Wall clock time and date at job start Tue Mar 31 2020 19:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35129 * 126.43940 * 2 1 4 4 O 1.33929 * 108.76678 * 180.02562 * 3 2 1 5 5 C 1.34909 * 109.38468 * 0.02562 * 4 3 2 6 6 C 1.46658 * 125.98840 * 179.97438 * 5 4 3 7 7 O 1.21693 * 120.00161 * 180.02562 * 6 5 4 8 8 N 1.34777 * 119.99639 * 0.02562 * 6 5 4 9 9 C 1.46499 * 119.99665 * 179.72443 * 8 6 5 10 10 C 1.53126 * 109.52254 * 274.96049 * 9 8 6 11 11 C 1.53042 * 109.27464 * 182.44200 * 10 9 8 12 12 N 1.46842 * 109.52706 * 59.18336 * 11 10 9 13 13 C 1.46894 * 111.00111 * 174.15925 * 12 11 10 14 14 C 1.50697 * 109.47240 * 294.20350 * 13 12 11 15 15 O 1.21294 * 120.00054 * 0.02562 * 14 13 12 16 16 N 1.34778 * 120.00025 * 179.97438 * 14 13 12 17 17 C 1.37104 * 119.99759 * 180.02562 * 16 14 13 18 18 H 1.08000 * 119.99632 * 0.02562 * 17 16 14 19 19 C 1.38947 * 119.99945 * 180.02562 * 17 16 14 20 20 N 1.31415 * 120.00014 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99987 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47012 * 60.00737 * 21 19 17 23 23 H 1.48505 * 109.47071 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47384 * 300.00310 * 21 19 17 25 25 C 1.46858 * 111.19356 * 298.25650 * 12 11 10 26 26 C 1.53033 * 109.52347 * 61.74129 * 25 12 11 27 27 C 1.36549 * 108.02412 * 0.22292 * 5 4 3 28 28 H 1.08999 * 109.47086 * 89.97980 * 1 2 3 29 29 H 1.09002 * 109.46978 * 209.97112 * 1 2 3 30 30 H 1.08995 * 109.47714 * 329.97469 * 1 2 3 31 31 H 1.08005 * 125.61727 * 0.02562 * 3 2 1 32 32 H 0.97001 * 120.00485 * 0.02562 * 8 6 5 33 33 H 1.08999 * 109.52499 * 35.14731 * 9 8 6 34 34 H 1.08999 * 109.50069 * 302.38186 * 10 9 8 35 35 H 1.08998 * 109.50344 * 62.50617 * 10 9 8 36 36 H 1.08995 * 109.46245 * 299.15928 * 11 10 9 37 37 H 1.09002 * 109.44852 * 179.19473 * 11 10 9 38 38 H 1.09005 * 109.47347 * 54.20931 * 13 12 11 39 39 H 1.09002 * 109.47288 * 174.20742 * 13 12 11 40 40 H 0.96994 * 120.00012 * 0.02562 * 16 14 13 41 41 H 0.97000 * 120.00282 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.45840 * 301.72076 * 25 12 11 43 43 H 1.09000 * 109.45150 * 181.75294 * 25 12 11 44 44 H 1.09002 * 109.50280 * 180.87919 * 26 25 12 45 45 H 1.08996 * 109.50430 * 60.76367 * 26 25 12 46 46 H 1.07999 * 126.64240 * 179.78042 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0871 0.0000 4 8 3.5857 0.6805 -0.0006 5 6 3.6261 -0.6680 -0.0015 6 6 4.8379 -1.4939 -0.0029 7 8 4.7472 -2.7075 -0.0041 8 7 6.0521 -0.9089 -0.0028 9 6 7.2627 -1.7339 0.0020 10 6 7.6128 -2.1205 1.4416 11 6 8.9113 -2.9306 1.4456 12 7 9.9921 -2.1284 0.8587 13 6 11.2826 -2.8208 0.9717 14 6 11.6644 -2.9377 2.4248 15 8 10.9330 -2.4888 3.2821 16 7 12.8180 -3.5420 2.7720 17 6 13.1650 -3.6488 4.0941 18 1 12.5137 -3.2491 4.8573 19 6 14.3545 -4.2713 4.4521 20 7 15.1472 -4.7572 3.5233 21 14 14.8277 -4.4162 6.2533 22 1 13.7866 -5.1885 6.9779 23 1 16.1327 -5.1157 6.3676 24 1 14.9402 -3.0595 6.8463 25 6 9.6996 -1.7851 -0.5390 26 6 8.4248 -0.9408 -0.6022 27 6 2.3408 -1.1291 -0.0066 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3633 -0.8903 0.5134 30 1 -0.3634 0.8897 0.5142 31 1 1.9769 2.1146 0.0004 32 1 6.1245 0.0584 -0.0014 33 1 7.0916 -2.6352 -0.5868 34 1 7.7449 -1.2183 2.0388 35 1 6.8074 -2.7220 1.8631 36 1 8.7741 -3.8394 0.8597 37 1 9.1708 -3.1951 2.4707 38 1 11.2001 -3.8167 0.5364 39 1 12.0469 -2.2540 0.4398 40 1 13.4027 -3.9013 2.0866 41 1 15.9778 -5.1915 3.7731 42 1 9.5589 -2.6993 -1.1156 43 1 10.5320 -1.2177 -0.9552 44 1 8.1994 -0.6994 -1.6410 45 1 8.5697 -0.0201 -0.0372 46 1 2.0267 -2.1624 -0.0119 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228712722.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:09 Heat of formation + Delta-G solvation = -81.271701 kcal Electronic energy + Delta-G solvation = -28079.569151 eV Core-core repulsion = 23969.591211 eV Total energy + Delta-G solvation = -4109.977939 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.71630 -41.15454 -40.33866 -39.01986 -36.35667 -35.78308 -35.14535 -33.35112 -32.92406 -31.83992 -31.41200 -28.84587 -28.05985 -26.45502 -24.94140 -24.25071 -23.20885 -22.17442 -21.35382 -21.00283 -20.62756 -19.85847 -18.97482 -17.75573 -17.50399 -17.42187 -17.31424 -16.69170 -16.42388 -16.33446 -15.81128 -15.64379 -15.35249 -15.32883 -14.87801 -14.55648 -14.40733 -14.27230 -14.08707 -13.95458 -13.77203 -13.53011 -13.48762 -13.19064 -12.96569 -12.80049 -12.57286 -12.44919 -12.38059 -12.20273 -12.11632 -11.90046 -11.67155 -11.43263 -11.36631 -10.75864 -10.36303 -10.17158 -9.97639 -9.56443 -9.19425 -8.45092 -5.93484 -0.01795 1.31956 1.39867 1.41407 1.52237 1.60945 2.03285 2.07850 2.14447 2.29144 2.76969 3.21710 3.39058 3.58017 3.74350 3.80358 3.83383 4.03013 4.05752 4.18443 4.28757 4.32286 4.37134 4.47107 4.50477 4.56445 4.59721 4.65106 4.74373 4.86526 4.87693 4.92205 4.96955 5.02298 5.05029 5.07932 5.10223 5.24586 5.35898 5.41938 5.49761 5.81230 5.89880 6.08315 6.25307 6.38513 6.62852 6.94925 7.14799 7.58857 8.15136 8.72036 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.026499 B = 0.001853 C = 0.001791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.382378 B =15109.885203 C =15634.259226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.208 4.208 3 C 0.008 3.992 4 O -0.166 6.166 5 C -0.103 4.103 6 C 0.600 3.400 7 O -0.561 6.561 8 N -0.700 5.700 9 C 0.150 3.850 10 C -0.112 4.112 11 C 0.061 3.939 12 N -0.531 5.531 13 C 0.058 3.942 14 C 0.440 3.560 15 O -0.614 6.614 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.274 1.274 23 H -0.270 1.270 24 H -0.272 1.272 25 C 0.056 3.944 26 C -0.110 4.110 27 C -0.126 4.126 28 H 0.078 0.922 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.254 0.746 32 H 0.417 0.583 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.054 0.946 36 H 0.030 0.970 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.116 0.884 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.044 0.956 43 H 0.101 0.899 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.731 12.638 -14.270 30.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.062 4.062 4 O -0.061 6.061 5 C -0.155 4.155 6 C 0.388 3.612 7 O -0.442 6.442 8 N -0.350 5.350 9 C 0.046 3.954 10 C -0.151 4.151 11 C -0.068 4.068 12 N -0.257 5.257 13 C -0.073 4.073 14 C 0.228 3.772 15 O -0.500 6.500 16 N -0.212 5.212 17 C -0.462 4.462 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.072 4.072 26 C -0.148 4.148 27 C -0.147 4.147 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.269 0.731 32 H 0.254 0.746 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.134 0.866 40 H 0.230 0.770 41 H 0.086 0.914 42 H 0.062 0.938 43 H 0.119 0.881 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -23.757 12.598 -13.446 30.065 hybrid contribution 0.632 -1.134 0.422 1.365 sum -23.125 11.464 -13.024 28.910 Atomic orbital electron populations 1.20260 0.86627 1.03832 1.03186 1.20851 0.99182 0.91717 1.09177 1.25137 0.78690 1.01698 1.00639 1.84047 1.30747 1.20591 1.70705 1.21755 0.95646 0.81408 1.16660 1.16798 0.82158 0.86145 0.76113 1.90867 1.86634 1.14016 1.52683 1.45869 1.04492 1.11322 1.73293 1.21058 0.83774 0.94694 0.95879 1.21800 0.95578 1.00389 0.97318 1.22006 0.90673 0.93805 1.00274 1.61508 1.00745 1.44813 1.18600 1.21727 0.93429 0.99326 0.92857 1.20827 0.82408 0.82105 0.91902 1.90465 1.53137 1.53139 1.53287 1.41928 1.19535 1.51783 1.07985 1.19611 1.05214 1.36874 0.84533 0.90418 1.26007 0.95339 0.95929 1.03967 1.69665 1.12929 1.38753 1.34773 0.85011 0.77653 0.78566 0.77228 1.19907 1.19450 1.19732 1.22205 0.98701 0.99370 0.86932 1.21808 0.91618 0.98901 1.02516 1.22098 0.91028 1.01377 1.00194 0.90377 0.91519 0.89407 0.73060 0.74595 0.90354 0.91562 0.92768 0.95235 0.91879 0.91708 0.86570 0.77027 0.91353 0.93818 0.88098 0.87910 0.89932 0.82822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.62 10.39 71.24 0.74 0.12 16 2 C -0.21 -2.79 6.14 -20.06 -0.12 -2.91 16 3 C 0.01 0.08 12.00 67.10 0.81 0.89 16 4 O -0.17 -2.74 10.40 -4.97 -0.05 -2.79 16 5 C -0.10 -2.22 7.13 24.07 0.17 -2.05 16 6 C 0.60 15.40 7.75 86.44 0.67 16.07 16 7 O -0.56 -18.50 16.53 -4.33 -0.07 -18.57 16 8 N -0.70 -14.72 5.08 -446.14 -2.27 -16.98 16 9 C 0.15 3.51 2.52 45.07 0.11 3.63 16 10 C -0.11 -3.35 5.67 30.65 0.17 -3.18 16 11 C 0.06 2.10 5.10 86.33 0.44 2.55 16 12 N -0.53 -17.02 4.40 -900.92 -3.96 -20.98 16 13 C 0.06 2.00 5.45 85.56 0.47 2.46 16 14 C 0.44 21.17 7.46 87.66 0.65 21.82 16 15 O -0.61 -34.24 13.90 -3.07 -0.04 -34.29 16 16 N -0.57 -29.80 5.29 -306.98 -1.62 -31.43 16 17 C -0.33 -19.12 9.68 84.04 0.81 -18.31 16 18 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 19 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 20 N -0.92 -50.07 13.05 21.66 0.28 -49.79 16 21 Si 0.99 43.55 29.55 68.60 2.03 45.58 16 22 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 25 C 0.06 1.22 5.46 86.32 0.47 1.69 16 26 C -0.11 -2.03 5.57 30.64 0.17 -1.86 16 27 C -0.13 -2.48 10.57 22.39 0.24 -2.25 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.25 0.15 8.06 -2.91 -0.02 0.12 16 32 H 0.42 6.65 8.36 -92.71 -0.78 5.87 16 33 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 34 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 2.75 5.78 -2.39 -0.01 2.73 16 38 H 0.07 2.05 8.12 -2.38 -0.02 2.03 16 39 H 0.12 3.41 7.99 -2.39 -0.02 3.39 16 40 H 0.40 19.45 7.90 -92.71 -0.73 18.72 16 41 H 0.28 14.16 8.31 -92.71 -0.77 13.39 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.10 1.85 8.02 -2.39 -0.02 1.83 16 44 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 Total: -1.00 -76.06 384.51 0.08 -75.98 By element: Atomic # 1 Polarization: 35.31 SS G_CDS: -0.49 Total: 34.82 kcal Atomic # 6 Polarization: 12.18 SS G_CDS: 6.27 Total: 18.45 kcal Atomic # 7 Polarization: -111.61 SS G_CDS: -7.57 Total: -119.18 kcal Atomic # 8 Polarization: -55.48 SS G_CDS: -0.17 Total: -55.65 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 2.03 Total: 45.58 kcal Total: -76.06 0.08 -75.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228712722.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.290 kcal (2) G-P(sol) polarization free energy of solvation -76.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds