Wall clock time and date at job start Tue Mar 31 2020 19:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53126 * 109.52254 * 274.96049 * 9 8 6 11 11 C 1.53042 * 109.27464 * 182.44200 * 10 9 8 12 12 N 1.46842 * 109.52706 * 59.18336 * 11 10 9 13 13 C 1.46894 * 111.00111 * 174.15925 * 12 11 10 14 14 C 1.50697 * 109.47240 * 294.20350 * 13 12 11 15 15 O 1.21294 * 120.00054 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99759 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99632 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99945 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47012 * 60.00737 * 21 19 17 23 23 H 1.48505 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47384 * 300.00310 * 21 19 17 25 25 C 1.46858 * 111.19356 * 298.25650 * 12 11 10 26 26 C 1.53033 * 109.52347 * 61.74129 * 25 12 11 27 27 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 28 28 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 29 29 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 30 30 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 31 31 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.52499 * 35.14731 * 9 8 6 34 34 H 1.08999 * 109.50069 * 302.38186 * 10 9 8 35 35 H 1.08998 * 109.50344 * 62.50617 * 10 9 8 36 36 H 1.08995 * 109.46245 * 299.15928 * 11 10 9 37 37 H 1.09002 * 109.44852 * 179.19473 * 11 10 9 38 38 H 1.09005 * 109.47347 * 54.20931 * 13 12 11 39 39 H 1.09002 * 109.47288 * 174.20742 * 13 12 11 40 40 H 0.96994 * 120.00012 * 0.02562 * 16 14 13 41 41 H 0.97000 * 120.00282 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.45840 * 301.72076 * 25 12 11 43 43 H 1.09000 * 109.45150 * 181.75294 * 25 12 11 44 44 H 1.09002 * 109.50280 * 180.87919 * 26 25 12 45 45 H 1.08996 * 109.50430 * 60.76367 * 26 25 12 46 46 H 1.07999 * 126.64240 * 179.78042 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 7.6128 -2.1205 1.4416 11 6 8.9113 -2.9306 1.4456 12 7 9.9921 -2.1284 0.8587 13 6 11.2826 -2.8208 0.9717 14 6 11.6644 -2.9377 2.4248 15 8 10.9330 -2.4888 3.2821 16 7 12.8180 -3.5420 2.7720 17 6 13.1650 -3.6488 4.0941 18 1 12.5137 -3.2491 4.8573 19 6 14.3545 -4.2713 4.4521 20 7 15.1472 -4.7572 3.5233 21 14 14.8277 -4.4162 6.2533 22 1 13.7866 -5.1885 6.9779 23 1 16.1327 -5.1157 6.3676 24 1 14.9402 -3.0595 6.8463 25 6 9.6996 -1.7851 -0.5390 26 6 8.4248 -0.9408 -0.6022 27 6 2.3408 -1.1291 -0.0066 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 1.9769 2.1146 0.0004 32 1 6.1245 0.0584 -0.0014 33 1 7.0916 -2.6352 -0.5868 34 1 7.7449 -1.2183 2.0388 35 1 6.8074 -2.7220 1.8631 36 1 8.7741 -3.8394 0.8597 37 1 9.1708 -3.1951 2.4707 38 1 11.2001 -3.8167 0.5364 39 1 12.0469 -2.2540 0.4398 40 1 13.4027 -3.9013 2.0866 41 1 15.9778 -5.1915 3.7731 42 1 9.5589 -2.6993 -1.1156 43 1 10.5320 -1.2177 -0.9552 44 1 8.1994 -0.6994 -1.6410 45 1 8.5697 -0.0201 -0.0372 46 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228712722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:10 Heat of formation + Delta-G solvation = -56.137384 kcal Electronic energy + Delta-G solvation = -28078.479245 eV Core-core repulsion = 23969.591211 eV Total energy + Delta-G solvation = -4108.888034 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05403 -40.08193 -38.86129 -37.52637 -35.17886 -34.52835 -33.83132 -31.95639 -31.19742 -30.75195 -30.59920 -27.85442 -27.05048 -24.82079 -23.76762 -23.12120 -22.14525 -21.47311 -20.36199 -19.71444 -19.16360 -18.21813 -17.83462 -16.72083 -16.66397 -16.48650 -15.92131 -15.38399 -15.00938 -14.76176 -14.61701 -14.34345 -13.97849 -13.91730 -13.74163 -13.59443 -13.48802 -13.38271 -13.19535 -13.06245 -12.96437 -12.29616 -12.12554 -11.87262 -11.69687 -11.47955 -11.19252 -11.10906 -11.03800 -10.66298 -10.59197 -10.42185 -10.32934 -10.18920 -10.08584 -9.46491 -9.27306 -8.91328 -8.41056 -7.95302 -7.81689 -6.39412 -3.80120 0.74197 1.93340 2.34856 2.92140 2.96348 3.21758 3.27267 3.31696 3.92763 4.00342 4.26238 4.29168 4.37666 4.54912 4.64409 4.89682 4.94200 5.04565 5.07894 5.18262 5.24225 5.27479 5.34345 5.39625 5.43907 5.52962 5.54243 5.59087 5.64425 5.70098 5.81749 5.83863 5.97567 6.01260 6.01918 6.10677 6.19307 6.30980 6.43386 6.51379 6.55614 7.22365 7.32377 7.44482 7.57255 7.85373 8.08777 8.64455 9.20478 9.57106 10.09106 10.78259 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.001853 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.382378 B =15109.885203 C =15634.259226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.011 4.011 4 O -0.162 6.162 5 C -0.074 4.074 6 C 0.602 3.398 7 O -0.519 6.519 8 N -0.712 5.712 9 C 0.142 3.858 10 C -0.121 4.121 11 C 0.055 3.945 12 N -0.516 5.516 13 C 0.046 3.954 14 C 0.444 3.556 15 O -0.577 6.577 16 N -0.564 5.564 17 C -0.299 4.299 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.930 3.070 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.058 3.942 26 C -0.120 4.120 27 C -0.119 4.119 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.209 0.791 32 H 0.405 0.595 33 H 0.088 0.912 34 H 0.076 0.924 35 H 0.068 0.932 36 H 0.024 0.976 37 H 0.108 0.892 38 H 0.048 0.952 39 H 0.089 0.911 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.033 0.967 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.079 0.921 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.965 10.713 -12.764 28.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.080 4.080 4 O -0.057 6.057 5 C -0.126 4.126 6 C 0.388 3.612 7 O -0.396 6.396 8 N -0.362 5.362 9 C 0.039 3.961 10 C -0.160 4.160 11 C -0.073 4.073 12 N -0.241 5.241 13 C -0.085 4.085 14 C 0.229 3.771 15 O -0.461 6.461 16 N -0.201 5.201 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.179 4.179 20 N -0.544 5.544 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.070 4.070 26 C -0.158 4.158 27 C -0.140 4.140 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.226 0.774 32 H 0.239 0.761 33 H 0.106 0.894 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.043 0.957 37 H 0.126 0.874 38 H 0.066 0.934 39 H 0.107 0.893 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.098 0.902 44 H 0.089 0.911 45 H 0.098 0.902 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.998 10.643 -11.906 27.999 hybrid contribution 0.519 -0.600 -0.033 0.794 sum -22.480 10.043 -11.939 27.363 Atomic orbital electron populations 1.20189 0.88572 1.02965 1.02356 1.20506 0.97778 0.92410 1.08870 1.24209 0.79915 1.00070 1.03843 1.84056 1.29372 1.21699 1.70611 1.22121 0.96243 0.80539 1.13691 1.16556 0.81317 0.86411 0.76940 1.90900 1.85928 1.12222 1.50574 1.46018 1.05285 1.10814 1.74055 1.21231 0.82603 0.94275 0.98030 1.21935 0.97132 1.01510 0.95400 1.22215 0.89489 0.92899 1.02650 1.61538 1.01697 1.45316 1.15560 1.21831 0.91900 0.97530 0.97228 1.19749 0.83745 0.84103 0.89500 1.90484 1.52299 1.52096 1.51248 1.41862 1.18651 1.50914 1.08677 1.19648 1.04488 1.35115 0.83588 0.87979 1.25250 0.95937 0.96845 0.99893 1.69605 1.12710 1.38842 1.33211 0.85924 0.77592 0.78574 0.82157 1.19943 1.21010 1.19929 1.22028 0.97085 0.98333 0.89596 1.21835 0.93525 0.99693 1.00793 1.21865 0.90572 1.00644 1.00896 0.91241 0.91202 0.91398 0.77427 0.76066 0.89435 0.90566 0.91300 0.95746 0.87442 0.93430 0.89304 0.77502 0.91862 0.94909 0.90200 0.91057 0.90211 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.39 36.01 0.37 -0.04 16 2 C -0.19 -1.48 6.14 -104.93 -0.64 -2.13 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.28 16 4 O -0.16 -1.48 10.40 5.01 0.05 -1.43 16 5 C -0.07 -0.80 7.13 -36.79 -0.26 -1.07 16 6 C 0.60 7.59 7.75 -12.86 -0.10 7.49 16 7 O -0.52 -8.19 16.53 5.20 0.09 -8.10 16 8 N -0.71 -7.70 5.08 -55.00 -0.28 -7.98 16 9 C 0.14 1.71 2.52 -67.81 -0.17 1.54 16 10 C -0.12 -1.76 5.67 -26.64 -0.15 -1.91 16 11 C 0.06 0.93 5.10 -3.83 -0.02 0.91 16 12 N -0.52 -8.48 4.40 -236.11 -1.04 -9.52 16 13 C 0.05 0.82 5.45 -4.98 -0.03 0.80 16 14 C 0.44 10.43 7.46 -10.99 -0.08 10.35 16 15 O -0.58 -15.43 13.90 5.55 0.08 -15.36 16 16 N -0.56 -14.29 5.29 -10.96 -0.06 -14.35 16 17 C -0.30 -8.34 9.68 -14.93 -0.14 -8.48 16 18 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 19 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 20 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 21 Si 0.93 21.17 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.06 0.72 5.46 -3.83 -0.02 0.70 16 26 C -0.12 -1.26 5.57 -26.65 -0.15 -1.41 16 27 C -0.12 -1.18 10.57 -39.39 -0.42 -1.60 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.21 0.55 8.06 -52.48 -0.42 0.13 16 32 H 0.40 3.51 8.36 -40.82 -0.34 3.16 16 33 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.11 2.20 5.78 -51.93 -0.30 1.90 16 38 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 39 H 0.09 1.41 7.99 -51.93 -0.41 0.99 16 40 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 41 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 42 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 43 H 0.08 0.89 8.02 -51.93 -0.42 0.47 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 46 H 0.16 1.50 8.06 -52.49 -0.42 1.07 16 LS Contribution 384.51 15.07 5.79 5.79 Total: -1.00 -33.42 384.51 -7.99 -41.41 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -6.77 Total: 11.29 kcal Atomic # 6 Polarization: 7.51 SS G_CDS: -1.55 Total: 5.95 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -0.65 Total: -55.71 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.22 Total: -24.89 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.42 -7.99 -41.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228712722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.726 kcal (2) G-P(sol) polarization free energy of solvation -33.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds