Wall clock time and date at job start Tue Mar 31 2020 19:15:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.34864 * 119.10203 * 2 1 4 4 C 1.41663 * 119.34182 * 179.97438 * 3 2 1 5 5 O 1.22090 * 121.06828 * 180.02562 * 4 3 2 6 6 C 1.47096 * 117.86597 * 0.27210 * 4 3 2 7 7 C 1.47287 * 120.88845 * 179.72761 * 6 4 3 8 8 O 1.21623 * 119.99536 * 53.20377 * 7 6 4 9 9 N 1.34776 * 119.99966 * 233.21244 * 7 6 4 10 10 C 1.47497 * 118.76101 * 5.61628 * 9 7 6 11 11 C 1.53952 * 110.82145 * 138.25241 * 10 9 7 12 12 C 1.51531 * 109.72867 * 320.30770 * 11 10 9 13 13 O 1.42159 * 108.76513 * 91.29369 * 12 11 10 14 14 C 1.38016 * 119.43420 * 272.78417 * 13 12 11 15 15 H 1.09000 * 109.46929 * 303.42403 * 14 13 12 16 16 C 1.53002 * 109.46598 * 183.42931 * 14 13 12 17 17 N 1.46501 * 109.47089 * 64.98924 * 16 14 13 18 18 C 1.36935 * 120.00182 * 180.02562 * 17 16 14 19 19 H 1.08007 * 119.99735 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00120 * 180.02562 * 18 17 16 21 21 N 1.31614 * 120.00249 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00188 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.47107 * 59.99621 * 22 20 18 24 24 H 1.48496 * 109.47648 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47139 * 299.99940 * 22 20 18 26 26 C 1.45124 * 118.75409 * 185.88389 * 9 7 6 27 27 C 1.37993 * 118.23158 * 359.46905 * 6 4 3 28 28 N 1.34346 * 120.37379 * 0.52701 * 27 6 4 29 29 H 0.96993 * 118.80791 * 179.72061 * 28 27 6 30 30 H 1.08996 * 109.46985 * 90.00245 * 1 2 3 31 31 H 1.09001 * 109.47122 * 209.99733 * 1 2 3 32 32 H 1.08999 * 109.47377 * 330.00022 * 1 2 3 33 33 H 1.08003 * 120.32672 * 359.95640 * 3 2 1 34 34 H 1.08998 * 109.17342 * 258.77072 * 10 9 7 35 35 H 1.09009 * 109.16503 * 17.97377 * 10 9 7 36 36 H 1.08999 * 109.45946 * 200.17367 * 11 10 9 37 37 H 1.08994 * 109.29358 * 80.33592 * 11 10 9 38 38 H 1.09002 * 109.58764 * 331.51230 * 12 11 10 39 39 H 1.08992 * 109.58826 * 211.07702 * 12 11 10 40 40 H 1.09004 * 109.47138 * 184.98482 * 16 14 13 41 41 H 1.08994 * 109.47584 * 304.98846 * 16 14 13 42 42 H 0.97000 * 119.99830 * 359.97438 * 17 16 14 43 43 H 0.97006 * 120.00840 * 180.02562 * 21 20 18 44 44 H 1.09002 * 109.45916 * 29.31173 * 26 9 7 45 45 H 1.09002 * 109.46216 * 149.26985 * 26 9 7 46 46 H 1.08003 * 119.81363 * 180.21816 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1843 0.0006 5 8 4.2052 2.2327 0.0010 6 6 4.2725 -0.1132 -0.0051 7 6 5.7436 -0.1847 -0.0109 8 8 6.3848 0.4141 0.8316 9 7 6.3792 -0.9134 -0.9497 10 6 5.5847 -1.5253 -2.0314 11 6 6.3024 -1.3819 -3.3858 12 6 6.9457 -0.0133 -3.4815 13 8 8.2778 -0.0988 -2.9927 14 6 8.5168 0.0636 -1.6431 15 1 8.1238 1.0268 -1.3179 16 6 10.0236 0.0133 -1.3825 17 7 10.6698 1.1569 -2.0312 18 6 12.0257 1.3225 -1.9349 19 1 12.6187 0.6102 -1.3804 20 6 12.6379 2.4063 -2.5491 21 7 11.9153 3.2746 -3.2245 22 14 14.4875 2.6326 -2.4172 23 1 15.1735 1.4534 -3.0035 24 1 14.8904 3.8566 -3.1552 25 1 14.8690 2.7674 -0.9884 26 6 7.8187 -1.0712 -0.8549 27 6 3.5077 -1.2617 0.0007 28 7 2.1664 -1.1847 0.0005 29 1 1.6511 -2.0064 0.0005 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.6136 2.1083 -0.0007 34 1 5.4352 -2.5824 -1.8117 35 1 4.6145 -1.0313 -2.0862 36 1 5.5805 -1.5011 -4.1937 37 1 7.0705 -2.1507 -3.4695 38 1 6.3807 0.6989 -2.8800 39 1 6.9583 0.3126 -4.5215 40 1 10.2082 0.0526 -0.3089 41 1 10.4318 -0.9126 -1.7877 42 1 10.1373 1.7964 -2.5296 43 1 12.3431 4.0319 -3.6541 44 1 8.1209 -1.0257 0.1914 45 1 8.1068 -2.0352 -1.2743 46 1 3.9900 -2.2281 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201774231.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:07 Heat of formation + Delta-G solvation = -91.625034 kcal Electronic energy + Delta-G solvation = -29675.618035 eV Core-core repulsion = 25565.191141 eV Total energy + Delta-G solvation = -4110.426894 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.25378 -41.22137 -39.60006 -38.79681 -36.92599 -36.26805 -34.44904 -34.17305 -32.68275 -32.59760 -30.40127 -29.03190 -27.67836 -26.74092 -25.25477 -24.37498 -23.25298 -22.83591 -22.34143 -21.20688 -19.29443 -19.27521 -18.69254 -17.89256 -17.62490 -17.57109 -17.18943 -16.87540 -16.55946 -16.14870 -15.92661 -15.67008 -15.24979 -15.17047 -14.86508 -14.74352 -14.55130 -14.48458 -14.05702 -13.88206 -13.73254 -13.63359 -13.48322 -13.25841 -13.12991 -13.02508 -12.73204 -12.66159 -12.36650 -12.18619 -12.04293 -11.84494 -11.55276 -11.22465 -10.98641 -10.60474 -10.50305 -10.38342 -9.67546 -9.22069 -9.04841 -7.95206 -5.26631 -0.09093 0.30469 1.43686 1.50280 1.50509 1.56212 1.73398 2.02652 2.55151 2.61943 2.67318 3.34923 3.37428 3.46709 3.61028 3.64263 3.80852 3.96914 3.99687 4.00758 4.07125 4.19172 4.26964 4.35812 4.38171 4.44843 4.53605 4.65214 4.68597 4.75533 4.77449 4.81277 4.84051 4.85623 5.06232 5.09828 5.18295 5.21284 5.28629 5.44072 5.54636 5.67978 6.12948 6.23948 6.26390 6.68770 7.02587 7.14146 7.29147 8.03085 8.29034 9.29057 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.021500 B = 0.002644 C = 0.002545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.010716 B =10588.896362 C =10998.564420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.201 3.799 3 C -0.309 4.309 4 C 0.381 3.619 5 O -0.590 6.590 6 C -0.349 4.349 7 C 0.568 3.432 8 O -0.585 6.585 9 N -0.604 5.604 10 C 0.098 3.902 11 C -0.153 4.153 12 C 0.062 3.938 13 O -0.393 6.393 14 C 0.101 3.899 15 H -0.001 1.001 16 C 0.165 3.835 17 N -0.744 5.744 18 C -0.249 4.249 19 H 0.082 0.918 20 C -0.084 4.084 21 N -0.975 5.975 22 Si 0.986 3.014 23 H -0.270 1.270 24 H -0.294 1.294 25 H -0.277 1.277 26 C 0.099 3.901 27 C 0.227 3.773 28 N -0.544 5.544 29 H 0.453 0.547 30 H 0.112 0.888 31 H 0.113 0.887 32 H 0.094 0.906 33 H 0.149 0.851 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.122 0.878 37 H 0.087 0.913 38 H 0.020 0.980 39 H 0.093 0.907 40 H 0.033 0.967 41 H 0.043 0.957 42 H 0.370 0.630 43 H 0.251 0.749 44 H 0.078 0.922 45 H 0.121 0.879 46 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.657 -23.647 3.196 42.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.092 3.908 3 C -0.332 4.332 4 C 0.275 3.725 5 O -0.481 6.481 6 C -0.359 4.359 7 C 0.358 3.642 8 O -0.464 6.464 9 N -0.337 5.337 10 C -0.022 4.022 11 C -0.191 4.191 12 C -0.014 4.014 13 O -0.312 6.312 14 C 0.041 3.959 15 H 0.017 0.983 16 C 0.038 3.962 17 N -0.386 5.386 18 C -0.381 4.381 19 H 0.100 0.900 20 C -0.275 4.275 21 N -0.626 5.626 22 Si 0.814 3.186 23 H -0.196 1.196 24 H -0.220 1.220 25 H -0.203 1.203 26 C -0.026 4.026 27 C 0.093 3.907 28 N -0.151 5.151 29 H 0.297 0.703 30 H 0.130 0.870 31 H 0.132 0.868 32 H 0.113 0.887 33 H 0.167 0.833 34 H 0.140 0.860 35 H 0.111 0.889 36 H 0.140 0.860 37 H 0.106 0.894 38 H 0.038 0.962 39 H 0.111 0.889 40 H 0.051 0.949 41 H 0.061 0.939 42 H 0.201 0.799 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.139 0.861 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -33.753 -22.927 3.563 40.958 hybrid contribution 1.028 1.522 0.121 1.841 sum -32.726 -21.404 3.683 39.277 Atomic orbital electron populations 1.21312 0.83774 1.06793 1.06236 1.20722 0.96807 0.84232 0.89061 1.22025 0.93587 0.99848 1.17764 1.19085 0.90725 0.87652 0.74988 1.90803 1.72040 1.36341 1.48910 1.21938 0.92835 0.96665 1.24482 1.18354 0.87817 0.77375 0.80696 1.90794 1.69060 1.45000 1.41549 1.47970 1.07011 1.51878 1.26791 1.22566 0.94361 1.00426 0.84878 1.22491 1.01786 0.96564 0.98288 1.22387 0.82088 0.98035 0.98887 1.86326 1.29402 1.92030 1.23467 1.21909 0.95450 0.96097 0.82482 0.98290 1.20761 0.88955 0.91117 0.95385 1.42489 1.05009 1.28187 1.62902 1.19700 0.84801 1.07034 1.26547 0.90020 1.25776 1.03339 0.97586 1.00841 1.69883 1.36453 1.15907 1.40362 0.85031 0.78964 0.77006 0.77639 1.19611 1.22021 1.20276 1.22121 0.79691 0.99393 1.01358 1.22549 0.82993 0.99328 0.85862 1.40953 1.05182 1.10043 1.58922 0.70337 0.86980 0.86829 0.88702 0.83344 0.85993 0.88928 0.85992 0.89422 0.96157 0.88896 0.94925 0.93927 0.79916 0.94004 0.90407 0.86114 0.75994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 0.55 10.03 71.24 0.71 1.26 16 2 C 0.20 0.97 6.79 41.20 0.28 1.25 16 3 C -0.31 -5.78 9.57 22.34 0.21 -5.57 16 4 C 0.38 12.33 6.96 25.44 0.18 12.51 16 5 O -0.59 -28.36 17.42 -5.61 -0.10 -28.46 16 6 C -0.35 -8.54 4.61 -18.63 -0.09 -8.62 16 7 C 0.57 19.32 6.91 86.62 0.60 19.92 16 8 O -0.58 -27.90 16.44 -4.10 -0.07 -27.97 16 9 N -0.60 -16.01 2.18 -821.26 -1.79 -17.80 16 10 C 0.10 1.35 5.00 86.51 0.43 1.79 16 11 C -0.15 -2.62 5.79 30.43 0.18 -2.44 16 12 C 0.06 1.91 6.38 71.50 0.46 2.37 16 13 O -0.39 -16.05 9.38 -117.88 -1.11 -17.16 16 14 C 0.10 4.33 2.68 31.21 0.08 4.42 16 15 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 16 C 0.16 7.97 5.92 86.38 0.51 8.48 16 17 N -0.74 -44.98 5.54 -343.45 -1.90 -46.88 16 18 C -0.25 -15.66 9.99 84.03 0.84 -14.82 16 19 H 0.08 4.80 7.83 -2.91 -0.02 4.78 16 20 C -0.08 -5.34 5.50 84.86 0.47 -4.88 16 21 N -0.98 -66.59 13.06 21.65 0.28 -66.31 16 22 Si 0.99 50.25 29.55 68.60 2.03 52.27 16 23 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 24 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 25 H -0.28 -13.55 7.11 99.48 0.71 -12.85 16 26 C 0.10 3.10 4.82 87.25 0.42 3.52 16 27 C 0.23 1.47 9.10 84.25 0.77 2.23 16 28 N -0.54 0.54 5.16 -182.38 -0.94 -0.40 16 29 H 0.45 -5.48 8.70 -92.71 -0.81 -6.29 16 30 H 0.11 -0.75 8.14 -2.39 -0.02 -0.77 16 31 H 0.11 -1.18 8.12 -2.39 -0.02 -1.20 16 32 H 0.09 -0.25 8.05 -2.39 -0.02 -0.27 16 33 H 0.15 2.72 8.06 -2.91 -0.02 2.69 16 34 H 0.12 0.42 8.04 -2.39 -0.02 0.40 16 35 H 0.09 1.07 5.78 -2.38 -0.01 1.06 16 36 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.09 1.50 8.01 -2.39 -0.02 1.48 16 38 H 0.02 0.73 7.41 -2.39 -0.02 0.71 16 39 H 0.09 2.69 8.14 -2.39 -0.02 2.67 16 40 H 0.03 1.59 8.14 -2.38 -0.02 1.57 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.37 24.43 7.65 -92.71 -0.71 23.72 16 43 H 0.25 16.46 8.31 -92.70 -0.77 15.69 16 44 H 0.08 2.68 7.36 -2.39 -0.02 2.66 16 45 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 46 H 0.22 -0.72 7.59 -2.91 -0.02 -0.74 16 Total: -1.00 -118.56 377.96 1.96 -116.60 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: -0.50 Total: 14.68 kcal Atomic # 6 Polarization: 15.37 SS G_CDS: 6.05 Total: 21.42 kcal Atomic # 7 Polarization: -127.04 SS G_CDS: -4.35 Total: -131.40 kcal Atomic # 8 Polarization: -72.31 SS G_CDS: -1.27 Total: -73.58 kcal Atomic # 14 Polarization: 50.25 SS G_CDS: 2.03 Total: 52.27 kcal Total: -118.56 1.96 -116.60 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774231.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.980 kcal (2) G-P(sol) polarization free energy of solvation -118.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds