Wall clock time and date at job start Tue Mar 31 2020 19:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35274 * 126.70727 * 2 1 4 4 C 1.41924 * 103.95926 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.88042 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00298 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47408 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00586 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00691 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.87715 * 26.83668 * 10 9 7 12 12 C 1.53947 * 113.66195 * 255.49633 * 10 9 7 13 13 C 1.53953 * 87.29422 * 220.78978 * 12 10 9 14 14 H 1.09007 * 113.66059 * 270.17347 * 13 12 10 15 15 N 1.46490 * 113.66579 * 139.20604 * 13 12 10 16 16 C 1.36935 * 120.00121 * 106.00898 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.52915 * 86.88217 * 24.68527 * 13 12 10 25 25 C 1.52911 * 121.14042 * 209.42362 * 24 13 12 26 26 C 1.53952 * 86.77817 * 209.38241 * 25 24 13 27 27 C 1.52908 * 121.13264 * 100.86109 * 24 13 12 28 28 N 1.30615 * 106.24149 * 0.23898 * 4 3 2 29 29 O 1.20913 * 111.49825 * 359.57679 * 28 4 3 30 30 H 1.09010 * 109.46584 * 90.00188 * 1 2 3 31 31 H 1.08998 * 109.47000 * 209.99659 * 1 2 3 32 32 H 1.08994 * 109.47295 * 330.00271 * 1 2 3 33 33 H 1.08005 * 128.01861 * 0.04053 * 3 2 1 34 34 H 1.08999 * 109.47283 * 59.99738 * 6 5 4 35 35 H 1.09003 * 109.47058 * 299.99872 * 6 5 4 36 36 H 0.97007 * 119.99900 * 359.97438 * 9 7 6 37 37 H 1.09000 * 113.57953 * 106.18891 * 12 10 9 38 38 H 1.08998 * 113.58352 * 335.39210 * 12 10 9 39 39 H 0.97000 * 120.00577 * 286.01497 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.08997 * 113.65893 * 323.85195 * 25 24 13 42 42 H 1.08998 * 113.65925 * 94.91000 * 25 24 13 43 43 H 1.09003 * 113.57773 * 270.13122 * 26 25 24 44 44 H 1.09004 * 113.57692 * 139.34629 * 26 25 24 45 45 H 1.09000 * 113.66471 * 265.09633 * 27 24 13 46 46 H 1.09005 * 113.66256 * 36.15768 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7954 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1880 1.3772 -0.0028 8 8 7.0212 2.5786 -0.0043 9 7 8.4367 0.8703 -0.0035 10 6 9.5927 1.7702 -0.0055 11 1 9.3771 2.7381 0.4471 12 6 10.2958 1.8698 -1.3714 13 6 11.6304 1.8457 -0.6043 14 1 11.9898 2.8349 -0.3205 15 7 12.6623 1.0268 -1.2451 16 6 13.7083 1.6273 -1.8933 17 1 13.7728 2.7047 -1.9318 18 6 14.6859 0.8514 -2.5010 19 7 14.6070 -0.4616 -2.4545 20 14 16.1132 1.6707 -3.3847 21 1 17.0119 0.6296 -3.9447 22 1 15.5919 2.5188 -4.4867 23 1 16.8701 2.5150 -2.4259 24 6 10.8788 1.1219 0.5135 25 6 11.3048 1.2661 1.9750 26 6 10.7455 -0.1524 2.1875 27 6 10.9867 -0.3936 0.6863 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0748 -0.0006 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 2.0311 2.1264 0.0006 34 1 6.0276 -0.1777 -0.8909 35 1 6.0281 -0.1767 0.8891 36 1 8.5701 -0.0905 -0.0027 37 1 10.1084 2.8095 -1.8909 38 1 10.1418 0.9969 -2.0059 39 1 12.6046 0.0591 -1.2103 40 1 13.8660 -0.8870 -1.9953 41 1 12.3840 1.3358 2.1112 42 1 10.7573 2.0378 2.5161 43 1 9.6923 -0.1683 2.4680 44 1 11.3656 -0.7733 2.8341 45 1 10.1851 -0.9477 0.1979 46 1 11.9765 -0.7903 0.4604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001203061721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:57 Heat of formation + Delta-G solvation = 54.581088 kcal Electronic energy + Delta-G solvation = -28422.310406 eV Core-core repulsion = 24318.223486 eV Total energy + Delta-G solvation = -4104.086920 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.24720 -40.85920 -39.71925 -38.32322 -35.10053 -34.39665 -34.23600 -32.95365 -32.74483 -29.91764 -28.81372 -28.08808 -25.66888 -24.51725 -24.10193 -23.77116 -22.73947 -21.55904 -20.55991 -20.53270 -18.53124 -18.20814 -18.05973 -17.50702 -17.16361 -16.77343 -16.44928 -16.15968 -15.53040 -15.21414 -14.60368 -14.40635 -14.29593 -14.07243 -13.75235 -13.71790 -13.66295 -13.31716 -12.98720 -12.88986 -12.69708 -12.36715 -12.11524 -11.93665 -11.64406 -11.48210 -11.21655 -11.13031 -10.76994 -10.66887 -10.25519 -10.09668 -10.00800 -9.90662 -9.89223 -9.75179 -9.55302 -9.18690 -8.88478 -8.86151 -7.07394 -6.15133 -3.15175 1.03390 1.91616 2.03525 2.40956 2.71408 3.28734 3.50256 3.53204 3.70591 3.82197 4.37813 4.41809 4.54647 4.56940 4.63386 4.69857 4.73408 4.76776 4.80665 4.87348 4.88192 5.00722 5.11703 5.13646 5.25835 5.36272 5.50671 5.55944 5.69507 5.76335 5.77327 5.88209 5.99064 6.02900 6.11203 6.16755 6.21942 6.37773 6.49274 6.58587 6.62517 6.76419 6.92845 7.39752 7.78035 7.87684 8.05319 8.70483 9.16672 10.03141 10.18141 11.32626 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.002032 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.322920 B =13776.419410 C =14100.772069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C -0.009 4.009 3 C -0.233 4.233 4 C 0.213 3.787 5 O -0.255 6.255 6 C 0.044 3.956 7 C 0.516 3.484 8 O -0.521 6.521 9 N -0.706 5.706 10 C 0.148 3.852 11 H 0.113 0.887 12 C -0.175 4.175 13 C 0.188 3.812 14 H 0.082 0.918 15 N -0.717 5.717 16 C -0.334 4.334 17 H 0.066 0.934 18 C -0.044 4.044 19 N -0.942 5.942 20 Si 1.080 2.920 21 H -0.285 1.285 22 H -0.295 1.295 23 H -0.295 1.295 24 C -0.125 4.125 25 C -0.122 4.122 26 C -0.139 4.139 27 C -0.110 4.110 28 N -0.411 5.411 29 O 0.098 5.902 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.179 0.821 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.401 0.599 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.369 0.631 40 H 0.254 0.746 41 H 0.087 0.913 42 H 0.062 0.938 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.057 0.943 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.457 -0.912 8.751 27.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.073 4.073 3 C -0.254 4.254 4 C 0.015 3.985 5 O -0.160 6.160 6 C -0.034 4.034 7 C 0.300 3.700 8 O -0.396 6.396 9 N -0.359 5.359 10 C 0.043 3.957 11 H 0.131 0.869 12 C -0.217 4.217 13 C 0.075 3.925 14 H 0.100 0.900 15 N -0.357 5.357 16 C -0.465 4.465 17 H 0.084 0.916 18 C -0.241 4.241 19 N -0.588 5.588 20 Si 0.910 3.090 21 H -0.211 1.211 22 H -0.222 1.222 23 H -0.222 1.222 24 C -0.127 4.127 25 C -0.159 4.159 26 C -0.177 4.177 27 C -0.147 4.147 28 N -0.139 5.139 29 O 0.038 5.962 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.197 0.803 34 H 0.115 0.885 35 H 0.114 0.886 36 H 0.237 0.763 37 H 0.081 0.919 38 H 0.097 0.903 39 H 0.204 0.796 40 H 0.065 0.935 41 H 0.105 0.895 42 H 0.081 0.919 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.076 0.924 46 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -24.179 -0.801 7.841 25.431 hybrid contribution -1.605 0.158 0.804 1.802 sum -25.784 -0.643 8.645 27.202 Atomic orbital electron populations 1.20392 0.83431 1.04962 1.04464 1.24366 0.96518 0.85562 1.00821 1.21813 0.88261 1.01760 1.13612 1.22069 0.88470 0.88058 0.99875 1.86289 1.09961 1.30708 1.89038 1.22518 0.82426 0.93741 1.04760 1.19872 0.83894 0.88979 0.77234 1.90754 1.85560 1.15080 1.48189 1.45862 1.04729 1.10786 1.74535 1.22248 0.81279 0.93512 0.98612 0.86943 1.24299 0.99539 1.01975 0.95885 1.21071 0.86845 0.94641 0.89952 0.90050 1.42305 1.25230 1.04434 1.63716 1.20103 1.02674 0.92841 1.30875 0.91606 1.25783 1.01583 0.95985 1.00799 1.70908 1.33512 1.08469 1.45862 0.83245 0.75544 0.74407 0.75782 1.21055 1.22241 1.22217 1.23523 0.95822 0.97157 0.96226 1.22683 1.01347 0.96558 0.95312 1.22838 1.00480 0.97662 0.96703 1.22452 1.02390 0.94292 0.95598 1.74170 0.97954 1.14192 1.27586 1.84790 1.10288 1.31994 1.69105 0.89020 0.89487 0.88732 0.80349 0.88545 0.88633 0.76326 0.91868 0.90257 0.79631 0.93527 0.89476 0.91899 0.90935 0.91689 0.92392 0.88733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.18 10.45 36.01 0.38 0.19 16 2 C -0.01 -0.06 7.48 -35.36 -0.26 -0.33 16 3 C -0.23 -2.06 11.10 -39.23 -0.44 -2.49 16 4 C 0.21 2.54 8.01 -16.66 -0.13 2.41 16 5 O -0.26 -3.47 9.74 -38.75 -0.38 -3.84 16 6 C 0.04 0.51 6.14 36.00 0.22 0.73 16 7 C 0.52 7.28 7.91 -10.99 -0.09 7.19 16 8 O -0.52 -9.48 16.14 -14.36 -0.23 -9.71 16 9 N -0.71 -9.09 5.31 -53.28 -0.28 -9.37 16 10 C 0.15 2.22 4.08 -67.39 -0.28 1.95 16 11 H 0.11 1.79 7.54 -51.93 -0.39 1.40 16 12 C -0.17 -3.09 7.68 -25.75 -0.20 -3.29 16 13 C 0.19 3.64 4.35 -67.48 -0.29 3.35 16 14 H 0.08 1.62 8.11 -51.92 -0.42 1.20 16 15 N -0.72 -17.20 5.32 -52.99 -0.28 -17.48 16 16 C -0.33 -9.19 9.97 -15.06 -0.15 -9.34 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C -0.04 -1.26 5.50 -17.43 -0.10 -1.35 16 19 N -0.94 -28.56 13.70 55.49 0.76 -27.80 16 20 Si 1.08 25.70 29.92 -169.99 -5.09 20.61 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 23 H -0.29 -6.71 7.11 56.52 0.40 -6.30 16 24 C -0.12 -1.92 1.07 -154.61 -0.17 -2.08 16 25 C -0.12 -1.71 7.85 -26.28 -0.21 -1.92 16 26 C -0.14 -1.74 8.08 -25.75 -0.21 -1.95 16 27 C -0.11 -1.57 6.77 -26.29 -0.18 -1.75 16 28 N -0.41 -4.83 11.54 30.38 0.35 -4.48 16 29 O 0.10 0.96 11.19 17.09 0.19 1.15 16 30 H 0.09 0.12 8.14 -51.92 -0.42 -0.30 16 31 H 0.09 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 33 H 0.18 1.19 8.06 -52.48 -0.42 0.76 16 34 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 35 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.40 4.30 6.68 -40.82 -0.27 4.03 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 38 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 39 H 0.37 9.01 5.01 -40.82 -0.20 8.81 16 40 H 0.25 7.52 6.77 -40.82 -0.28 7.24 16 41 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 45 H 0.06 0.73 6.43 -51.93 -0.33 0.39 16 46 H 0.09 1.59 6.99 -51.93 -0.36 1.23 16 LS Contribution 383.59 15.07 5.78 5.78 Total: -1.00 -34.78 383.59 -7.81 -42.59 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -6.54 Total: 11.22 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: -2.09 Total: -8.67 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: 0.55 Total: -59.13 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -0.42 Total: -12.40 kcal Atomic # 14 Polarization: 25.70 SS G_CDS: -5.09 Total: 20.61 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.78 -7.81 -42.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203061721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.172 kcal (2) G-P(sol) polarization free energy of solvation -34.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds