Wall clock time and date at job start Tue Mar 31 2020 19:04:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40366 * 126.64374 * 2 1 4 4 C 1.35132 * 107.11213 * 179.73686 * 3 2 1 5 5 O 1.33925 * 108.76780 * 0.22146 * 4 3 2 6 6 C 1.34909 * 109.38637 * 0.02562 * 5 4 3 7 7 C 1.46657 * 125.98713 * 180.02562 * 6 5 4 8 8 O 1.21703 * 119.99902 * 172.36381 * 7 6 5 9 9 N 1.34773 * 120.00066 * 352.35473 * 7 6 5 10 10 C 1.46928 * 120.63344 * 3.51401 * 9 7 6 11 11 C 1.52760 * 109.00744 * 233.58514 * 10 9 7 12 12 C 1.53042 * 109.37926 * 305.58002 * 11 10 9 13 13 N 1.46905 * 109.44596 * 181.25575 * 12 11 10 14 14 C 1.46901 * 110.99865 * 84.94364 * 13 12 11 15 15 C 1.50692 * 109.46902 * 179.97438 * 14 13 12 16 16 O 1.21291 * 120.00308 * 359.97438 * 15 14 13 17 17 N 1.34783 * 119.99858 * 179.97438 * 15 14 13 18 18 C 1.37101 * 119.99960 * 180.02562 * 17 15 14 19 19 H 1.08001 * 119.99871 * 359.97438 * 18 17 15 20 20 C 1.38943 * 119.99987 * 180.02562 * 18 17 15 21 21 N 1.31415 * 120.00081 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00273 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47416 * 59.99756 * 22 20 18 24 24 H 1.48495 * 109.47580 * 180.02562 * 22 20 18 25 25 H 1.48509 * 109.46920 * 299.99697 * 22 20 18 26 26 C 1.53045 * 109.53808 * 61.24625 * 12 11 10 27 27 C 1.46927 * 120.62958 * 183.78629 * 9 7 6 28 28 H 1.09001 * 109.47303 * 90.02597 * 1 2 3 29 29 H 1.09002 * 109.47160 * 210.02490 * 1 2 3 30 30 H 1.09006 * 109.47161 * 330.02547 * 1 2 3 31 31 H 1.08001 * 126.44416 * 359.97438 * 3 2 1 32 32 H 1.08003 * 125.61564 * 180.24542 * 4 3 2 33 33 H 1.08997 * 109.57990 * 353.41086 * 10 9 7 34 34 H 1.08995 * 109.59059 * 113.83440 * 10 9 7 35 35 H 1.09004 * 109.56392 * 185.55108 * 11 10 9 36 36 H 1.08998 * 109.36616 * 65.49040 * 11 10 9 37 37 H 1.09003 * 109.46308 * 301.22040 * 12 11 10 38 38 H 1.00891 * 111.00327 * 320.98410 * 13 12 11 39 39 H 1.08996 * 109.46909 * 299.99517 * 14 13 12 40 40 H 1.08999 * 109.47181 * 59.99512 * 14 13 12 41 41 H 0.96993 * 119.99925 * 0.02562 * 17 15 14 42 42 H 0.97003 * 119.99980 * 180.02562 * 21 20 18 43 43 H 1.09005 * 109.49777 * 178.68004 * 26 12 11 44 44 H 1.09000 * 109.49863 * 58.58099 * 26 12 11 45 45 H 1.09001 * 109.59074 * 246.15310 * 27 9 7 46 46 H 1.09003 * 109.58912 * 6.44586 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1262 0.0000 4 6 3.6183 0.6745 0.0059 5 8 3.6004 -0.6647 0.0046 6 6 2.3220 -1.0955 -0.0027 7 6 1.8843 -2.4952 -0.0058 8 8 0.7049 -2.7643 0.1276 9 7 2.7881 -3.4835 -0.1565 10 6 4.2230 -3.1793 -0.2418 11 6 4.7925 -3.8171 -1.5076 12 6 4.4652 -5.3121 -1.5143 13 7 5.0381 -5.9328 -2.7163 14 6 6.4427 -6.3040 -2.4985 15 6 6.9948 -6.9366 -3.7498 16 8 6.2877 -7.0661 -4.7268 17 7 8.2744 -7.3587 -3.7834 18 6 8.7769 -7.9338 -4.9220 19 1 8.1472 -8.0490 -5.7919 20 6 10.0958 -8.3693 -4.9565 21 7 10.8618 -8.2295 -3.8979 22 14 10.7803 -9.1536 -6.5076 23 1 10.6923 -8.1869 -7.6314 24 1 12.1999 -9.5294 -6.2873 25 1 9.9926 -10.3687 -6.8369 26 6 2.9468 -5.5037 -1.5160 27 6 2.3568 -4.8853 -0.2446 28 1 -0.3634 -0.0005 -1.0277 29 1 -0.3633 -0.8898 0.5142 30 1 -0.3634 0.8903 0.5135 31 1 2.0305 2.1596 -0.0004 32 1 4.5045 1.2917 0.0113 33 1 4.3656 -2.0994 -0.2825 34 1 4.7351 -3.5848 0.6307 35 1 5.8738 -3.6814 -1.5300 36 1 4.3476 -3.3434 -2.3827 37 1 4.8895 -5.7808 -0.6263 38 1 4.9445 -5.3255 -3.5165 39 1 7.0208 -5.4122 -2.2564 40 1 6.5073 -7.0139 -1.6739 41 1 8.8398 -7.2555 -3.0021 42 1 11.7828 -8.5333 -3.9221 43 1 2.7145 -6.5683 -1.5444 44 1 2.5193 -5.0140 -2.3909 45 1 2.7137 -5.4330 0.6276 46 1 1.2685 -4.9310 -0.2848 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001199311025.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:43 Heat of formation + Delta-G solvation = -68.409616 kcal Electronic energy + Delta-G solvation = -28524.270613 eV Core-core repulsion = 24414.850415 eV Total energy + Delta-G solvation = -4109.420198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.77758 -41.10415 -40.16729 -38.94198 -36.47186 -35.82472 -35.02416 -33.30669 -32.87578 -32.01433 -31.12370 -28.93407 -28.13196 -26.32352 -24.86719 -24.44783 -23.22295 -22.45668 -21.49256 -21.01365 -20.37314 -19.88029 -18.64922 -17.90161 -17.52239 -17.39018 -16.92185 -16.78080 -16.37838 -16.10038 -15.90868 -15.48785 -15.42394 -15.25479 -14.87468 -14.61846 -14.45735 -14.25588 -14.06971 -13.95878 -13.66029 -13.59168 -13.46035 -13.20368 -13.06574 -12.85875 -12.78841 -12.54126 -12.42888 -12.20778 -12.12342 -11.81839 -11.56814 -11.49837 -11.18086 -10.67736 -10.34448 -10.01337 -9.97208 -9.50661 -9.26868 -8.46335 -5.94980 0.01095 1.39905 1.40642 1.42020 1.52686 1.56006 1.98276 2.05998 2.10825 2.29406 2.89911 3.20939 3.41844 3.50071 3.73969 3.80018 3.90986 3.95424 3.99692 4.15780 4.28483 4.33000 4.41192 4.43426 4.49454 4.59870 4.62203 4.62695 4.67338 4.73422 4.74844 4.86162 4.93742 4.97390 5.10393 5.13529 5.23187 5.27448 5.41116 5.41875 5.55290 5.88251 5.91438 6.13064 6.23909 6.38377 6.60827 6.90355 7.13069 7.56926 8.12602 8.70648 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023647 B = 0.002004 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1183.775893 B =13969.285389 C =14599.162760 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.095 4.095 3 C -0.235 4.235 4 C 0.004 3.996 5 O -0.162 6.162 6 C -0.118 4.118 7 C 0.596 3.404 8 O -0.556 6.556 9 N -0.601 5.601 10 C 0.097 3.903 11 C -0.158 4.158 12 C 0.091 3.909 13 N -0.678 5.678 14 C 0.067 3.933 15 C 0.436 3.564 16 O -0.626 6.626 17 N -0.573 5.573 18 C -0.335 4.335 19 H 0.077 0.923 20 C -0.013 4.013 21 N -0.919 5.919 22 Si 0.992 3.008 23 H -0.272 1.272 24 H -0.270 1.270 25 H -0.273 1.273 26 C -0.114 4.114 27 C 0.117 3.883 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.089 0.911 31 H 0.180 0.820 32 H 0.251 0.749 33 H 0.117 0.883 34 H 0.091 0.909 35 H 0.087 0.913 36 H 0.057 0.943 37 H 0.094 0.906 38 H 0.342 0.658 39 H 0.070 0.930 40 H 0.106 0.894 41 H 0.397 0.603 42 H 0.278 0.722 43 H 0.086 0.914 44 H 0.052 0.948 45 H 0.091 0.909 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.727 19.452 14.326 27.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.253 4.253 4 C -0.064 4.064 5 O -0.059 6.059 6 C -0.169 4.169 7 C 0.386 3.614 8 O -0.438 6.438 9 N -0.332 5.332 10 C -0.025 4.025 11 C -0.198 4.198 12 C -0.019 4.019 13 N -0.308 5.308 14 C -0.066 4.066 15 C 0.224 3.776 16 O -0.512 6.512 17 N -0.210 5.210 18 C -0.464 4.464 19 H 0.095 0.905 20 C -0.213 4.213 21 N -0.560 5.560 22 Si 0.816 3.184 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.199 1.199 26 C -0.153 4.153 27 C -0.005 4.005 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.197 0.803 32 H 0.267 0.733 33 H 0.134 0.866 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.161 0.839 39 H 0.088 0.912 40 H 0.124 0.876 41 H 0.231 0.769 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.109 0.891 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -13.580 18.273 13.931 26.691 hybrid contribution 1.085 0.493 -0.642 1.354 sum -12.495 18.766 13.289 26.171 Atomic orbital electron populations 1.20447 0.88112 1.03777 1.02945 1.21016 0.98205 0.91859 0.98685 1.22071 0.92342 1.00638 1.10275 1.25449 1.01340 0.80626 0.98986 1.84154 1.27027 1.23300 1.71399 1.21648 0.82552 0.94267 1.18413 1.16943 0.85121 0.82727 0.76619 1.90798 1.17336 1.82737 1.52921 1.48138 1.07690 1.06878 1.70475 1.22283 0.78549 1.03235 0.98402 1.22543 1.02105 0.96744 0.98369 1.21669 0.95014 0.92083 0.93141 1.60168 1.15865 1.48584 1.06209 1.21566 0.89681 1.00299 0.95018 1.20956 0.82173 0.83610 0.90897 1.90496 1.59471 1.62067 1.39205 1.41925 1.10515 1.53714 1.14835 1.19612 0.96015 1.37272 0.93522 0.90464 1.26023 0.95822 0.97784 1.01629 1.69660 1.08594 1.47508 1.30210 0.85005 0.77363 0.78499 0.77570 1.19706 1.19430 1.19859 1.21813 0.94458 1.01918 0.97063 1.21724 1.00965 0.79372 0.98463 0.90800 0.91369 0.89248 0.80298 0.73274 0.86650 0.89091 0.89447 0.92388 0.88770 0.83898 0.91190 0.87642 0.76888 0.91278 0.89569 0.92932 0.89081 0.89557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.68 9.89 71.23 0.70 -0.97 16 2 C -0.09 -1.78 6.20 -19.74 -0.12 -1.91 16 3 C -0.23 -2.90 10.83 22.07 0.24 -2.67 16 4 C 0.00 0.04 12.08 67.10 0.81 0.85 16 5 O -0.16 -2.64 7.08 -4.94 -0.03 -2.67 16 6 C -0.12 -2.51 6.85 24.07 0.16 -2.35 16 7 C 0.60 14.75 7.66 86.44 0.66 15.41 16 8 O -0.56 -16.56 14.15 -4.36 -0.06 -16.62 16 9 N -0.60 -12.47 2.98 -824.45 -2.46 -14.93 16 10 C 0.10 1.62 6.28 86.22 0.54 2.16 16 11 C -0.16 -2.96 5.31 30.53 0.16 -2.79 16 12 C 0.09 1.97 2.43 44.94 0.11 2.07 16 13 N -0.68 -20.53 5.87 -495.43 -2.91 -23.44 16 14 C 0.07 2.16 5.96 85.55 0.51 2.67 16 15 C 0.44 20.46 7.82 87.65 0.69 21.15 16 16 O -0.63 -34.73 15.78 -3.06 -0.05 -34.78 16 17 N -0.57 -29.03 5.29 -306.99 -1.62 -30.65 16 18 C -0.33 -18.94 9.68 84.04 0.81 -18.13 16 19 H 0.08 4.68 7.16 -2.91 -0.02 4.65 16 20 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 21 N -0.92 -49.04 13.05 21.66 0.28 -48.76 16 22 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 24 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 25 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 26 C -0.11 -2.44 5.69 30.67 0.17 -2.27 16 27 C 0.12 2.28 6.43 86.36 0.55 2.84 16 28 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 29 H 0.07 1.48 6.33 -2.39 -0.02 1.47 16 30 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 31 H 0.18 1.22 8.06 -2.91 -0.02 1.19 16 32 H 0.25 0.12 8.06 -2.91 -0.02 0.09 16 33 H 0.12 1.87 3.77 -56.27 -0.21 1.66 16 34 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.09 1.51 7.42 -2.38 -0.02 1.50 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.81 7.80 -2.39 -0.02 1.79 16 38 H 0.34 11.27 8.18 -89.70 -0.73 10.54 16 39 H 0.07 1.93 7.41 -2.39 -0.02 1.91 16 40 H 0.11 3.06 8.05 -2.39 -0.02 3.04 16 41 H 0.40 18.94 7.90 -92.71 -0.73 18.21 16 42 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 43 H 0.09 1.89 8.14 -2.38 -0.02 1.87 16 44 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 45 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.09 1.89 7.02 -2.39 -0.02 1.87 16 Total: -1.00 -73.94 376.14 1.02 -72.92 By element: Atomic # 1 Polarization: 38.93 SS G_CDS: -0.64 Total: 38.29 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 6.48 Total: 15.87 kcal Atomic # 7 Polarization: -111.07 SS G_CDS: -6.70 Total: -117.78 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.14 Total: -54.08 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -73.94 1.02 -72.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001199311025.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.514 kcal (2) G-P(sol) polarization free energy of solvation -73.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds