Wall clock time and date at job start Tue Mar 31 2020 19:02:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.35274 * 126.70727 * 2 1 4 4 C 1.41924 * 103.95926 * 180.02562 * 3 2 1 5 5 O 1.35713 * 126.88042 * 179.97438 * 4 3 2 6 6 C 1.42894 * 117.00298 * 179.97438 * 5 4 3 7 7 C 1.50699 * 109.47408 * 179.97438 * 6 5 4 8 8 O 1.21290 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34769 * 120.00586 * 180.02562 * 7 6 5 10 10 C 1.46497 * 120.00691 * 179.97438 * 9 7 6 11 11 H 1.09003 * 112.87715 * 26.83668 * 10 9 7 12 12 C 1.53947 * 113.66195 * 255.49633 * 10 9 7 13 13 C 1.53953 * 87.29422 * 220.78978 * 12 10 9 14 14 H 1.09007 * 113.66059 * 270.17347 * 13 12 10 15 15 N 1.46490 * 113.66579 * 139.20604 * 13 12 10 16 16 C 1.36935 * 120.00121 * 106.00898 * 15 13 12 17 17 H 1.07997 * 120.00139 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00401 * 180.02562 * 16 15 13 19 19 N 1.31624 * 119.99569 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47055 * 180.02562 * 20 18 16 22 22 H 1.48505 * 109.46653 * 299.99639 * 20 18 16 23 23 H 1.48495 * 109.47483 * 60.00002 * 20 18 16 24 24 C 1.52915 * 86.88217 * 24.68527 * 13 12 10 25 25 C 1.52911 * 121.14042 * 209.42362 * 24 13 12 26 26 C 1.53952 * 86.77817 * 209.38241 * 25 24 13 27 27 C 1.52908 * 121.13264 * 100.86109 * 24 13 12 28 28 N 1.30615 * 106.24149 * 0.23898 * 4 3 2 29 29 O 1.20913 * 111.49825 * 359.57679 * 28 4 3 30 30 H 1.09010 * 109.46584 * 90.00188 * 1 2 3 31 31 H 1.08998 * 109.47000 * 209.99659 * 1 2 3 32 32 H 1.08994 * 109.47295 * 330.00271 * 1 2 3 33 33 H 1.08005 * 128.01861 * 0.04053 * 3 2 1 34 34 H 1.08999 * 109.47283 * 59.99738 * 6 5 4 35 35 H 1.09003 * 109.47058 * 299.99872 * 6 5 4 36 36 H 0.97007 * 119.99900 * 359.97438 * 9 7 6 37 37 H 1.09000 * 113.57953 * 106.18891 * 12 10 9 38 38 H 1.08998 * 113.58352 * 335.39210 * 12 10 9 39 39 H 0.97000 * 120.00577 * 286.01497 * 15 13 12 40 40 H 0.97001 * 119.99885 * 359.97438 * 19 18 16 41 41 H 1.08997 * 113.65893 * 323.85195 * 25 24 13 42 42 H 1.08998 * 113.65925 * 94.91000 * 25 24 13 43 43 H 1.09003 * 113.57773 * 270.13122 * 26 25 24 44 44 H 1.09004 * 113.57692 * 139.34629 * 26 25 24 45 45 H 1.09000 * 113.66471 * 265.09633 * 27 24 13 46 46 H 1.09005 * 113.66256 * 36.15768 * 27 24 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3156 1.0845 0.0000 4 6 3.6245 0.5357 -0.0006 5 8 4.7954 1.2219 -0.0013 6 6 5.9988 0.4515 -0.0013 7 6 7.1880 1.3772 -0.0028 8 8 7.0212 2.5786 -0.0043 9 7 8.4367 0.8703 -0.0035 10 6 9.5927 1.7702 -0.0055 11 1 9.3771 2.7381 0.4471 12 6 10.2958 1.8698 -1.3714 13 6 11.6304 1.8457 -0.6043 14 1 11.9898 2.8349 -0.3205 15 7 12.6623 1.0268 -1.2451 16 6 13.7083 1.6273 -1.8933 17 1 13.7728 2.7047 -1.9318 18 6 14.6859 0.8514 -2.5010 19 7 14.6070 -0.4616 -2.4545 20 14 16.1132 1.6707 -3.3847 21 1 17.0119 0.6296 -3.9447 22 1 15.5919 2.5188 -4.4867 23 1 16.8701 2.5150 -2.4259 24 6 10.8788 1.1219 0.5135 25 6 11.3048 1.2661 1.9750 26 6 10.7455 -0.1524 2.1875 27 6 10.9867 -0.3936 0.6863 28 7 3.4765 -0.7620 -0.0061 29 8 2.3085 -1.0748 -0.0006 30 1 -0.3633 0.0000 -1.0278 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8899 0.5138 33 1 2.0311 2.1264 0.0006 34 1 6.0276 -0.1777 -0.8909 35 1 6.0281 -0.1767 0.8891 36 1 8.5701 -0.0905 -0.0027 37 1 10.1084 2.8095 -1.8909 38 1 10.1418 0.9969 -2.0059 39 1 12.6046 0.0591 -1.2103 40 1 13.8660 -0.8870 -1.9953 41 1 12.3840 1.3358 2.1112 42 1 10.7573 2.0378 2.5161 43 1 9.6923 -0.1683 2.4680 44 1 11.3656 -0.7733 2.8341 45 1 10.1851 -0.9477 0.1979 46 1 11.9765 -0.7903 0.4604 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001203061721.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:02:57 Heat of formation + Delta-G solvation = 30.400130 kcal Electronic energy + Delta-G solvation = -28423.358971 eV Core-core repulsion = 24318.223486 eV Total energy + Delta-G solvation = -4105.135486 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -45.97677 -42.14034 -40.79784 -39.39295 -36.65951 -35.88291 -34.80841 -34.38410 -33.58539 -31.68755 -29.86489 -28.59548 -26.89282 -26.21535 -25.47841 -24.51197 -24.30353 -22.48884 -21.88064 -21.64613 -19.62954 -19.51419 -18.96722 -18.96407 -18.03627 -17.87907 -17.48686 -17.39758 -16.95069 -16.29340 -15.93683 -15.69950 -15.50983 -15.31303 -14.92467 -14.81375 -14.41512 -14.13263 -14.08833 -13.92599 -13.61799 -13.34400 -13.24894 -13.03203 -12.90431 -12.81562 -12.71455 -12.44230 -12.27388 -12.14749 -11.90925 -11.55579 -11.46525 -11.32358 -11.14703 -10.97675 -10.70445 -10.54148 -10.31153 -10.14292 -9.08142 -8.39573 -5.32917 0.41686 1.12186 1.16067 1.28816 1.57435 1.66557 1.82979 2.11117 2.35538 2.70160 3.07468 3.26075 3.35255 3.40007 3.47023 3.62340 3.79021 3.80800 3.87748 3.88978 3.91047 3.95392 3.95920 4.14817 4.36572 4.40404 4.50645 4.59401 4.63985 4.76562 4.78348 4.82953 4.87665 4.89743 4.94616 4.99907 5.04138 5.15333 5.26119 5.31963 5.43939 5.53452 5.62543 5.77249 6.30582 6.49977 6.94908 7.08987 7.18420 8.00128 8.11639 9.11970 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.022211 B = 0.002032 C = 0.001985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.322920 B =13776.419410 C =14100.772069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.011 3.989 3 C -0.251 4.251 4 C 0.189 3.811 5 O -0.279 6.279 6 C 0.050 3.950 7 C 0.520 3.480 8 O -0.564 6.564 9 N -0.693 5.693 10 C 0.168 3.832 11 H 0.109 0.891 12 C -0.171 4.171 13 C 0.168 3.832 14 H 0.071 0.929 15 N -0.728 5.728 16 C -0.333 4.333 17 H 0.064 0.936 18 C -0.103 4.103 19 N -0.974 5.974 20 Si 1.125 2.875 21 H -0.293 1.293 22 H -0.281 1.281 23 H -0.278 1.278 24 C -0.114 4.114 25 C -0.123 4.123 26 C -0.121 4.121 27 C -0.113 4.113 28 N -0.431 5.431 29 O 0.091 5.909 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.196 0.804 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.414 0.586 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.365 0.635 40 H 0.244 0.756 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.905 -1.150 9.728 30.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.053 4.053 3 C -0.273 4.273 4 C -0.008 4.008 5 O -0.185 6.185 6 C -0.028 4.028 7 C 0.306 3.694 8 O -0.442 6.442 9 N -0.346 5.346 10 C 0.062 3.938 11 H 0.127 0.873 12 C -0.213 4.213 13 C 0.057 3.943 14 H 0.089 0.911 15 N -0.368 5.368 16 C -0.464 4.464 17 H 0.082 0.918 18 C -0.294 4.294 19 N -0.621 5.621 20 Si 0.950 3.050 21 H -0.219 1.219 22 H -0.208 1.208 23 H -0.204 1.204 24 C -0.116 4.116 25 C -0.160 4.160 26 C -0.158 4.158 27 C -0.151 4.151 28 N -0.159 5.159 29 O 0.032 5.968 30 H 0.127 0.873 31 H 0.120 0.880 32 H 0.132 0.868 33 H 0.213 0.787 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.253 0.747 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.199 0.801 40 H 0.055 0.945 41 H 0.089 0.911 42 H 0.095 0.905 43 H 0.114 0.886 44 H 0.093 0.907 45 H 0.096 0.904 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -26.678 -1.046 8.850 28.127 hybrid contribution -0.984 0.270 0.504 1.138 sum -27.661 -0.776 9.354 29.211 Atomic orbital electron populations 1.20687 0.79871 1.06634 1.05973 1.25154 0.98076 0.84091 0.97978 1.22178 0.87311 1.03175 1.14609 1.22456 0.88703 0.88643 1.01024 1.86231 1.10850 1.31899 1.89542 1.22515 0.80949 0.92864 1.06496 1.20300 0.84575 0.88683 0.75870 1.90737 1.86178 1.17107 1.50228 1.45664 1.03915 1.11190 1.73878 1.21838 0.81856 0.93814 0.96242 0.87273 1.24142 0.98920 1.01212 0.97002 1.21336 0.86518 0.94395 0.92071 0.91053 1.42394 1.25672 1.04557 1.64196 1.20422 1.03200 0.92921 1.29892 0.91810 1.27101 1.04276 0.95943 1.02069 1.71004 1.33931 1.09512 1.47701 0.82646 0.73054 0.73764 0.75486 1.21899 1.20759 1.20417 1.23363 0.94588 0.97806 0.95833 1.22683 1.00714 0.98495 0.94150 1.22782 1.01873 0.96033 0.95106 1.22441 1.01671 0.93270 0.97668 1.74146 0.99082 1.14259 1.28430 1.84743 1.10094 1.32956 1.69039 0.87349 0.88044 0.86783 0.78723 0.87139 0.86363 0.74710 0.92645 0.91084 0.80111 0.94532 0.91064 0.90450 0.88644 0.90741 0.90382 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.12 10.45 71.24 0.74 0.63 16 2 C 0.01 0.13 7.48 25.00 0.19 0.31 16 3 C -0.25 -4.10 11.10 22.50 0.25 -3.85 16 4 C 0.19 4.36 8.01 85.79 0.69 5.05 16 5 O -0.28 -7.44 9.74 -71.31 -0.69 -8.14 16 6 C 0.05 1.09 6.14 71.24 0.44 1.52 16 7 C 0.52 14.06 7.91 87.66 0.69 14.75 16 8 O -0.56 -20.37 16.14 15.98 0.26 -20.11 16 9 N -0.69 -16.69 5.31 -440.87 -2.34 -19.03 16 10 C 0.17 4.91 4.08 45.34 0.19 5.10 16 11 H 0.11 3.39 7.54 -2.39 -0.02 3.37 16 12 C -0.17 -6.10 7.68 31.23 0.24 -5.86 16 13 C 0.17 6.61 4.35 45.29 0.20 6.81 16 14 H 0.07 2.93 8.11 -2.38 -0.02 2.91 16 15 N -0.73 -35.83 5.32 -321.56 -1.71 -37.54 16 16 C -0.33 -18.65 9.97 84.03 0.84 -17.81 16 17 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 18 C -0.10 -5.93 5.50 84.86 0.47 -5.47 16 19 N -0.97 -60.33 13.70 21.65 0.30 -60.03 16 20 Si 1.13 52.24 29.92 68.60 2.05 54.29 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.18 16 22 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 23 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 24 C -0.11 -3.42 1.07 -52.25 -0.06 -3.48 16 25 C -0.12 -3.31 7.85 30.89 0.24 -3.06 16 26 C -0.12 -2.71 8.08 31.23 0.25 -2.45 16 27 C -0.11 -3.11 6.77 30.88 0.21 -2.90 16 28 N -0.43 -9.69 11.54 -172.61 -1.99 -11.68 16 29 O 0.09 1.65 11.19 71.32 0.80 2.45 16 30 H 0.11 -0.09 8.14 -2.38 -0.02 -0.11 16 31 H 0.10 -0.07 8.14 -2.39 -0.02 -0.09 16 32 H 0.11 -0.20 8.14 -2.39 -0.02 -0.21 16 33 H 0.20 2.30 8.06 -2.91 -0.02 2.28 16 34 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.41 7.87 6.68 -92.70 -0.62 7.25 16 37 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 39 H 0.37 18.43 5.01 -92.71 -0.46 17.96 16 40 H 0.24 14.97 6.77 -92.71 -0.63 14.34 16 41 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 42 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 45 H 0.08 1.81 6.43 -2.39 -0.02 1.79 16 46 H 0.07 2.28 6.99 -2.38 -0.02 2.26 16 Total: -1.00 -77.63 383.59 2.32 -75.31 By element: Atomic # 1 Polarization: 35.11 SS G_CDS: 0.08 Total: 35.19 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: 5.57 Total: -10.71 kcal Atomic # 7 Polarization: -122.54 SS G_CDS: -5.75 Total: -128.28 kcal Atomic # 8 Polarization: -26.16 SS G_CDS: 0.36 Total: -25.80 kcal Atomic # 14 Polarization: 52.24 SS G_CDS: 2.05 Total: 54.29 kcal Total: -77.63 2.32 -75.31 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001203061721.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.708 kcal (2) G-P(sol) polarization free energy of solvation -77.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds