Wall clock time and date at job start Tue Mar 31 2020 19:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34864 * 119.10203 * 2 1 4 4 C 1.41663 * 119.34182 * 179.97438 * 3 2 1 5 5 O 1.22090 * 121.06828 * 180.02562 * 4 3 2 6 6 C 1.47096 * 117.86597 * 0.27210 * 4 3 2 7 7 C 1.47287 * 120.88845 * 179.72761 * 6 4 3 8 8 O 1.21623 * 119.99536 * 53.20377 * 7 6 4 9 9 N 1.34776 * 119.99966 * 233.21244 * 7 6 4 10 10 C 1.47497 * 118.76101 * 5.61628 * 9 7 6 11 11 C 1.53952 * 110.82145 * 138.25241 * 10 9 7 12 12 C 1.51531 * 109.72867 * 320.30770 * 11 10 9 13 13 O 1.42159 * 108.76513 * 91.29369 * 12 11 10 14 14 C 1.38016 * 119.43420 * 272.78417 * 13 12 11 15 15 H 1.09000 * 109.46929 * 303.42403 * 14 13 12 16 16 C 1.53002 * 109.46598 * 183.42931 * 14 13 12 17 17 N 1.46501 * 109.47089 * 64.98924 * 16 14 13 18 18 C 1.36935 * 120.00182 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99735 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47107 * 59.99621 * 22 20 18 24 24 H 1.48496 * 109.47648 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47139 * 299.99940 * 22 20 18 26 26 C 1.45124 * 118.75409 * 185.88389 * 9 7 6 27 27 C 1.37993 * 118.23158 * 359.46905 * 6 4 3 28 28 N 1.34346 * 120.37379 * 0.52701 * 27 6 4 29 29 H 0.96993 * 118.80791 * 179.72061 * 28 27 6 30 30 H 1.08996 * 109.46985 * 90.00245 * 1 2 3 31 31 H 1.09001 * 109.47122 * 209.99733 * 1 2 3 32 32 H 1.08999 * 109.47377 * 330.00022 * 1 2 3 33 33 H 1.08003 * 120.32672 * 359.95640 * 3 2 1 34 34 H 1.08998 * 109.17342 * 258.77072 * 10 9 7 35 35 H 1.09009 * 109.16503 * 17.97377 * 10 9 7 36 36 H 1.08999 * 109.45946 * 200.17367 * 11 10 9 37 37 H 1.08994 * 109.29358 * 80.33592 * 11 10 9 38 38 H 1.09002 * 109.58764 * 331.51230 * 12 11 10 39 39 H 1.08992 * 109.58826 * 211.07702 * 12 11 10 40 40 H 1.09004 * 109.47138 * 184.98482 * 16 14 13 41 41 H 1.08994 * 109.47584 * 304.98846 * 16 14 13 42 42 H 0.97000 * 119.99830 * 359.97438 * 17 16 14 43 43 H 0.97006 * 120.00840 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.45916 * 29.31173 * 26 9 7 45 45 H 1.09002 * 109.46216 * 149.26985 * 26 9 7 46 46 H 1.08003 * 119.81363 * 180.21816 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2725 -0.1132 -0.0051 7 6 5.7436 -0.1847 -0.0109 8 8 6.3848 0.4141 0.8316 9 7 6.3792 -0.9134 -0.9497 10 6 5.5847 -1.5253 -2.0314 11 6 6.3024 -1.3819 -3.3858 12 6 6.9457 -0.0133 -3.4815 13 8 8.2778 -0.0988 -2.9927 14 6 8.5168 0.0636 -1.6431 15 1 8.1238 1.0268 -1.3179 16 6 10.0236 0.0133 -1.3825 17 7 10.6698 1.1569 -2.0312 18 6 12.0257 1.3225 -1.9349 19 1 12.6187 0.6102 -1.3804 20 6 12.6379 2.4063 -2.5491 21 7 11.9153 3.2746 -3.2245 22 14 14.4875 2.6326 -2.4172 23 1 15.1735 1.4534 -3.0035 24 1 14.8904 3.8566 -3.1552 25 1 14.8690 2.7674 -0.9884 26 6 7.8187 -1.0712 -0.8549 27 6 3.5077 -1.2617 0.0007 28 7 2.1664 -1.1847 0.0005 29 1 1.6511 -2.0064 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6136 2.1083 -0.0007 34 1 5.4352 -2.5824 -1.8117 35 1 4.6145 -1.0313 -2.0862 36 1 5.5805 -1.5011 -4.1937 37 1 7.0705 -2.1507 -3.4695 38 1 6.3807 0.6989 -2.8800 39 1 6.9583 0.3126 -4.5215 40 1 10.2082 0.0526 -0.3089 41 1 10.4318 -0.9126 -1.7877 42 1 10.1373 1.7964 -2.5296 43 1 12.3431 4.0319 -3.6541 44 1 8.1209 -1.0257 0.1914 45 1 8.1068 -2.0352 -1.2743 46 1 3.9900 -2.2281 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201774231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:08 Heat of formation + Delta-G solvation = -54.050382 kcal Electronic energy + Delta-G solvation = -29673.988676 eV Core-core repulsion = 25565.191141 eV Total energy + Delta-G solvation = -4108.797534 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.45990 -40.13921 -38.35157 -37.72421 -35.54780 -34.46067 -33.75990 -32.74276 -31.75684 -30.78161 -29.22094 -28.10025 -26.55242 -25.26534 -24.17629 -22.82625 -22.36838 -21.63962 -20.82288 -20.32094 -18.37417 -17.99388 -17.05468 -16.92230 -16.43876 -16.34850 -16.20442 -15.64723 -15.42612 -14.95372 -14.51499 -14.45400 -14.11434 -13.88812 -13.67693 -13.54917 -13.34977 -13.29346 -13.15422 -12.95607 -12.91455 -12.68868 -12.48691 -12.16682 -11.90890 -11.61114 -11.30117 -10.85087 -10.70307 -10.67004 -10.19763 -10.07124 -9.89375 -9.81414 -9.56695 -9.43329 -9.27577 -8.71251 -8.45281 -8.37288 -6.72446 -5.57432 -2.85533 0.60817 0.94317 2.20719 2.64804 2.97798 3.48850 3.56586 3.59610 3.61623 3.78252 4.07416 4.08054 4.21809 4.43430 4.62103 4.68805 4.72120 4.73810 4.78208 4.85210 4.98629 5.14263 5.26090 5.33847 5.38613 5.42797 5.49418 5.51975 5.58315 5.72300 5.74955 5.92589 5.99017 6.08073 6.12193 6.23371 6.28362 6.38541 6.47142 6.63050 6.79875 6.92454 7.30178 7.84444 7.90986 8.14336 8.24840 8.60659 9.71652 10.31423 10.67351 11.65528 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002644 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.010716 B =10588.896362 C =10998.564420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.155 3.845 3 C -0.268 4.268 4 C 0.408 3.592 5 O -0.486 6.486 6 C -0.289 4.289 7 C 0.573 3.427 8 O -0.508 6.508 9 N -0.610 5.610 10 C 0.106 3.894 11 C -0.165 4.165 12 C 0.072 3.928 13 O -0.368 6.368 14 C 0.086 3.914 15 H 0.056 0.944 16 C 0.167 3.833 17 N -0.726 5.726 18 C -0.236 4.236 19 H 0.069 0.931 20 C -0.016 4.016 21 N -0.932 5.932 22 Si 0.908 3.092 23 H -0.287 1.287 24 H -0.292 1.292 25 H -0.287 1.287 26 C 0.085 3.915 27 C 0.164 3.836 28 N -0.580 5.580 29 H 0.420 0.580 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.153 0.847 34 H 0.063 0.937 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.049 0.951 39 H 0.088 0.912 40 H 0.034 0.966 41 H 0.026 0.974 42 H 0.387 0.613 43 H 0.254 0.746 44 H 0.092 0.908 45 H 0.083 0.917 46 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.286 -17.766 3.728 36.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 C -0.292 4.292 4 C 0.294 3.706 5 O -0.367 6.367 6 C -0.300 4.300 7 C 0.360 3.640 8 O -0.382 6.382 9 N -0.344 5.344 10 C -0.017 4.017 11 C -0.203 4.203 12 C -0.005 4.005 13 O -0.286 6.286 14 C 0.026 3.974 15 H 0.074 0.926 16 C 0.039 3.961 17 N -0.370 5.370 18 C -0.367 4.367 19 H 0.087 0.913 20 C -0.212 4.212 21 N -0.581 5.581 22 Si 0.739 3.261 23 H -0.214 1.214 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.039 4.039 27 C 0.034 3.966 28 N -0.186 5.186 29 H 0.257 0.743 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.097 0.903 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.067 0.933 39 H 0.106 0.894 40 H 0.052 0.948 41 H 0.044 0.956 42 H 0.221 0.779 43 H 0.064 0.936 44 H 0.111 0.889 45 H 0.101 0.899 46 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -30.269 -16.892 4.112 34.907 hybrid contribution 0.246 -0.142 0.005 0.284 sum -30.023 -17.034 4.117 34.763 Atomic orbital electron populations 1.21097 0.87835 1.04916 1.04396 1.20270 0.94799 0.85470 0.94686 1.22232 0.96079 0.97467 1.13419 1.18196 0.88462 0.87689 0.76281 1.90863 1.70005 1.33380 1.42442 1.22441 0.94599 0.95437 1.17555 1.17669 0.86103 0.78739 0.81501 1.90855 1.67066 1.41937 1.38297 1.47869 1.07838 1.52415 1.26276 1.22101 0.94932 0.97450 0.87218 1.22557 1.01050 1.00666 0.96033 1.22091 0.83954 0.94826 0.99591 1.86416 1.26381 1.91847 1.23971 1.22289 0.97226 0.96597 0.81268 0.92631 1.20600 0.86961 0.92525 0.96015 1.42233 1.05221 1.26923 1.62626 1.19186 0.83788 1.06782 1.26968 0.91264 1.24740 0.97790 0.97819 1.00830 1.69674 1.34225 1.15240 1.38981 0.86255 0.85580 0.76916 0.77358 1.21382 1.21788 1.21339 1.22409 0.78333 1.00161 1.02957 1.22065 0.82453 0.99789 0.92298 1.40667 1.05791 1.08918 1.63269 0.74343 0.89165 0.90493 0.88706 0.82953 0.91831 0.90260 0.89934 0.89942 0.93289 0.89365 0.94814 0.95608 0.77893 0.93598 0.88944 0.89856 0.81219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.08 10.03 36.00 0.36 0.28 16 2 C 0.15 0.69 6.79 -82.13 -0.56 0.14 16 3 C -0.27 -2.45 9.57 -39.47 -0.38 -2.83 16 4 C 0.41 5.95 6.96 -34.68 -0.24 5.71 16 5 O -0.49 -9.95 17.42 4.84 0.08 -9.87 16 6 C -0.29 -3.52 4.61 -102.72 -0.47 -4.00 16 7 C 0.57 9.17 6.91 -12.58 -0.09 9.08 16 8 O -0.51 -10.81 16.44 5.26 0.09 -10.72 16 9 N -0.61 -8.19 2.18 -173.56 -0.38 -8.57 16 10 C 0.11 0.95 5.00 -3.00 -0.02 0.93 16 11 C -0.16 -1.68 5.79 -26.98 -0.16 -1.83 16 12 C 0.07 1.08 6.38 36.41 0.23 1.31 16 13 O -0.37 -7.14 9.38 -26.54 -0.25 -7.39 16 14 C 0.09 1.72 2.68 -25.78 -0.07 1.65 16 15 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 16 C 0.17 3.83 5.92 -4.04 -0.02 3.81 16 17 N -0.73 -20.71 5.54 -59.91 -0.33 -21.04 16 18 C -0.24 -7.18 9.99 -15.06 -0.15 -7.33 16 19 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.02 -0.50 5.50 -17.44 -0.10 -0.59 16 21 N -0.93 -30.45 13.06 55.49 0.72 -29.73 16 22 Si 0.91 23.86 29.55 -169.99 -5.02 18.84 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.68 7.11 56.52 0.40 -7.28 16 25 H -0.29 -7.40 7.11 56.52 0.40 -6.99 16 26 C 0.08 1.31 4.82 -3.83 -0.02 1.29 16 27 C 0.16 0.94 9.10 -16.54 -0.15 0.79 16 28 N -0.58 -1.58 5.16 -9.00 -0.05 -1.63 16 29 H 0.42 -0.65 8.70 -40.82 -0.35 -1.00 16 30 H 0.09 -0.02 8.14 -51.93 -0.42 -0.44 16 31 H 0.08 -0.09 8.12 -51.93 -0.42 -0.52 16 32 H 0.09 0.07 8.05 -51.93 -0.42 -0.35 16 33 H 0.15 1.24 8.06 -52.48 -0.42 0.81 16 34 H 0.06 0.37 8.04 -51.93 -0.42 -0.05 16 35 H 0.08 0.63 5.78 -51.92 -0.30 0.33 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.08 0.88 8.01 -51.93 -0.42 0.47 16 38 H 0.05 0.80 7.41 -51.93 -0.38 0.42 16 39 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.39 11.83 7.65 -40.82 -0.31 11.52 16 43 H 0.25 7.98 8.31 -40.82 -0.34 7.64 16 44 H 0.09 1.50 7.36 -51.93 -0.38 1.12 16 45 H 0.08 1.10 8.11 -51.93 -0.42 0.67 16 46 H 0.17 0.43 7.59 -52.48 -0.40 0.03 16 LS Contribution 377.96 15.07 5.70 5.70 Total: -1.00 -44.59 377.96 -7.99 -52.59 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.73 Total: 3.41 kcal Atomic # 6 Polarization: 10.24 SS G_CDS: -1.82 Total: 8.42 kcal Atomic # 7 Polarization: -60.93 SS G_CDS: -0.03 Total: -60.97 kcal Atomic # 8 Polarization: -27.91 SS G_CDS: -0.08 Total: -27.99 kcal Atomic # 14 Polarization: 23.86 SS G_CDS: -5.02 Total: 18.84 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -44.59 -7.99 -52.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.461 kcal (2) G-P(sol) polarization free energy of solvation -44.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds