Wall clock time and date at job start Tue Mar 31 2020 19:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.34870 * 119.10214 * 2 1 4 4 C 1.41668 * 119.34333 * 179.69303 * 3 2 1 5 5 O 1.22088 * 121.07089 * 180.31638 * 4 3 2 6 6 C 1.47102 * 117.85902 * 0.56544 * 4 3 2 7 7 C 1.47288 * 120.88160 * 179.75608 * 6 4 3 8 8 O 1.21618 * 120.00216 * 290.58531 * 7 6 4 9 9 N 1.34770 * 119.99809 * 110.30414 * 7 6 4 10 10 C 1.47510 * 118.75798 * 173.98583 * 9 7 6 11 11 C 1.53571 * 111.03082 * 221.60863 * 10 9 7 12 12 C 1.51530 * 109.58401 * 39.97626 * 11 10 9 13 13 O 1.42155 * 108.75832 * 268.60424 * 12 11 10 14 14 C 1.38012 * 119.44447 * 87.22878 * 13 12 11 15 15 H 1.08998 * 109.46993 * 56.56485 * 14 13 12 16 16 C 1.52992 * 109.47300 * 176.56919 * 14 13 12 17 17 N 1.46496 * 109.47220 * 299.99561 * 16 14 13 18 18 C 1.36939 * 120.00239 * 180.02562 * 17 16 14 19 19 H 1.07994 * 120.00104 * 359.97438 * 18 17 16 20 20 C 1.38816 * 119.99758 * 180.02562 * 18 17 16 21 21 N 1.31616 * 120.00358 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99652 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.46893 * 89.99638 * 22 20 18 24 24 H 1.48498 * 109.46828 * 210.00147 * 22 20 18 25 25 H 1.48505 * 109.46876 * 329.99939 * 22 20 18 26 26 C 1.45119 * 118.76063 * 353.72101 * 9 7 6 27 27 C 1.37986 * 118.23737 * 359.48634 * 6 4 3 28 28 N 1.34352 * 120.37408 * 0.22340 * 27 6 4 29 29 H 0.96990 * 118.80513 * 180.02562 * 28 27 6 30 30 H 1.08998 * 109.47126 * 269.97890 * 1 2 3 31 31 H 1.09002 * 109.47165 * 29.97552 * 1 2 3 32 32 H 1.09002 * 109.47129 * 149.97241 * 1 2 3 33 33 H 1.07999 * 120.32653 * 0.02562 * 3 2 1 34 34 H 1.09004 * 109.16942 * 342.00812 * 10 9 7 35 35 H 1.09001 * 109.16994 * 101.20793 * 10 9 7 36 36 H 1.08998 * 109.45594 * 160.01481 * 11 10 9 37 37 H 1.09001 * 109.45349 * 279.93910 * 11 10 9 38 38 H 1.09002 * 109.58880 * 28.38163 * 12 11 10 39 39 H 1.09000 * 109.59348 * 148.67495 * 12 11 10 40 40 H 1.08998 * 109.47451 * 59.99847 * 16 14 13 41 41 H 1.08999 * 109.47124 * 179.97438 * 16 14 13 42 42 H 0.97007 * 119.99871 * 0.02562 * 17 16 14 43 43 H 0.96999 * 119.99968 * 180.02562 * 21 20 18 44 44 H 1.09004 * 109.46188 * 210.75642 * 26 9 7 45 45 H 1.09004 * 109.45955 * 330.71288 * 26 9 7 46 46 H 1.08004 * 119.81637 * 180.25357 * 27 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1629 1.1784 0.0000 4 6 3.5795 1.1844 0.0066 5 8 4.2052 2.2328 0.0126 6 6 4.2724 -0.1132 0.0004 7 6 5.7436 -0.1846 0.0013 8 8 6.3698 0.1610 -0.9823 9 7 6.3960 -0.6276 1.0942 10 6 7.8573 -0.8155 1.0209 11 6 8.2825 -2.1109 1.7276 12 6 7.2797 -3.2064 1.4267 13 8 6.2801 -3.2013 2.4374 14 6 5.1790 -2.3809 2.2986 15 1 4.6748 -2.6055 1.3588 16 6 4.2160 -2.6183 3.4635 17 7 3.7848 -4.0183 3.4631 18 6 2.9145 -4.4670 4.4205 19 1 2.5464 -3.7889 5.1760 20 6 2.5064 -5.7938 4.4203 21 7 2.9562 -6.6207 3.5004 22 14 1.3186 -6.4057 5.7259 23 1 -0.0760 -6.2355 5.2451 24 1 1.5773 -7.8429 5.9959 25 1 1.5105 -5.6251 6.9746 26 6 5.6353 -0.8961 2.3005 27 6 3.5076 -1.2617 -0.0006 28 7 2.1663 -1.1847 -0.0005 29 1 1.6510 -2.0064 -0.0008 30 1 -0.3633 -0.0004 1.0276 31 1 -0.3633 0.8902 -0.5135 32 1 -0.3633 -0.8897 -0.5143 33 1 1.6136 2.1083 0.0004 34 1 8.1600 -0.8626 -0.0252 35 1 8.3514 0.0310 1.4977 36 1 9.2674 -2.4125 1.3712 37 1 8.3226 -1.9411 2.8036 38 1 6.8187 -3.0233 0.4560 39 1 7.7855 -4.1718 1.4148 40 1 4.7202 -2.3937 4.4034 41 1 3.3466 -1.9700 3.3541 42 1 4.1158 -4.6276 2.7847 43 1 2.6707 -7.5477 3.5001 44 1 6.2606 -0.7086 3.1735 45 1 4.7627 -0.2437 2.3323 46 1 3.9899 -2.2281 -0.0010 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201774232.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:11 Heat of formation + Delta-G solvation = -83.006160 kcal Electronic energy + Delta-G solvation = -30557.924002 eV Core-core repulsion = 26447.870850 eV Total energy + Delta-G solvation = -4110.053151 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.35309 -41.16007 -39.71788 -38.78419 -36.71551 -36.27663 -34.85463 -33.98750 -32.89094 -32.24199 -30.22238 -29.12207 -27.78551 -26.66442 -25.16612 -24.56166 -23.44581 -22.77457 -22.27330 -20.99333 -19.43483 -19.19111 -18.74990 -18.15162 -17.71950 -17.50352 -17.18770 -16.76379 -16.54860 -16.18221 -15.97336 -15.69398 -15.20778 -15.07488 -14.79084 -14.72806 -14.55361 -14.48709 -14.07152 -13.87772 -13.69302 -13.62842 -13.44698 -13.31370 -13.17697 -13.06193 -12.76277 -12.68431 -12.37031 -12.11635 -11.92719 -11.77451 -11.53699 -11.24452 -10.91598 -10.66481 -10.52574 -10.35639 -9.72448 -9.22574 -8.93329 -7.88423 -5.16173 -0.08197 0.26964 1.35266 1.51998 1.54692 1.61860 1.69385 1.94688 2.55378 2.60843 2.70183 3.26496 3.30274 3.46463 3.58020 3.61802 3.80416 3.89822 3.94158 4.02175 4.06338 4.15363 4.28086 4.31844 4.41288 4.44437 4.49433 4.66068 4.71406 4.73922 4.78963 4.81540 4.81638 4.89815 5.06494 5.11563 5.17245 5.18354 5.24793 5.43559 5.56437 5.69421 5.98127 6.15479 6.32354 6.72311 6.93535 6.99602 7.41168 8.14713 8.40153 9.34499 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.004545 C = 0.003336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.711540 B = 6158.512609 C = 8390.440818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.196 3.804 3 C -0.303 4.303 4 C 0.398 3.602 5 O -0.580 6.580 6 C -0.339 4.339 7 C 0.583 3.417 8 O -0.574 6.574 9 N -0.601 5.601 10 C 0.107 3.893 11 C -0.152 4.152 12 C 0.070 3.930 13 O -0.390 6.390 14 C 0.094 3.906 15 H 0.053 0.947 16 C 0.164 3.836 17 N -0.733 5.733 18 C -0.239 4.239 19 H 0.075 0.925 20 C -0.067 4.067 21 N -0.965 5.965 22 Si 0.965 3.035 23 H -0.283 1.283 24 H -0.302 1.302 25 H -0.274 1.274 26 C 0.085 3.915 27 C 0.203 3.797 28 N -0.551 5.551 29 H 0.444 0.556 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.163 0.837 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.113 0.887 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.102 0.898 40 H 0.022 0.978 41 H 0.048 0.952 42 H 0.377 0.623 43 H 0.250 0.750 44 H 0.097 0.903 45 H 0.087 0.913 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.136 9.152 -7.062 11.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 C -0.326 4.326 4 C 0.293 3.707 5 O -0.470 6.470 6 C -0.350 4.350 7 C 0.372 3.628 8 O -0.453 6.453 9 N -0.332 5.332 10 C -0.014 4.014 11 C -0.190 4.190 12 C -0.006 4.006 13 O -0.309 6.309 14 C 0.034 3.966 15 H 0.071 0.929 16 C 0.037 3.963 17 N -0.375 5.375 18 C -0.371 4.371 19 H 0.093 0.907 20 C -0.260 4.260 21 N -0.616 5.616 22 Si 0.795 3.205 23 H -0.210 1.210 24 H -0.229 1.229 25 H -0.200 1.200 26 C -0.040 4.040 27 C 0.069 3.931 28 N -0.157 5.157 29 H 0.286 0.714 30 H 0.125 0.875 31 H 0.127 0.873 32 H 0.121 0.879 33 H 0.181 0.819 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.132 0.868 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.120 0.880 40 H 0.040 0.960 41 H 0.066 0.934 42 H 0.209 0.791 43 H 0.058 0.942 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -1.572 9.804 -7.242 12.289 hybrid contribution -0.214 -0.739 0.234 0.804 sum -1.787 9.065 -7.008 11.596 Atomic orbital electron populations 1.21323 0.84125 1.06823 1.06061 1.20861 0.96880 0.84203 0.89395 1.22070 0.93924 0.99274 1.17310 1.18692 0.90290 0.86886 0.74854 1.90727 1.71601 1.35321 1.49358 1.22024 0.93611 0.96237 1.23117 1.18020 0.87086 0.75450 0.82228 1.90714 1.69512 1.49230 1.35888 1.47912 1.08577 1.65110 1.11601 1.21967 0.78191 0.98700 1.02517 1.22413 1.00902 0.93546 1.02134 1.22329 0.88425 0.99820 0.90049 1.86400 1.32306 1.64224 1.47924 1.22458 0.86777 0.88785 0.98576 0.92919 1.20740 0.93845 0.86680 0.95082 1.42324 1.54003 1.06483 1.34732 1.19567 1.17562 0.93805 1.06162 0.90689 1.25409 1.02989 0.96629 1.00961 1.69803 1.49640 1.04559 1.37574 0.85266 0.79091 0.76765 0.79361 1.20996 1.22870 1.19965 1.22539 0.97260 0.96816 0.87353 1.22277 0.83588 0.99085 0.88171 1.41011 1.05203 1.10509 1.58935 0.71432 0.87499 0.87310 0.87890 0.81947 0.89990 0.90877 0.86840 0.90159 0.93738 0.88038 0.95974 0.93403 0.79072 0.94160 0.88469 0.89483 0.79762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.67 10.03 71.23 0.71 0.04 16 2 C 0.20 2.78 6.79 41.20 0.28 3.06 16 3 C -0.30 -6.75 9.57 22.34 0.21 -6.54 16 4 C 0.40 13.14 6.97 25.45 0.18 13.32 16 5 O -0.58 -25.00 17.55 -5.60 -0.10 -25.10 16 6 C -0.34 -10.00 4.04 -18.63 -0.08 -10.07 16 7 C 0.58 19.77 6.81 86.62 0.59 20.36 16 8 O -0.57 -23.74 16.46 -4.09 -0.07 -23.81 16 9 N -0.60 -16.99 2.18 -820.92 -1.79 -18.78 16 10 C 0.11 2.61 6.11 86.38 0.53 3.14 16 11 C -0.15 -3.07 5.79 30.30 0.18 -2.90 16 12 C 0.07 1.71 6.37 71.50 0.46 2.17 16 13 O -0.39 -12.24 9.18 -117.83 -1.08 -13.32 16 14 C 0.09 2.71 2.41 31.39 0.08 2.78 16 15 H 0.05 1.43 4.39 -2.39 -0.01 1.42 16 16 C 0.16 5.69 5.95 86.38 0.51 6.20 16 17 N -0.73 -33.14 5.49 -343.48 -1.89 -35.03 16 18 C -0.24 -12.12 9.99 84.03 0.84 -11.28 16 19 H 0.08 3.65 7.83 -2.91 -0.02 3.63 16 20 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 21 N -0.97 -54.83 13.06 21.65 0.28 -54.55 16 22 Si 0.97 42.80 29.55 68.60 2.03 44.83 16 23 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 24 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 25 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 26 C 0.08 2.23 4.56 87.44 0.40 2.63 16 27 C 0.20 4.18 9.23 84.25 0.78 4.96 16 28 N -0.55 -7.68 5.16 -182.38 -0.94 -8.62 16 29 H 0.44 3.47 8.70 -92.72 -0.81 2.66 16 30 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.11 0.37 8.05 -2.39 -0.02 0.35 16 32 H 0.10 0.16 8.12 -2.39 -0.02 0.14 16 33 H 0.16 3.14 8.06 -2.91 -0.02 3.12 16 34 H 0.08 2.14 7.08 -2.38 -0.02 2.13 16 35 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.11 1.69 8.14 -2.39 -0.02 1.68 16 37 H 0.08 1.69 8.01 -2.39 -0.02 1.67 16 38 H 0.04 1.11 7.40 -2.39 -0.02 1.09 16 39 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 40 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.38 18.50 7.53 -92.70 -0.70 17.80 16 43 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 44 H 0.10 2.42 8.11 -2.39 -0.02 2.40 16 45 H 0.09 2.31 6.85 -2.39 -0.02 2.29 16 46 H 0.19 3.39 5.85 -2.91 -0.02 3.38 16 Total: -1.00 -83.64 373.21 2.11 -81.53 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: -0.47 Total: 28.07 kcal Atomic # 6 Polarization: 18.63 SS G_CDS: 6.13 Total: 24.76 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -4.33 Total: -116.98 kcal Atomic # 8 Polarization: -60.98 SS G_CDS: -1.25 Total: -62.22 kcal Atomic # 14 Polarization: 42.80 SS G_CDS: 2.03 Total: 44.83 kcal Total: -83.64 2.11 -81.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201774232.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.473 kcal (2) G-P(sol) polarization free energy of solvation -83.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds