Wall clock time and date at job start Tue Mar 31 2020 19:07:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40367 * 126.63880 * 2 1 4 4 C 1.35131 * 107.11242 * 180.22439 * 3 2 1 5 5 O 1.33930 * 108.76817 * 359.78343 * 4 3 2 6 6 C 1.34917 * 109.38513 * 359.97438 * 5 4 3 7 7 C 1.46653 * 125.98959 * 179.97438 * 6 5 4 8 8 O 1.21698 * 120.00117 * 180.02562 * 7 6 5 9 9 N 1.34777 * 119.99844 * 0.02562 * 7 6 5 10 10 C 1.47018 * 125.64981 * 0.02872 * 9 7 6 11 11 C 1.54325 * 107.40412 * 178.82520 * 10 9 7 12 12 H 1.09000 * 110.72188 * 96.24097 * 11 10 9 13 13 C 1.52995 * 110.72304 * 219.52316 * 11 10 9 14 14 C 1.55405 * 102.82616 * 337.97548 * 11 10 9 15 15 H 1.09000 * 110.89538 * 277.26533 * 14 11 10 16 16 N 1.46906 * 111.03686 * 153.46898 * 14 11 10 17 17 C 1.46904 * 110.99383 * 161.22880 * 16 14 11 18 18 C 1.50709 * 109.46565 * 180.02562 * 17 16 14 19 19 O 1.21289 * 119.99971 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99787 * 180.02562 * 18 17 16 21 21 C 1.37093 * 119.99695 * 179.97438 * 20 18 17 22 22 H 1.08001 * 120.00208 * 0.02562 * 21 20 18 23 23 C 1.38948 * 119.99933 * 179.97438 * 21 20 18 24 24 N 1.31421 * 119.99923 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 120.00335 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.46855 * 90.00077 * 25 23 21 27 27 H 1.48493 * 109.47107 * 210.00196 * 25 23 21 28 28 H 1.48499 * 109.46676 * 330.00462 * 25 23 21 29 29 C 1.47426 * 125.64500 * 179.97438 * 9 7 6 30 30 H 1.09003 * 109.46681 * 270.14739 * 1 2 3 31 31 H 1.08996 * 109.47899 * 30.15517 * 1 2 3 32 32 H 1.09003 * 109.46781 * 150.15240 * 1 2 3 33 33 H 1.08001 * 126.44873 * 359.97438 * 3 2 1 34 34 H 1.08009 * 125.61961 * 179.78180 * 4 3 2 35 35 H 1.09002 * 109.88241 * 298.32048 * 10 9 7 36 36 H 1.09000 * 109.88049 * 59.33177 * 10 9 7 37 37 H 1.08999 * 109.47083 * 58.54334 * 13 11 10 38 38 H 1.09002 * 109.47293 * 178.54343 * 13 11 10 39 39 H 1.09000 * 109.47062 * 298.54438 * 13 11 10 40 40 H 1.00894 * 111.00184 * 285.18339 * 16 14 11 41 41 H 1.08990 * 109.47445 * 299.99831 * 17 16 14 42 42 H 1.09000 * 109.47295 * 60.00909 * 17 16 14 43 43 H 0.96996 * 119.99820 * 0.02562 * 20 18 17 44 44 H 0.97001 * 119.99662 * 179.97438 * 24 23 21 45 45 H 1.08999 * 110.36956 * 323.01018 * 29 9 7 46 46 H 1.09003 * 110.36599 * 85.32922 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3447 1.1263 0.0000 4 6 3.6183 0.6747 -0.0051 5 8 3.6006 -0.6645 -0.0033 6 6 2.3221 -1.0955 0.0034 7 6 1.8844 -2.4952 0.0067 8 8 0.6970 -2.7614 0.0124 9 7 2.7974 -3.4866 0.0034 10 6 4.2566 -3.3077 -0.0028 11 6 4.8941 -4.7129 0.0256 12 1 5.1526 -5.0395 -0.9817 13 6 6.1245 -4.7310 0.9347 14 6 3.7583 -5.5952 0.6143 15 1 3.7448 -5.5362 1.7026 16 7 3.8866 -6.9883 0.1661 17 6 3.1239 -7.8934 1.0362 18 6 3.2796 -9.3103 0.5467 19 8 3.9587 -9.5430 -0.4310 20 7 2.6634 -10.3187 1.1948 21 6 2.8047 -11.6075 0.7492 22 1 3.4100 -11.8148 -0.1209 23 6 2.1699 -12.6472 1.4176 24 7 1.4337 -12.3950 2.4766 25 14 2.3629 -14.4034 0.8109 26 1 3.5381 -15.0282 1.4696 27 1 1.1401 -15.1784 1.1413 28 1 2.5641 -14.3994 -0.6604 29 6 2.4980 -4.9302 0.0067 30 1 -0.3633 0.0026 1.0277 31 1 -0.3635 0.8885 -0.5162 32 1 -0.3633 -0.8914 -0.5115 33 1 2.0305 2.1596 -0.0004 34 1 4.5046 1.2919 -0.0097 35 1 4.5616 -2.7805 -0.9067 36 1 4.5646 -2.7432 0.8773 37 1 5.8361 -4.4318 1.9424 38 1 6.5427 -5.7372 0.9601 39 1 6.8712 -4.0367 0.5493 40 1 3.6010 -7.0862 -0.7966 41 1 3.4994 -7.8187 2.0566 42 1 2.0701 -7.6153 1.0154 43 1 2.1195 -10.1324 1.9759 44 1 0.9903 -13.1208 2.9430 45 1 1.6249 -5.1352 0.6260 46 1 2.3346 -5.2860 -1.0106 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001214139931.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:12 Heat of formation + Delta-G solvation = -52.258543 kcal Electronic energy + Delta-G solvation = -28457.898662 eV Core-core repulsion = 24349.178828 eV Total energy + Delta-G solvation = -4108.719835 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.04634 -40.23651 -38.51867 -37.85875 -34.93713 -34.33343 -33.79300 -32.63632 -31.22897 -30.93166 -29.20431 -27.84435 -26.54239 -26.16183 -24.25734 -23.12967 -22.01457 -21.32267 -20.60858 -19.66872 -19.21489 -17.99690 -17.82735 -16.95908 -16.58336 -16.31852 -16.06166 -15.44668 -15.25674 -14.61493 -14.48188 -14.25303 -14.14693 -13.74863 -13.58678 -13.42463 -13.40227 -13.25699 -13.13935 -13.05716 -12.80459 -12.36336 -12.29050 -12.15844 -12.09477 -11.68546 -11.52719 -11.28416 -11.09214 -11.02332 -10.77574 -10.39486 -10.33701 -10.21957 -10.05617 -9.51460 -9.13486 -8.78753 -8.49787 -8.13465 -7.96812 -6.41923 -3.82864 0.74293 1.98365 2.30827 2.78479 2.89664 3.18023 3.26794 3.32568 3.89297 3.99143 4.13618 4.24381 4.37166 4.42695 4.45535 4.64209 4.79537 5.02116 5.07214 5.12568 5.15348 5.18347 5.25409 5.30198 5.37865 5.41714 5.44546 5.58617 5.59672 5.68762 5.71559 5.76076 5.82399 5.84065 5.91462 5.95707 6.08417 6.12282 6.20479 6.26469 6.54276 7.11413 7.16350 7.53742 7.55114 7.77959 8.05487 8.60294 9.17314 9.53499 10.04496 10.75691 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.023543 B = 0.002063 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.045829 B =13571.327598 C =14435.161133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.088 4.088 3 C -0.225 4.225 4 C -0.007 4.007 5 O -0.159 6.159 6 C -0.080 4.080 7 C 0.614 3.386 8 O -0.519 6.519 9 N -0.606 5.606 10 C 0.105 3.895 11 C -0.092 4.092 12 H 0.092 0.908 13 C -0.136 4.136 14 C 0.081 3.919 15 H 0.096 0.904 16 N -0.649 5.649 17 C 0.048 3.952 18 C 0.440 3.560 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.901 5.901 25 Si 0.931 3.069 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.074 3.926 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.087 0.913 33 H 0.155 0.845 34 H 0.210 0.790 35 H 0.071 0.929 36 H 0.074 0.926 37 H 0.053 0.947 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.353 0.647 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.083 0.917 46 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.909 27.877 -1.682 28.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.091 4.091 3 C -0.244 4.244 4 C -0.077 4.077 5 O -0.054 6.054 6 C -0.132 4.132 7 C 0.403 3.597 8 O -0.397 6.397 9 N -0.339 5.339 10 C -0.018 4.018 11 C -0.111 4.111 12 H 0.111 0.889 13 C -0.193 4.193 14 C -0.031 4.031 15 H 0.114 0.886 16 N -0.280 5.280 17 C -0.085 4.085 18 C 0.226 3.774 19 O -0.468 6.468 20 N -0.199 5.199 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.542 5.542 25 Si 0.758 3.242 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.050 4.050 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.105 0.895 33 H 0.173 0.827 34 H 0.226 0.774 35 H 0.090 0.910 36 H 0.092 0.908 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.073 0.927 40 H 0.173 0.827 41 H 0.106 0.894 42 H 0.065 0.935 43 H 0.226 0.774 44 H 0.081 0.919 45 H 0.101 0.899 46 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 4.409 27.127 -1.896 27.548 hybrid contribution -1.197 -0.215 0.020 1.217 sum 3.212 26.912 -1.876 27.168 Atomic orbital electron populations 1.20436 0.88171 1.03639 1.02976 1.20658 0.97720 0.90962 0.99737 1.21747 0.92451 1.00133 1.10080 1.24392 0.99964 0.80848 1.02504 1.84158 1.28242 1.22432 1.70612 1.21755 0.81543 0.94484 1.15382 1.16169 0.84843 0.81357 0.77294 1.90870 1.15221 1.82117 1.51473 1.48211 1.07113 1.06422 1.72178 1.22282 0.78818 0.98233 1.02435 1.22255 0.95337 0.92028 1.01482 0.88950 1.21672 0.96199 1.03052 0.98382 1.22970 0.91751 0.88320 1.00034 0.88572 1.60148 1.59095 1.01630 1.07121 1.21753 0.96103 0.92740 0.97894 1.19757 0.85006 0.85962 0.86696 1.90526 1.43363 1.84295 1.28612 1.41861 1.44003 1.06189 1.27855 1.19699 1.28853 0.81822 1.12521 0.87894 1.25277 0.96354 1.00435 0.95921 1.69617 1.31883 1.33668 1.19056 0.85849 0.77608 0.81544 0.79234 1.20387 1.20943 1.19418 1.23258 1.00572 0.79187 1.01974 0.90730 0.91442 0.89475 0.82696 0.77359 0.91022 0.90771 0.92771 0.90871 0.92658 0.82657 0.89378 0.93550 0.77429 0.91851 0.89906 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.89 9.81 36.01 0.35 -0.54 16 2 C -0.09 -0.90 6.20 -104.43 -0.65 -1.54 16 3 C -0.23 -1.67 10.83 -39.89 -0.43 -2.11 16 4 C -0.01 -0.05 12.08 29.63 0.36 0.31 16 5 O -0.16 -1.48 8.27 4.99 0.04 -1.44 16 6 C -0.08 -0.91 6.95 -36.80 -0.26 -1.17 16 7 C 0.61 8.24 7.82 -12.86 -0.10 8.14 16 8 O -0.52 -8.26 14.99 5.19 0.08 -8.18 16 9 N -0.61 -7.23 3.33 -172.07 -0.57 -7.80 16 10 C 0.11 1.00 5.14 -3.07 -0.02 0.99 16 11 C -0.09 -0.91 3.26 -88.65 -0.29 -1.20 16 12 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 13 C -0.14 -1.22 9.14 37.15 0.34 -0.88 16 14 C 0.08 0.95 2.77 -65.43 -0.18 0.77 16 15 H 0.10 1.11 7.82 -51.93 -0.41 0.71 16 16 N -0.65 -9.75 6.00 -105.58 -0.63 -10.38 16 17 C 0.05 0.81 6.04 -4.97 -0.03 0.78 16 18 C 0.44 10.21 7.82 -10.98 -0.09 10.12 16 19 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 20 N -0.56 -14.17 5.29 -10.96 -0.06 -14.22 16 21 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.46 -0.10 0.49 16 24 N -0.90 -24.54 13.05 55.50 0.72 -23.82 16 25 Si 0.93 21.08 29.55 -169.99 -5.02 16.05 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 C 0.07 0.91 6.49 -2.53 -0.02 0.89 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.98 6.45 -51.93 -0.33 0.64 16 33 H 0.16 0.76 8.06 -52.49 -0.42 0.34 16 34 H 0.21 0.44 8.06 -52.48 -0.42 0.02 16 35 H 0.07 0.64 7.79 -51.93 -0.40 0.23 16 36 H 0.07 0.66 7.35 -51.93 -0.38 0.28 16 37 H 0.05 0.46 8.13 -51.93 -0.42 0.04 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.35 5.52 8.00 -39.30 -0.31 5.21 16 41 H 0.09 1.38 8.09 -51.93 -0.42 0.95 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 44 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 45 H 0.08 1.08 8.04 -51.93 -0.42 0.67 16 46 H 0.07 0.92 7.80 -51.93 -0.41 0.51 16 LS Contribution 384.91 15.07 5.80 5.80 Total: -1.00 -33.28 384.91 -7.52 -40.81 By element: Atomic # 1 Polarization: 18.82 SS G_CDS: -6.72 Total: 12.10 kcal Atomic # 6 Polarization: 7.82 SS G_CDS: -1.24 Total: 6.58 kcal Atomic # 7 Polarization: -55.68 SS G_CDS: -0.54 Total: -56.22 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: 0.21 Total: -25.11 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.28 -7.52 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001214139931.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.452 kcal (2) G-P(sol) polarization free energy of solvation -33.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds