Wall clock time and date at job start Tue Mar 31 2020 19:08:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.40366 * 126.64587 * 2 1
4 4 C 1.35129 * 107.11400 * 179.97438 * 3 2 1
5 5 O 1.33933 * 108.76899 * 0.02562 * 4 3 2
6 6 C 1.34916 * 109.38334 * 0.02562 * 5 4 3
7 7 C 1.46661 * 125.98645 * 180.02562 * 6 5 4
8 8 O 1.21698 * 119.99798 * 172.53896 * 7 6 5
9 9 N 1.34769 * 120.00227 * 352.53951 * 7 6 5
10 10 C 1.46502 * 119.99775 * 3.54223 * 9 7 6
11 11 C 1.46494 * 120.00226 * 183.53763 * 9 7 6
12 12 C 1.53009 * 109.47090 * 90.00216 * 11 9 7
13 13 H 1.08998 * 112.74172 * 284.23103 * 12 11 9
14 14 C 1.53510 * 113.47535 * 153.38086 * 12 11 9
15 15 C 1.53512 * 83.57336 * 219.20909 * 14 12 11
16 16 N 1.47476 * 113.47613 * 54.99773 * 12 11 9
17 17 C 1.46892 * 111.00260 * 253.47364 * 16 12 11
18 18 C 1.50701 * 109.47526 * 190.00145 * 17 16 12
19 19 O 1.21296 * 119.99489 * 359.97438 * 18 17 16
20 20 N 1.34774 * 120.00489 * 180.02562 * 18 17 16
21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17
22 22 H 1.07997 * 120.00270 * 359.97438 * 21 20 18
23 23 C 1.38950 * 119.99325 * 179.97438 * 21 20 18
24 24 N 1.31408 * 120.00670 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99339 * 179.97438 * 23 21 20
26 26 H 1.48499 * 109.47372 * 359.97438 * 25 23 21
27 27 H 1.48504 * 109.47093 * 119.99814 * 25 23 21
28 28 H 1.48504 * 109.46929 * 239.99458 * 25 23 21
29 29 H 1.08995 * 109.47593 * 270.02409 * 1 2 3
30 30 H 1.09008 * 109.47050 * 30.02379 * 1 2 3
31 31 H 1.09000 * 109.47110 * 150.02099 * 1 2 3
32 32 H 1.07998 * 126.44102 * 0.02789 * 3 2 1
33 33 H 1.07996 * 125.61739 * 180.27086 * 4 3 2
34 34 H 1.08999 * 109.47371 * 83.93446 * 10 9 7
35 35 H 1.09010 * 109.46849 * 203.93643 * 10 9 7
36 36 H 1.08999 * 109.46964 * 323.93005 * 10 9 7
37 37 H 1.09003 * 109.47744 * 209.99797 * 11 9 7
38 38 H 1.08995 * 109.47362 * 330.00551 * 11 9 7
39 39 H 1.08991 * 114.17494 * 332.85415 * 14 12 11
40 40 H 1.09003 * 114.17034 * 105.56478 * 14 12 11
41 41 H 1.09001 * 113.47389 * 271.25906 * 15 14 12
42 42 H 1.08996 * 113.53446 * 140.80242 * 15 14 12
43 43 H 1.08995 * 109.47033 * 310.00050 * 17 16 12
44 44 H 1.09006 * 109.47542 * 70.00242 * 17 16 12
45 45 H 0.96996 * 120.00136 * 359.97438 * 20 18 17
46 46 H 0.97001 * 120.00062 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3448 1.1262 0.0000
4 6 3.6183 0.6744 0.0006
5 8 3.6005 -0.6648 0.0004
6 6 2.3220 -1.0956 -0.0009
7 6 1.8842 -2.4953 -0.0010
8 8 0.7051 -2.7641 0.1346
9 7 2.7877 -3.4839 -0.1513
10 6 4.2151 -3.1650 -0.2367
11 6 2.3426 -4.8774 -0.2292
12 6 2.0760 -5.2468 -1.6899
13 1 1.1417 -4.8301 -2.0661
14 6 2.2404 -6.7449 -1.9816
15 6 2.8737 -6.2450 -3.2876
16 7 3.2280 -5.0020 -2.5775
17 6 2.9974 -3.8262 -3.4272
18 6 4.0717 -3.7496 -4.4813
19 8 4.9440 -4.5915 -4.5205
20 7 4.0639 -2.7451 -5.3798
21 6 5.0410 -2.6758 -6.3391
22 1 5.8171 -3.4259 -6.3745
23 6 5.0325 -1.6404 -7.2657
24 7 4.0878 -0.7280 -7.2230
25 14 6.3642 -1.5456 -8.5723
26 1 7.3034 -2.6837 -8.4053
27 1 5.7418 -1.6103 -9.9190
28 1 7.1062 -0.2671 -8.4308
29 1 -0.3634 0.0004 1.0276
30 1 -0.3633 0.8898 -0.5142
31 1 -0.3633 -0.8902 -0.5135
32 1 2.0306 2.1595 0.0004
33 1 4.5046 1.2916 0.0049
34 1 4.6252 -3.0624 0.7680
35 1 4.7356 -3.9661 -0.7616
36 1 4.3464 -2.2293 -0.7801
37 1 3.1171 -5.5295 0.1748
38 1 1.4269 -4.9993 0.3493
39 1 2.9356 -7.2557 -1.3155
40 1 1.2999 -7.2790 -2.1175
41 1 2.1521 -6.0957 -4.0908
42 1 3.7397 -6.8274 -3.6021
43 1 2.0226 -3.9105 -3.9074
44 1 3.0242 -2.9246 -2.8151
45 1 3.3666 -2.0716 -5.3483
46 1 4.0818 -0.0054 -7.8701
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001230762180.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:56
Heat of formation + Delta-G solvation = -4.979441 kcal
Electronic energy + Delta-G solvation = -30115.219196 eV
Core-core repulsion = 26008.549537 eV
Total energy + Delta-G solvation = -4106.669659 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.77083 -40.47073 -39.15244 -37.69756 -35.64846 -34.00011 -33.90149 -31.39772
-31.00132 -30.39992 -28.92373 -27.65366 -26.23467 -25.77259 -23.79475 -23.69864
-22.16923 -21.10420 -19.68693 -19.25807 -19.24474 -17.89515 -17.47925 -16.63856
-16.45298 -16.15152 -15.83100 -15.69576 -15.47147 -14.56085 -14.36226 -14.17451
-13.86145 -13.75849 -13.56336 -13.35245 -13.27055 -13.14893 -12.81512 -12.64751
-12.53442 -12.25776 -11.97293 -11.82805 -11.65977 -11.52683 -11.43455 -11.32594
-11.08641 -10.78616 -10.46775 -10.35195 -10.22519 -10.06819 -9.75352 -9.51409
-8.96886 -8.68644 -8.37276 -8.23010 -7.96437 -6.41734 -3.82710 1.04275
2.29528 2.62556 3.05182 3.15256 3.19124 3.25759 3.32955 3.89967
4.06018 4.26006 4.43840 4.57069 4.72003 4.78070 4.89618 5.03129
5.15504 5.23676 5.35294 5.37894 5.41463 5.47863 5.49254 5.55331
5.62813 5.65030 5.66290 5.75669 5.77402 5.81444 5.88856 5.94851
6.06241 6.11233 6.18931 6.27558 6.32593 6.34132 6.46547 6.63841
6.85202 7.24118 7.34326 7.54760 8.02862 8.05660 8.61183 9.17754
9.54228 10.05878 10.76091
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.009424 B = 0.004183 C = 0.003201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2970.485613 B = 6691.554827 C = 8745.024171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.091 4.091
2 C -0.088 4.088
3 C -0.226 4.226
4 C -0.007 4.007
5 O -0.154 6.154
6 C -0.084 4.084
7 C 0.599 3.401
8 O -0.527 6.527
9 N -0.595 5.595
10 C 0.075 3.925
11 C 0.137 3.863
12 C 0.003 3.997
13 H 0.079 0.921
14 C -0.138 4.138
15 C 0.013 3.987
16 N -0.434 5.434
17 C 0.014 3.986
18 C 0.446 3.554
19 O -0.578 6.578
20 N -0.565 5.565
21 C -0.297 4.297
22 H 0.103 0.897
23 C 0.022 3.978
24 N -0.902 5.902
25 Si 0.928 3.072
26 H -0.268 1.268
27 H -0.282 1.282
28 H -0.281 1.281
29 H 0.072 0.928
30 H 0.066 0.934
31 H 0.083 0.917
32 H 0.154 0.846
33 H 0.208 0.792
34 H 0.052 0.948
35 H 0.094 0.906
36 H 0.080 0.920
37 H 0.086 0.914
38 H 0.087 0.913
39 H 0.093 0.907
40 H 0.074 0.926
41 H 0.063 0.937
42 H 0.091 0.909
43 H 0.051 0.949
44 H 0.083 0.917
45 H 0.391 0.609
46 H 0.271 0.729
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.709 -0.491 16.475 17.443
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.148 4.148
2 C -0.091 4.091
3 C -0.245 4.245
4 C -0.077 4.077
5 O -0.050 6.050
6 C -0.136 4.136
7 C 0.388 3.612
8 O -0.406 6.406
9 N -0.325 5.325
10 C -0.067 4.067
11 C 0.014 3.986
12 C -0.108 4.108
13 H 0.097 0.903
14 C -0.176 4.176
15 C -0.116 4.116
16 N -0.156 5.156
17 C -0.118 4.118
18 C 0.231 3.769
19 O -0.462 6.462
20 N -0.202 5.202
21 C -0.427 4.427
22 H 0.121 0.879
23 C -0.179 4.179
24 N -0.543 5.543
25 Si 0.755 3.245
26 H -0.192 1.192
27 H -0.208 1.208
28 H -0.207 1.207
29 H 0.090 0.910
30 H 0.085 0.915
31 H 0.102 0.898
32 H 0.171 0.829
33 H 0.225 0.775
34 H 0.070 0.930
35 H 0.113 0.887
36 H 0.098 0.902
37 H 0.104 0.896
38 H 0.106 0.894
39 H 0.112 0.888
40 H 0.092 0.908
41 H 0.081 0.919
42 H 0.109 0.891
43 H 0.069 0.931
44 H 0.101 0.899
45 H 0.224 0.776
46 H 0.081 0.919
Dipole moment (debyes) X Y Z Total
from point charges -4.808 -1.139 16.649 17.366
hybrid contribution -0.512 1.135 -1.271 1.780
sum -5.319 -0.004 15.377 16.271
Atomic orbital electron populations
1.20372 0.88377 1.03421 1.02595 1.20607 0.97541 0.91062 0.99910
1.21710 0.92465 1.00064 1.10262 1.24450 0.99960 0.81309 1.01945
1.84337 1.28041 1.22130 1.70489 1.21798 0.81626 0.94692 1.15437
1.16691 0.85392 0.82032 0.77121 1.90817 1.16108 1.82252 1.51435
1.47608 1.07689 1.06417 1.70794 1.22098 0.79457 1.03636 1.01512
1.21524 1.01160 0.80625 0.95253 1.23933 0.95066 0.96393 0.95438
0.90330 1.23206 1.01214 0.94650 0.98559 1.23570 1.00033 0.92880
0.95149 1.68732 1.34187 1.00984 1.11705 1.22426 0.97594 0.96033
0.95741 1.19657 0.88207 0.84607 0.84411 1.90516 1.39410 1.41388
1.74898 1.41885 1.26910 1.24127 1.27262 1.19735 1.06039 1.10408
1.06512 0.87904 1.25257 0.98174 0.95577 0.98935 1.69626 1.33237
1.14091 1.37351 0.85818 0.80367 0.78292 0.79975 1.19218 1.20769
1.20749 0.90963 0.91531 0.89835 0.82851 0.77517 0.92966 0.88701
0.90173 0.89583 0.89430 0.88845 0.90756 0.91878 0.89050 0.93135
0.89880 0.77602 0.91945
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -1.07 9.75 36.01 0.35 -0.72 16
2 C -0.09 -1.17 6.20 -104.43 -0.65 -1.81 16
3 C -0.23 -2.51 10.83 -39.89 -0.43 -2.94 16
4 C -0.01 -0.07 12.08 29.63 0.36 0.29 16
5 O -0.15 -2.02 7.30 4.99 0.04 -1.99 16
6 C -0.08 -1.21 6.76 -36.80 -0.25 -1.46 16
7 C 0.60 8.99 7.64 -12.86 -0.10 8.89 16
8 O -0.53 -8.68 14.40 5.19 0.07 -8.61 16
9 N -0.59 -8.00 2.70 -183.13 -0.50 -8.50 16
10 C 0.08 0.97 9.06 59.85 0.54 1.52 16
11 C 0.14 1.64 5.56 -4.04 -0.02 1.61 16
12 C 0.00 0.03 3.37 -71.44 -0.24 -0.21 16
13 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16
14 C -0.14 -1.56 8.00 -26.20 -0.21 -1.77 16
15 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16
16 N -0.43 -7.09 4.74 -237.97 -1.13 -8.22 16
17 C 0.01 0.27 5.31 -4.98 -0.03 0.24 16
18 C 0.45 10.69 7.62 -10.99 -0.08 10.60 16
19 O -0.58 -15.60 15.34 5.54 0.09 -15.52 16
20 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16
21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16
22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16
23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16
24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16
25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16
26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16
27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16
28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16
29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16
30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16
31 H 0.08 1.12 6.62 -51.93 -0.34 0.77 16
32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16
33 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16
34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16
35 H 0.09 1.33 7.38 -51.92 -0.38 0.94 16
36 H 0.08 1.14 5.42 -51.93 -0.28 0.86 16
37 H 0.09 0.89 7.81 -51.93 -0.41 0.48 16
38 H 0.09 1.02 7.37 -51.93 -0.38 0.63 16
39 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16
40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16
41 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16
42 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16
43 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16
44 H 0.08 1.55 7.85 -51.93 -0.41 1.14 16
45 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16
46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16
LS Contribution 381.34 15.07 5.75 5.75
Total: -1.00 -33.07 381.34 -7.69 -40.77
By element:
Atomic # 1 Polarization: 19.15 SS G_CDS: -6.60 Total: 12.55 kcal
Atomic # 6 Polarization: 7.45 SS G_CDS: -1.05 Total: 6.40 kcal
Atomic # 7 Polarization: -54.48 SS G_CDS: -0.96 Total: -55.43 kcal
Atomic # 8 Polarization: -26.31 SS G_CDS: 0.20 Total: -26.11 kcal
Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal
Total LS contribution 5.75 Total: 5.75 kcal
Total: -33.07 -7.69 -40.77 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230762180.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 35.786 kcal
(2) G-P(sol) polarization free energy of solvation -33.074 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.711 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal
(6) G-S(sol) free energy of system = (1) + (5) -4.979 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds