Wall clock time and date at job start Tue Mar 31 2020 19:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35131 * 126.44057 * 2 1 4 4 O 1.33939 * 108.76709 * 179.97438 * 3 2 1 5 5 C 1.34915 * 109.38358 * 359.97438 * 4 3 2 6 6 C 1.46654 * 125.98536 * 179.97438 * 5 4 3 7 7 O 1.21702 * 119.99548 * 187.07102 * 6 5 4 8 8 N 1.34771 * 120.00285 * 7.06805 * 6 5 4 9 9 C 1.46930 * 120.63155 * 186.34380 * 8 6 5 10 10 C 1.53627 * 108.54294 * 126.36844 * 9 8 6 11 11 C 1.53041 * 109.23940 * 54.85532 * 10 9 8 12 12 C 1.53042 * 109.54124 * 298.51032 * 11 10 9 13 13 H 1.09004 * 109.49602 * 301.41356 * 12 11 10 14 14 N 1.46897 * 109.49767 * 181.31932 * 12 11 10 15 15 C 1.46900 * 111.00150 * 155.15978 * 14 12 11 16 16 C 1.50696 * 109.47330 * 179.97438 * 15 14 12 17 17 O 1.21289 * 120.00319 * 0.02562 * 16 15 14 18 18 N 1.34775 * 119.99896 * 180.02562 * 16 15 14 19 19 C 1.37104 * 120.00112 * 180.02562 * 18 16 15 20 20 H 1.08005 * 119.99764 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00112 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00405 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00169 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47033 * 89.99895 * 23 21 19 25 25 H 1.48502 * 109.47495 * 210.00438 * 23 21 19 26 26 H 1.48507 * 109.46945 * 330.00420 * 23 21 19 27 27 C 1.46928 * 120.63018 * 6.62139 * 8 6 5 28 28 C 1.36548 * 108.02293 * 0.24294 * 5 4 3 29 29 H 1.09001 * 109.47140 * 89.97614 * 1 2 3 30 30 H 1.08997 * 109.47372 * 209.97186 * 1 2 3 31 31 H 1.08996 * 109.47430 * 329.97612 * 1 2 3 32 32 H 1.07996 * 125.61951 * 359.97438 * 3 2 1 33 33 H 1.09000 * 109.58277 * 246.20246 * 9 8 6 34 34 H 1.08994 * 109.58711 * 6.62914 * 9 8 6 35 35 H 1.08998 * 109.63487 * 294.86646 * 10 9 8 36 36 H 1.08995 * 109.45785 * 174.73957 * 10 9 8 37 37 H 1.09002 * 109.45765 * 178.49117 * 11 10 9 38 38 H 1.09004 * 109.45155 * 58.52631 * 11 10 9 39 39 H 1.00896 * 111.00187 * 31.20669 * 14 12 11 40 40 H 1.08999 * 109.47181 * 300.00348 * 15 14 12 41 41 H 1.09004 * 109.47092 * 59.99867 * 15 14 12 42 42 H 0.97006 * 120.00342 * 0.02562 * 18 16 15 43 43 H 0.96995 * 120.00109 * 179.97438 * 22 21 19 44 44 H 1.08997 * 109.58745 * 353.37450 * 27 8 6 45 45 H 1.08997 * 109.58648 * 113.65440 * 27 8 6 46 46 H 1.08002 * 126.64208 * 179.75981 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3096 1.0871 0.0000 4 8 3.5858 0.6805 0.0006 5 6 3.6260 -0.6681 0.0015 6 6 4.8379 -1.4940 0.0018 7 8 4.7516 -2.7011 -0.1271 8 7 6.0471 -0.9163 0.1448 9 6 7.2765 -1.7094 0.0089 10 6 8.1819 -1.0328 -1.0315 11 6 8.4159 0.4240 -0.6251 12 6 7.0788 1.1679 -0.5943 13 1 6.6102 1.1149 -1.5771 14 7 7.3080 2.5736 -0.2349 15 6 6.2288 3.4301 -0.7446 16 6 6.4976 4.8613 -0.3568 17 8 7.4907 5.1405 0.2811 18 7 5.6344 5.8310 -0.7187 19 6 5.8791 7.1332 -0.3663 20 1 6.7639 7.3819 0.2010 21 6 4.9895 8.1330 -0.7399 22 7 3.9133 7.8305 -1.4306 23 14 5.3234 9.9072 -0.2604 24 1 6.1233 10.5654 -1.3244 25 1 4.0346 10.6260 -0.0939 26 1 6.0777 9.9409 1.0183 27 6 6.1610 0.5174 0.4454 28 6 2.3408 -1.1291 -0.0040 29 1 -0.3633 0.0004 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3634 0.8897 0.5142 32 1 1.9769 2.1145 -0.0004 33 1 7.7897 -1.7553 0.9694 34 1 7.0264 -2.7172 -0.3226 35 1 7.7030 -1.0651 -2.0101 36 1 9.1371 -1.5559 -1.0765 37 1 9.0797 0.9001 -1.3467 38 1 8.8721 0.4560 0.3643 39 1 8.2072 2.8895 -0.5659 40 1 6.1836 3.3499 -1.8307 41 1 5.2785 3.1105 -0.3169 42 1 4.8399 5.6077 -1.2286 43 1 3.2921 8.5284 -1.6911 44 1 5.1747 0.9793 0.4021 45 1 6.5828 0.6494 1.4418 46 1 2.0266 -2.1624 -0.0084 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209121255.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:05:14 Heat of formation + Delta-G solvation = -68.586366 kcal Electronic energy + Delta-G solvation = -29277.342607 eV Core-core repulsion = 25167.914745 eV Total energy + Delta-G solvation = -4109.427862 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.81571 -41.14494 -40.15722 -38.90264 -36.32007 -35.71321 -35.25643 -33.75552 -33.23846 -31.60458 -30.94053 -28.33228 -27.93624 -26.85055 -25.88063 -24.21690 -22.91254 -22.15049 -21.60769 -20.99958 -20.29524 -19.87311 -18.55009 -18.01696 -17.62295 -17.40555 -17.09155 -16.76807 -16.42060 -16.12239 -16.04125 -15.61292 -15.41274 -15.28689 -14.90214 -14.53990 -14.27373 -14.17451 -14.07698 -13.95793 -13.80103 -13.71252 -13.49774 -13.28831 -13.09840 -12.90379 -12.57616 -12.51709 -12.39731 -12.11597 -11.97463 -11.87213 -11.69495 -11.49220 -11.23289 -10.73914 -10.34358 -10.00069 -9.97780 -9.54766 -9.37190 -8.45160 -5.93455 -0.03668 1.31239 1.39056 1.43640 1.51431 1.55742 1.93598 2.04384 2.06369 2.30373 2.86365 3.22187 3.33088 3.53034 3.68003 3.80253 3.88495 3.98347 4.02984 4.12726 4.23132 4.26044 4.31922 4.42912 4.51141 4.56464 4.57986 4.63208 4.77114 4.79583 4.85743 4.87617 4.97414 4.98492 5.04159 5.07931 5.18992 5.28488 5.40655 5.43095 5.53061 5.83939 5.87772 6.07512 6.16693 6.36360 6.61506 6.82495 7.14349 7.57580 8.12796 8.72088 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003249 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.516958 B = 8615.830778 C =10979.734595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.200 4.200 3 C -0.010 4.010 4 O -0.161 6.161 5 C -0.107 4.107 6 C 0.600 3.400 7 O -0.557 6.557 8 N -0.598 5.598 9 C 0.105 3.895 10 C -0.121 4.121 11 C -0.120 4.120 12 C 0.082 3.918 13 H 0.046 0.954 14 N -0.670 5.670 15 C 0.066 3.934 16 C 0.440 3.560 17 O -0.621 6.621 18 N -0.571 5.571 19 C -0.333 4.333 20 H 0.079 0.921 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.271 1.271 26 H -0.273 1.273 27 C 0.102 3.898 28 C -0.116 4.116 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.077 0.923 38 H 0.078 0.922 39 H 0.352 0.648 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.105 0.895 45 H 0.079 0.921 46 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.747 -18.437 -0.371 18.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.201 4.201 3 C -0.079 4.079 4 O -0.058 6.058 5 C -0.158 4.158 6 C 0.390 3.610 7 O -0.439 6.439 8 N -0.329 5.329 9 C -0.016 4.016 10 C -0.159 4.159 11 C -0.158 4.158 12 C -0.028 4.028 13 H 0.064 0.936 14 N -0.303 5.303 15 C -0.066 4.066 16 C 0.227 3.773 17 O -0.507 6.507 18 N -0.209 5.209 19 C -0.463 4.463 20 H 0.097 0.903 21 C -0.210 4.210 22 N -0.559 5.559 23 Si 0.813 3.187 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.020 4.020 28 C -0.137 4.137 29 H 0.095 0.905 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.081 0.919 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.172 0.828 40 H 0.081 0.919 41 H 0.119 0.881 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.122 0.878 45 H 0.097 0.903 46 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.256 -18.645 0.537 18.789 hybrid contribution -0.304 0.952 -0.984 1.403 sum -2.559 -17.693 -0.447 17.883 Atomic orbital electron populations 1.20265 0.86648 1.03846 1.03168 1.20798 0.99061 0.91557 1.08711 1.25132 0.79959 1.01640 1.01124 1.84220 1.29342 1.21157 1.71033 1.21929 0.96065 0.81250 1.16549 1.16855 0.81755 0.85943 0.76448 1.90819 1.86113 1.13755 1.53195 1.48064 1.05699 1.10465 1.68643 1.21991 0.83412 0.95400 1.00761 1.21930 1.00784 0.95049 0.98145 1.21731 0.95255 0.95351 1.03416 1.21785 0.97221 0.87483 0.96332 0.93649 1.59925 1.05126 1.00736 1.64553 1.21575 0.96997 0.89363 0.98685 1.20770 0.84627 0.88037 0.83858 1.90496 1.30959 1.84136 1.45149 1.41907 1.23018 1.06364 1.49573 1.19655 1.08643 0.83848 1.34127 0.90345 1.25974 0.94878 1.03812 0.96313 1.69659 1.12303 1.35828 1.38150 0.84977 0.77911 0.77143 0.78623 1.19756 1.19563 1.19819 1.22266 1.02453 0.78210 0.99072 1.22061 0.90510 1.01241 0.99886 0.90472 0.90685 0.90088 0.74936 0.89526 0.89252 0.91942 0.87507 0.90477 0.90298 0.82753 0.91942 0.88114 0.76964 0.91311 0.87753 0.90280 0.81916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.09 10.39 71.23 0.74 -0.35 16 2 C -0.20 -3.87 6.14 -20.06 -0.12 -3.99 16 3 C -0.01 -0.20 12.00 67.10 0.81 0.61 16 4 O -0.16 -3.90 7.15 -5.13 -0.04 -3.94 16 5 C -0.11 -2.75 6.83 24.07 0.16 -2.59 16 6 C 0.60 16.50 7.65 86.44 0.66 17.16 16 7 O -0.56 -17.69 16.32 -4.36 -0.07 -17.76 16 8 N -0.60 -14.00 2.97 -822.80 -2.44 -16.44 16 9 C 0.11 1.94 6.44 86.51 0.56 2.49 16 10 C -0.12 -1.82 6.10 30.82 0.19 -1.63 16 11 C -0.12 -2.15 5.17 30.62 0.16 -1.99 16 12 C 0.08 1.91 2.64 44.99 0.12 2.02 16 13 H 0.05 1.09 7.80 -2.38 -0.02 1.07 16 14 N -0.67 -19.87 5.93 -495.18 -2.94 -22.81 16 15 C 0.07 2.19 5.97 85.56 0.51 2.70 16 16 C 0.44 20.22 7.82 87.66 0.69 20.90 16 17 O -0.62 -33.41 15.78 -3.06 -0.05 -33.46 16 18 N -0.57 -28.38 5.29 -306.99 -1.62 -30.01 16 19 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 22 N -0.92 -48.08 13.05 21.66 0.28 -47.80 16 23 Si 0.99 41.95 29.55 68.60 2.03 43.98 16 24 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 25 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 27 C 0.10 2.45 5.79 86.36 0.50 2.95 16 28 C -0.12 -2.66 10.58 22.39 0.24 -2.43 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 32 H 0.23 3.27 8.06 -2.91 -0.02 3.24 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.09 1.76 7.05 -2.39 -0.02 1.74 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 1.29 8.10 -2.39 -0.02 1.27 16 38 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 39 H 0.35 10.78 8.04 -89.70 -0.72 10.06 16 40 H 0.06 1.86 8.06 -2.39 -0.02 1.84 16 41 H 0.10 3.05 7.56 -2.38 -0.02 3.04 16 42 H 0.40 18.60 7.90 -92.70 -0.73 17.87 16 43 H 0.28 13.61 8.31 -92.71 -0.77 12.84 16 44 H 0.11 2.70 3.28 -50.18 -0.16 2.54 16 45 H 0.08 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.16 3.41 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -69.85 380.54 1.05 -68.80 By element: Atomic # 1 Polarization: 41.86 SS G_CDS: -0.58 Total: 41.28 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: 6.48 Total: 18.15 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -6.72 Total: -117.06 kcal Atomic # 8 Polarization: -54.99 SS G_CDS: -0.16 Total: -55.15 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.98 kcal Total: -69.85 1.05 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209121255.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.209 kcal (2) G-P(sol) polarization free energy of solvation -69.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds