28 16 5 O -0.16 -1.42 7.08 5.02 0.04 -1.39 16 6 C -0.09 -0.93 6.85 -36.80 -0.25 -1.18 16 7 C 0.60 7.37 7.66 -12.86 -0.10 7.27 16 8 O -0.52 -7.45 14.15 5.19 0.07 -7.38 16 9 N -0.60 -6.42 2.98 -174.58 -0.52 -6.94 16 10 C 0.09 0.88 6.28 -3.93 -0.02 0.85 16 11 C -0.17 -1.70 5.31 -26.83 -0.14 -1.85 16 12 C 0.09 1.02 2.43 -67.66 -0.16 0.85 16 13 N -0.66 -10.33 5.87 -107.94 -0.63 -10.97 16 14 C 0.05 0.86 5.96 -4.98 -0.03 0.83 16 15 C 0.44 10.29 7.82 -10.99 -0.09 10.21 16 16 O -0.58 -15.83 15.78 5.55 0.09 -15.74 16 17 N -0.56 -14.19 5.29 -10.97 -0.06 -14.25 16 18 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 19 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 20 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 21 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 22 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 24 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 26 C -0.12 -1.33 5.69 -26.61 -0.15 -1.48 16 27 C 0.11 1.13 6.43 -3.71 -0.02 1.11 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 0.92 6.33 -51.93 -0.33 0.59 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.15 0.78 8.06 -52.49 -0.42 0.35 16 32 H 0.21 0.54 8.06 -52.48 -0.42 0.12 16 33 H 0.11 1.00 3.77 -55.33 -0.21 0.79 16 34 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.79 7.42 -51.93 -0.39 0.40 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.08 0.88 7.80 -51.93 -0.40 0.48 16 38 H 0.35 5.77 8.18 -39.30 -0.32 5.45 16 39 H 0.04 0.65 7.41 -51.93 -0.38 0.26 16 40 H 0.09 1.35 8.05 -51.93 -0.42 0.93 16 41 H 0.39 9.39 7.90 -40.82 -0.32 9.07 16 42 H 0.27 6.97 8.31 -40.82 -0.34 6.64 16 43 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 1.02 7.02 -51.93 -0.36 0.66 16 LS Contribution 376.14 15.07 5.67 5.67 Total: -1.00 -33.24 376.14 -7.68 -40.92 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: -6.45 Total: 12.92 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.58 Total: 4.83 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.49 Total: -55.83 kcal Atomic # 8 Polarization: -24.70 SS G_CDS: 0.20 Total: -24.50 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.24 -7.68 -40.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199311025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.504 kcal (2) G-P(sol) polarization free energy of solvation -33.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds