Wall clock time and date at job start Tue Mar 31 2020 19:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35131 * 126.44057 * 2 1 4 4 O 1.33939 * 108.76709 * 179.97438 * 3 2 1 5 5 C 1.34915 * 109.38358 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98536 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99548 * 187.07102 * 6 5 4 8 8 N 1.34771 * 120.00285 * 7.06805 * 6 5 4 9 9 C 1.46930 * 120.63155 * 186.34380 * 8 6 5 10 10 C 1.53627 * 108.54294 * 126.36844 * 9 8 6 11 11 C 1.53041 * 109.23940 * 54.85532 * 10 9 8 12 12 C 1.53042 * 109.54124 * 298.51032 * 11 10 9 13 13 H 1.09004 * 109.49602 * 301.41356 * 12 11 10 14 14 N 1.46897 * 109.49767 * 181.31932 * 12 11 10 15 15 C 1.46900 * 111.00150 * 155.15978 * 14 12 11 16 16 C 1.50696 * 109.47330 * 179.97438 * 15 14 12 17 17 O 1.21289 * 120.00319 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99896 * 180.02562 * 16 15 14 19 19 C 1.37104 * 120.00112 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99764 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00112 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00405 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47033 * 89.99895 * 23 21 19 25 25 H 1.48502 * 109.47495 * 210.00438 * 23 21 19 26 26 H 1.48507 * 109.46945 * 330.00420 * 23 21 19 27 27 C 1.46928 * 120.63018 * 6.62139 * 8 6 5 28 28 C 1.36548 * 108.02293 * 0.24294 * 5 4 3 29 29 H 1.09001 * 109.47140 * 89.97614 * 1 2 3 30 30 H 1.08997 * 109.47372 * 209.97186 * 1 2 3 31 31 H 1.08996 * 109.47430 * 329.97612 * 1 2 3 32 32 H 1.07996 * 125.61951 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.58277 * 246.20246 * 9 8 6 34 34 H 1.08994 * 109.58711 * 6.62914 * 9 8 6 35 35 H 1.08998 * 109.63487 * 294.86646 * 10 9 8 36 36 H 1.08995 * 109.45785 * 174.73957 * 10 9 8 37 37 H 1.09002 * 109.45765 * 178.49117 * 11 10 9 38 38 H 1.09004 * 109.45155 * 58.52631 * 11 10 9 39 39 H 1.00896 * 111.00187 * 31.20669 * 14 12 11 40 40 H 1.08999 * 109.47181 * 300.00348 * 15 14 12 41 41 H 1.09004 * 109.47092 * 59.99867 * 15 14 12 42 42 H 0.97006 * 120.00342 * 0.02562 * 18 16 15 43 43 H 0.96995 * 120.00109 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58745 * 353.37450 * 27 8 6 45 45 H 1.08997 * 109.58648 * 113.65440 * 27 8 6 46 46 H 1.08002 * 126.64208 * 179.75981 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4940 0.0018 7 8 4.7516 -2.7011 -0.1271 8 7 6.0471 -0.9163 0.1448 9 6 7.2765 -1.7094 0.0089 10 6 8.1819 -1.0328 -1.0315 11 6 8.4159 0.4240 -0.6251 12 6 7.0788 1.1679 -0.5943 13 1 6.6102 1.1149 -1.5771 14 7 7.3080 2.5736 -0.2349 15 6 6.2288 3.4301 -0.7446 16 6 6.4976 4.8613 -0.3568 17 8 7.4907 5.1405 0.2811 18 7 5.6344 5.8310 -0.7187 19 6 5.8791 7.1332 -0.3663 20 1 6.7639 7.3819 0.2010 21 6 4.9895 8.1330 -0.7399 22 7 3.9133 7.8305 -1.4306 23 14 5.3234 9.9072 -0.2604 24 1 6.1233 10.5654 -1.3244 25 1 4.0346 10.6260 -0.0939 26 1 6.0777 9.9409 1.0183 27 6 6.1610 0.5174 0.4454 28 6 2.3408 -1.1291 -0.0040 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 1.9769 2.1145 -0.0004 33 1 7.7897 -1.7553 0.9694 34 1 7.0264 -2.7172 -0.3226 35 1 7.7030 -1.0651 -2.0101 36 1 9.1371 -1.5559 -1.0765 37 1 9.0797 0.9001 -1.3467 38 1 8.8721 0.4560 0.3643 39 1 8.2072 2.8895 -0.5659 40 1 6.1836 3.3499 -1.8307 41 1 5.2785 3.1105 -0.3169 42 1 4.8399 5.6077 -1.2286 43 1 3.2921 8.5284 -1.6911 44 1 5.1747 0.9793 0.4021 45 1 6.5828 0.6494 1.4418 46 1 2.0266 -2.1624 -0.0084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209121255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:15 Heat of formation + Delta-G solvation = -45.920778 kcal Electronic energy + Delta-G solvation = -29276.359754 eV Core-core repulsion = 25167.914745 eV Total energy + Delta-G solvation = -4108.445008 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.93656 -40.16106 -38.50024 -37.68623 -35.01170 -34.45598 -33.85549 -32.83662 -31.27045 -30.69611 -29.85630 -27.58075 -26.40430 -25.91262 -24.25981 -23.25618 -21.93128 -21.26454 -20.65810 -19.44013 -19.21049 -17.90773 -17.62625 -16.95227 -16.48503 -16.14003 -16.10512 -15.35674 -15.11041 -14.89430 -14.63882 -14.45768 -13.97865 -13.91040 -13.73706 -13.63724 -13.42684 -13.32784 -13.09828 -13.01469 -12.78412 -12.47671 -12.17936 -11.91628 -11.89568 -11.58806 -11.42923 -11.16067 -11.06424 -11.04121 -10.68038 -10.41765 -10.28071 -10.24047 -9.88040 -9.53954 -9.03134 -8.67420 -8.48026 -8.13987 -7.99247 -6.44884 -3.85631 0.89999 2.14678 2.41037 2.87679 3.01288 3.15530 3.24565 3.30415 3.87417 3.98278 4.18561 4.38638 4.53690 4.61040 4.69919 4.79306 4.81688 4.90056 5.03543 5.13895 5.18462 5.23770 5.32833 5.37276 5.42049 5.47259 5.55919 5.59978 5.66451 5.68306 5.73145 5.75413 5.79391 5.83556 5.93960 6.05697 6.09161 6.21465 6.25471 6.36774 6.71500 7.09327 7.18184 7.52374 7.58936 7.82364 8.03180 8.57943 9.14927 9.50917 10.02319 10.72829 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003249 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.516958 B = 8615.830778 C =10979.734595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.198 4.198 3 C -0.006 4.006 4 O -0.151 6.151 5 C -0.082 4.082 6 C 0.605 3.395 7 O -0.529 6.529 8 N -0.602 5.602 9 C 0.111 3.889 10 C -0.131 4.131 11 C -0.124 4.124 12 C 0.077 3.923 13 H 0.047 0.953 14 N -0.661 5.661 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.582 6.582 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C 0.099 3.901 28 C -0.114 4.114 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.068 0.932 32 H 0.211 0.789 33 H 0.073 0.927 34 H 0.093 0.907 35 H 0.067 0.933 36 H 0.080 0.920 37 H 0.068 0.932 38 H 0.077 0.923 39 H 0.354 0.646 40 H 0.044 0.956 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.112 0.888 45 H 0.082 0.918 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.322 -18.392 -0.023 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.199 4.199 3 C -0.075 4.075 4 O -0.047 6.047 5 C -0.133 4.133 6 C 0.394 3.606 7 O -0.408 6.408 8 N -0.334 5.334 9 C -0.011 4.011 10 C -0.170 4.170 11 C -0.162 4.162 12 C -0.034 4.034 13 H 0.065 0.935 14 N -0.295 5.295 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.466 6.466 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.023 4.023 28 C -0.134 4.134 29 H 0.087 0.913 30 H 0.086 0.914 31 H 0.087 0.913 32 H 0.228 0.772 33 H 0.091 0.909 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.175 0.825 40 H 0.062 0.938 41 H 0.104 0.896 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.129 0.871 45 H 0.101 0.899 46 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -1.827 -18.586 0.900 18.697 hybrid contribution -0.415 0.967 -1.109 1.529 sum -2.242 -17.619 -0.208 17.762 Atomic orbital electron populations 1.20181 0.88633 1.02857 1.02356 1.20469 0.97712 0.92281 1.09428 1.24554 0.80522 1.00434 1.01974 1.84249 1.28345 1.21442 1.70698 1.21935 0.95864 0.80867 1.14664 1.16697 0.81116 0.86131 0.76695 1.90849 1.85642 1.12729 1.51555 1.48005 1.05384 1.10541 1.69453 1.21787 0.83984 0.95728 0.99559 1.21977 0.99920 0.95964 0.99090 1.21743 0.96634 0.94824 1.02958 1.21775 0.95798 0.89152 0.96685 0.93527 1.59950 1.05808 0.99523 1.64204 1.21743 0.95817 0.93143 0.97523 1.19786 0.85931 0.86123 0.85516 1.90526 1.29467 1.82957 1.43695 1.41858 1.22413 1.06648 1.49086 1.19705 1.08516 0.82027 1.32628 0.87920 1.25246 0.95343 1.00443 0.96821 1.69606 1.12026 1.34522 1.38192 0.85870 0.77642 0.81708 0.79159 1.20432 1.20911 1.19378 1.22352 1.02736 0.77981 0.99235 1.21805 0.90508 1.00423 1.00710 0.91274 0.91437 0.91262 0.77222 0.90861 0.88817 0.91441 0.90143 0.91301 0.90453 0.82488 0.93845 0.89635 0.77507 0.91878 0.87103 0.89928 0.82476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.63 10.39 36.00 0.37 -0.26 16 2 C -0.20 -2.03 6.14 -104.93 -0.64 -2.68 16 3 C -0.01 -0.06 12.00 29.63 0.36 0.30 16 4 O -0.15 -1.88 7.15 4.97 0.04 -1.84 16 5 C -0.08 -1.06 6.83 -36.80 -0.25 -1.31 16 6 C 0.60 8.30 7.65 -12.87 -0.10 8.20 16 7 O -0.53 -8.30 16.32 5.19 0.08 -8.22 16 8 N -0.60 -7.23 2.97 -174.05 -0.52 -7.75 16 9 C 0.11 1.09 6.44 -3.48 -0.02 1.07 16 10 C -0.13 -1.13 6.10 -26.38 -0.16 -1.29 16 11 C -0.12 -1.23 5.17 -26.69 -0.14 -1.37 16 12 C 0.08 0.94 2.64 -67.60 -0.18 0.76 16 13 H 0.05 0.60 7.80 -51.93 -0.41 0.19 16 14 N -0.66 -10.13 5.93 -107.87 -0.64 -10.77 16 15 C 0.05 0.86 5.97 -4.98 -0.03 0.83 16 16 C 0.44 10.10 7.82 -10.99 -0.09 10.02 16 17 O -0.58 -15.42 15.78 5.55 0.09 -15.34 16 18 N -0.56 -13.88 5.29 -10.96 -0.06 -13.94 16 19 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -23.95 13.05 55.50 0.72 -23.23 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 25 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 27 C 0.10 1.23 5.79 -3.71 -0.02 1.20 16 28 C -0.11 -1.33 10.58 -39.39 -0.42 -1.74 16 29 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.21 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.09 0.96 7.05 -51.93 -0.37 0.59 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.07 0.65 8.10 -51.93 -0.42 0.23 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.35 5.57 8.04 -39.29 -0.32 5.26 16 40 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 41 H 0.09 1.35 7.56 -51.93 -0.39 0.96 16 42 H 0.39 9.19 7.90 -40.82 -0.32 8.87 16 43 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 44 H 0.11 1.47 3.28 -54.95 -0.18 1.29 16 45 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 46 H 0.16 1.66 8.06 -52.49 -0.42 1.23 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -32.34 380.54 -7.69 -40.03 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: -6.56 Total: 13.75 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.56 Total: 5.92 kcal Atomic # 7 Polarization: -55.20 SS G_CDS: -0.49 Total: -55.69 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: 0.21 Total: -25.40 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.34 -7.69 -40.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209121255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.892 kcal (2) G-P(sol) polarization free energy of solvation -32.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds