Wall clock time and date at job start Tue Mar 31 2020 19:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34870 * 119.10214 * 2 1 4 4 C 1.41668 * 119.34333 * 179.69303 * 3 2 1 5 5 O 1.22088 * 121.07089 * 180.31638 * 4 3 2 6 6 C 1.47102 * 117.85902 * 0.56544 * 4 3 2 7 7 C 1.47288 * 120.88160 * 179.75608 * 6 4 3 8 8 O 1.21618 * 120.00216 * 290.58531 * 7 6 4 9 9 N 1.34770 * 119.99809 * 110.30414 * 7 6 4 10 10 C 1.47510 * 118.75798 * 173.98583 * 9 7 6 11 11 C 1.53571 * 111.03082 * 221.60863 * 10 9 7 12 12 C 1.51530 * 109.58401 * 39.97626 * 11 10 9 13 13 O 1.42155 * 108.75832 * 268.60424 * 12 11 10 14 14 C 1.38012 * 119.44447 * 87.22878 * 13 12 11 15 15 H 1.08998 * 109.46993 * 56.56485 * 14 13 12 16 16 C 1.52992 * 109.47300 * 176.56919 * 14 13 12 17 17 N 1.46496 * 109.47220 * 299.99561 * 16 14 13 18 18 C 1.36939 * 120.00239 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00104 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99758 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00358 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99652 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46893 * 89.99638 * 22 20 18 24 24 H 1.48498 * 109.46828 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46876 * 329.99939 * 22 20 18 26 26 C 1.45119 * 118.76063 * 353.72101 * 9 7 6 27 27 C 1.37986 * 118.23737 * 359.48634 * 6 4 3 28 28 N 1.34352 * 120.37408 * 0.22340 * 27 6 4 29 29 H 0.96990 * 118.80513 * 180.02562 * 28 27 6 30 30 H 1.08998 * 109.47126 * 269.97890 * 1 2 3 31 31 H 1.09002 * 109.47165 * 29.97552 * 1 2 3 32 32 H 1.09002 * 109.47129 * 149.97241 * 1 2 3 33 33 H 1.07999 * 120.32653 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.16942 * 342.00812 * 10 9 7 35 35 H 1.09001 * 109.16994 * 101.20793 * 10 9 7 36 36 H 1.08998 * 109.45594 * 160.01481 * 11 10 9 37 37 H 1.09001 * 109.45349 * 279.93910 * 11 10 9 38 38 H 1.09002 * 109.58880 * 28.38163 * 12 11 10 39 39 H 1.09000 * 109.59348 * 148.67495 * 12 11 10 40 40 H 1.08998 * 109.47451 * 59.99847 * 16 14 13 41 41 H 1.08999 * 109.47124 * 179.97438 * 16 14 13 42 42 H 0.97007 * 119.99871 * 0.02562 * 17 16 14 43 43 H 0.96999 * 119.99968 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.46188 * 210.75642 * 26 9 7 45 45 H 1.09004 * 109.45955 * 330.71288 * 26 9 7 46 46 H 1.08004 * 119.81637 * 180.25357 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 0.0066 5 8 4.2052 2.2328 0.0126 6 6 4.2724 -0.1132 0.0004 7 6 5.7436 -0.1846 0.0013 8 8 6.3698 0.1610 -0.9823 9 7 6.3960 -0.6276 1.0942 10 6 7.8573 -0.8155 1.0209 11 6 8.2825 -2.1109 1.7276 12 6 7.2797 -3.2064 1.4267 13 8 6.2801 -3.2013 2.4374 14 6 5.1790 -2.3809 2.2986 15 1 4.6748 -2.6055 1.3588 16 6 4.2160 -2.6183 3.4635 17 7 3.7848 -4.0183 3.4631 18 6 2.9145 -4.4670 4.4205 19 1 2.5464 -3.7889 5.1760 20 6 2.5064 -5.7938 4.4203 21 7 2.9562 -6.6207 3.5004 22 14 1.3186 -6.4057 5.7259 23 1 -0.0760 -6.2355 5.2451 24 1 1.5773 -7.8429 5.9959 25 1 1.5105 -5.6251 6.9746 26 6 5.6353 -0.8961 2.3005 27 6 3.5076 -1.2617 -0.0006 28 7 2.1663 -1.1847 -0.0005 29 1 1.6510 -2.0064 -0.0008 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5143 33 1 1.6136 2.1083 0.0004 34 1 8.1600 -0.8626 -0.0252 35 1 8.3514 0.0310 1.4977 36 1 9.2674 -2.4125 1.3712 37 1 8.3226 -1.9411 2.8036 38 1 6.8187 -3.0233 0.4560 39 1 7.7855 -4.1718 1.4148 40 1 4.7202 -2.3937 4.4034 41 1 3.3466 -1.9700 3.3541 42 1 4.1158 -4.6276 2.7847 43 1 2.6707 -7.5477 3.5001 44 1 6.2606 -0.7086 3.1735 45 1 4.7627 -0.2437 2.3323 46 1 3.9899 -2.2281 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001201774232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:12 Heat of formation + Delta-G solvation = -56.066744 kcal Electronic energy + Delta-G solvation = -30556.755821 eV Core-core repulsion = 26447.870850 eV Total energy + Delta-G solvation = -4108.884971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.31555 -40.08558 -38.48734 -37.61253 -35.30155 -34.88299 -33.71005 -32.92088 -31.47551 -30.93560 -28.81867 -28.37493 -26.63092 -25.20386 -24.14814 -23.01296 -22.34489 -21.68475 -21.06591 -19.95180 -18.38184 -17.71595 -17.35177 -16.98845 -16.57646 -16.43764 -16.07257 -15.55182 -15.28360 -14.98596 -14.56998 -14.45720 -14.12185 -13.75938 -13.51358 -13.48163 -13.35792 -13.16807 -13.03871 -12.96544 -12.84109 -12.57024 -12.45483 -12.31506 -12.09515 -11.81101 -11.28400 -11.03255 -10.89978 -10.83043 -10.40085 -10.16899 -9.98604 -9.81707 -9.62869 -9.48426 -9.26041 -8.98077 -8.52685 -8.16958 -7.01505 -5.84926 -3.13829 0.88812 1.20872 2.45827 2.69513 3.00239 3.35448 3.42600 3.43898 3.60955 3.85410 4.08659 4.31428 4.39993 4.51019 4.69363 4.76532 4.85460 4.91688 5.03545 5.07237 5.10660 5.15270 5.23585 5.32941 5.41809 5.44080 5.48510 5.56445 5.62321 5.68809 5.75198 5.77308 5.86992 5.98614 6.08863 6.14258 6.17388 6.42355 6.51926 6.58457 6.62060 6.70010 7.33200 7.60884 7.88060 8.03755 8.20154 8.33190 9.45450 10.01634 10.37857 11.37469 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004545 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.711540 B = 6158.512609 C = 8390.440818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.168 3.832 3 C -0.280 4.280 4 C 0.417 3.583 5 O -0.511 6.511 6 C -0.306 4.306 7 C 0.588 3.412 8 O -0.530 6.530 9 N -0.606 5.606 10 C 0.112 3.888 11 C -0.166 4.166 12 C 0.074 3.926 13 O -0.364 6.364 14 C 0.082 3.918 15 H 0.045 0.955 16 C 0.164 3.836 17 N -0.724 5.724 18 C -0.241 4.241 19 H 0.070 0.930 20 C -0.011 4.011 21 N -0.931 5.931 22 Si 0.905 3.095 23 H -0.291 1.291 24 H -0.291 1.291 25 H -0.282 1.282 26 C 0.075 3.925 27 C 0.178 3.822 28 N -0.570 5.570 29 H 0.427 0.573 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.089 0.911 35 H 0.065 0.935 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.046 0.954 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.387 0.613 43 H 0.255 0.745 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.339 9.894 -7.667 12.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.060 3.940 3 C -0.304 4.304 4 C 0.306 3.694 5 O -0.396 6.396 6 C -0.317 4.317 7 C 0.376 3.624 8 O -0.406 6.406 9 N -0.339 5.339 10 C -0.010 4.010 11 C -0.204 4.204 12 C -0.003 4.003 13 O -0.282 6.282 14 C 0.022 3.978 15 H 0.063 0.937 16 C 0.035 3.965 17 N -0.369 5.369 18 C -0.372 4.372 19 H 0.088 0.912 20 C -0.207 4.207 21 N -0.579 5.579 22 Si 0.736 3.264 23 H -0.218 1.218 24 H -0.217 1.217 25 H -0.207 1.207 26 C -0.049 4.049 27 C 0.047 3.953 28 N -0.175 5.175 29 H 0.264 0.736 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.098 0.902 33 H 0.169 0.831 34 H 0.108 0.892 35 H 0.083 0.917 36 H 0.104 0.896 37 H 0.100 0.900 38 H 0.065 0.935 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.221 0.779 43 H 0.065 0.935 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 0.264 10.553 -7.881 13.173 hybrid contribution -0.737 -0.908 0.416 1.241 sum -0.473 9.645 -7.465 12.206 Atomic orbital electron populations 1.21133 0.87768 1.04850 1.04766 1.20354 0.94987 0.85462 0.93228 1.22107 0.95915 0.97330 1.15054 1.18090 0.88494 0.87282 0.75580 1.90772 1.70200 1.33548 1.45053 1.22179 0.94228 0.95503 1.19802 1.17649 0.86182 0.76158 0.82442 1.90755 1.68416 1.47105 1.34283 1.47842 1.07830 1.66149 1.12055 1.21810 0.79129 0.97443 1.02578 1.22502 1.00209 0.95241 1.02434 1.22150 0.88730 0.98512 0.90904 1.86454 1.31572 1.63711 1.46453 1.22669 0.87242 0.88258 0.99660 0.93718 1.20624 0.92659 0.89056 0.94115 1.42206 1.54376 1.04720 1.35575 1.19205 1.18138 0.93705 1.06117 0.91236 1.24716 1.00874 0.96203 0.98903 1.69662 1.47892 1.04648 1.35730 0.86222 0.80714 0.78093 0.81333 1.21805 1.21745 1.20733 1.22639 0.97031 0.97812 0.87429 1.22223 0.82683 0.99797 0.90628 1.40794 1.05914 1.09354 1.61464 0.73566 0.88792 0.88828 0.90229 0.83080 0.89235 0.91658 0.89641 0.90037 0.93531 0.89059 0.95249 0.95175 0.77906 0.93512 0.89253 0.89562 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.62 10.03 36.00 0.36 -0.26 16 2 C 0.17 1.43 6.79 -82.13 -0.56 0.87 16 3 C -0.28 -3.23 9.57 -39.47 -0.38 -3.61 16 4 C 0.42 6.65 6.97 -34.68 -0.24 6.41 16 5 O -0.51 -10.32 17.55 4.84 0.08 -10.24 16 6 C -0.31 -4.48 4.04 -102.72 -0.42 -4.89 16 7 C 0.59 9.70 6.81 -12.58 -0.09 9.62 16 8 O -0.53 -10.46 16.46 5.26 0.09 -10.37 16 9 N -0.61 -8.59 2.18 -173.45 -0.38 -8.97 16 10 C 0.11 1.39 6.11 -3.19 -0.02 1.37 16 11 C -0.17 -1.81 5.79 -27.18 -0.16 -1.97 16 12 C 0.07 0.95 6.37 36.41 0.23 1.19 16 13 O -0.36 -5.93 9.18 -26.53 -0.24 -6.18 16 14 C 0.08 1.23 2.41 -25.50 -0.06 1.17 16 15 H 0.05 0.64 4.39 -51.93 -0.23 0.42 16 16 C 0.16 2.99 5.95 -4.05 -0.02 2.96 16 17 N -0.72 -16.87 5.49 -59.92 -0.33 -17.20 16 18 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 19 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 20 C -0.01 -0.29 5.50 -17.43 -0.10 -0.39 16 21 N -0.93 -26.63 13.06 55.49 0.72 -25.90 16 22 Si 0.91 21.23 29.55 -169.99 -5.02 16.21 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 26 C 0.08 1.02 4.56 -3.55 -0.02 1.01 16 27 C 0.18 1.97 9.23 -16.54 -0.15 1.82 16 28 N -0.57 -4.82 5.16 -9.00 -0.05 -4.87 16 29 H 0.43 2.54 8.70 -40.82 -0.35 2.18 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.36 8.05 -51.93 -0.42 -0.06 16 32 H 0.08 0.27 8.12 -51.93 -0.42 -0.15 16 33 H 0.15 1.51 8.06 -52.49 -0.42 1.09 16 34 H 0.09 1.16 7.08 -51.93 -0.37 0.79 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.08 0.93 8.01 -51.93 -0.42 0.52 16 38 H 0.05 0.60 7.40 -51.93 -0.38 0.22 16 39 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 40 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.39 9.65 7.53 -40.82 -0.31 9.35 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 44 H 0.09 1.17 8.11 -51.93 -0.42 0.74 16 45 H 0.09 1.17 6.85 -51.93 -0.36 0.82 16 46 H 0.17 1.75 5.85 -52.48 -0.31 1.45 16 LS Contribution 373.21 15.07 5.62 5.62 Total: -1.00 -37.18 373.21 -7.75 -44.93 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.49 Total: 8.09 kcal Atomic # 6 Polarization: 10.63 SS G_CDS: -1.76 Total: 8.87 kcal Atomic # 7 Polarization: -56.91 SS G_CDS: -0.03 Total: -56.94 kcal Atomic # 8 Polarization: -26.72 SS G_CDS: -0.07 Total: -26.79 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.18 -7.75 -44.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.133 kcal (2) G-P(sol) polarization free energy of solvation -37.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds