Wall clock time and date at job start Tue Mar 31 2020 19:08:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40366 * 126.64587 * 2 1 4 4 C 1.35129 * 107.11400 * 179.97438 * 3 2 1 5 5 O 1.33933 * 108.76899 * 0.02562 * 4 3 2 6 6 C 1.34916 * 109.38334 * 0.02562 * 5 4 3 7 7 C 1.46661 * 125.98645 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99798 * 172.53896 * 7 6 5 9 9 N 1.34769 * 120.00227 * 352.53951 * 7 6 5 10 10 C 1.46502 * 119.99775 * 3.54223 * 9 7 6 11 11 C 1.46494 * 120.00226 * 183.53763 * 9 7 6 12 12 C 1.53009 * 109.47090 * 90.00216 * 11 9 7 13 13 H 1.08998 * 112.74172 * 284.23103 * 12 11 9 14 14 C 1.53510 * 113.47535 * 153.38086 * 12 11 9 15 15 C 1.53512 * 83.57336 * 219.20909 * 14 12 11 16 16 N 1.47476 * 113.47613 * 54.99773 * 12 11 9 17 17 C 1.46892 * 111.00260 * 253.47364 * 16 12 11 18 18 C 1.50701 * 109.47526 * 190.00145 * 17 16 12 19 19 O 1.21296 * 119.99489 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00489 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00270 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99325 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00670 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99339 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47372 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47093 * 119.99814 * 25 23 21 28 28 H 1.48504 * 109.46929 * 239.99458 * 25 23 21 29 29 H 1.08995 * 109.47593 * 270.02409 * 1 2 3 30 30 H 1.09008 * 109.47050 * 30.02379 * 1 2 3 31 31 H 1.09000 * 109.47110 * 150.02099 * 1 2 3 32 32 H 1.07998 * 126.44102 * 0.02789 * 3 2 1 33 33 H 1.07996 * 125.61739 * 180.27086 * 4 3 2 34 34 H 1.08999 * 109.47371 * 83.93446 * 10 9 7 35 35 H 1.09010 * 109.46849 * 203.93643 * 10 9 7 36 36 H 1.08999 * 109.46964 * 323.93005 * 10 9 7 37 37 H 1.09003 * 109.47744 * 209.99797 * 11 9 7 38 38 H 1.08995 * 109.47362 * 330.00551 * 11 9 7 39 39 H 1.08991 * 114.17494 * 332.85415 * 14 12 11 40 40 H 1.09003 * 114.17034 * 105.56478 * 14 12 11 41 41 H 1.09001 * 113.47389 * 271.25906 * 15 14 12 42 42 H 1.08996 * 113.53446 * 140.80242 * 15 14 12 43 43 H 1.08995 * 109.47033 * 310.00050 * 17 16 12 44 44 H 1.09006 * 109.47542 * 70.00242 * 17 16 12 45 45 H 0.96996 * 120.00136 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6648 0.0004 6 6 2.3220 -1.0956 -0.0009 7 6 1.8842 -2.4953 -0.0010 8 8 0.7051 -2.7641 0.1346 9 7 2.7877 -3.4839 -0.1513 10 6 4.2151 -3.1650 -0.2367 11 6 2.3426 -4.8774 -0.2292 12 6 2.0760 -5.2468 -1.6899 13 1 1.1417 -4.8301 -2.0661 14 6 2.2404 -6.7449 -1.9816 15 6 2.8737 -6.2450 -3.2876 16 7 3.2280 -5.0020 -2.5775 17 6 2.9974 -3.8262 -3.4272 18 6 4.0717 -3.7496 -4.4813 19 8 4.9440 -4.5915 -4.5205 20 7 4.0639 -2.7451 -5.3798 21 6 5.0410 -2.6758 -6.3391 22 1 5.8171 -3.4259 -6.3745 23 6 5.0325 -1.6404 -7.2657 24 7 4.0878 -0.7280 -7.2230 25 14 6.3642 -1.5456 -8.5723 26 1 7.3034 -2.6837 -8.4053 27 1 5.7418 -1.6103 -9.9190 28 1 7.1062 -0.2671 -8.4308 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 2.0306 2.1595 0.0004 33 1 4.5046 1.2916 0.0049 34 1 4.6252 -3.0624 0.7680 35 1 4.7356 -3.9661 -0.7616 36 1 4.3464 -2.2293 -0.7801 37 1 3.1171 -5.5295 0.1748 38 1 1.4269 -4.9993 0.3493 39 1 2.9356 -7.2557 -1.3155 40 1 1.2999 -7.2790 -2.1175 41 1 2.1521 -6.0957 -4.0908 42 1 3.7397 -6.8274 -3.6021 43 1 2.0226 -3.9105 -3.9074 44 1 3.0242 -2.9246 -2.8151 45 1 3.3666 -2.0716 -5.3483 46 1 4.0818 -0.0054 -7.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001230762180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:56 Heat of formation + Delta-G solvation = -4.979441 kcal Electronic energy + Delta-G solvation = -30115.219196 eV Core-core repulsion = 26008.549537 eV Total energy + Delta-G solvation = -4106.669659 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.77083 -40.47073 -39.15244 -37.69756 -35.64846 -34.00011 -33.90149 -31.39772 -31.00132 -30.39992 -28.92373 -27.65366 -26.23467 -25.77259 -23.79475 -23.69864 -22.16923 -21.10420 -19.68693 -19.25807 -19.24474 -17.89515 -17.47925 -16.63856 -16.45298 -16.15152 -15.83100 -15.69576 -15.47147 -14.56085 -14.36226 -14.17451 -13.86145 -13.75849 -13.56336 -13.35245 -13.27055 -13.14893 -12.81512 -12.64751 -12.53442 -12.25776 -11.97293 -11.82805 -11.65977 -11.52683 -11.43455 -11.32594 -11.08641 -10.78616 -10.46775 -10.35195 -10.22519 -10.06819 -9.75352 -9.51409 -8.96886 -8.68644 -8.37276 -8.23010 -7.96437 -6.41734 -3.82710 1.04275 2.29528 2.62556 3.05182 3.15256 3.19124 3.25759 3.32955 3.89967 4.06018 4.26006 4.43840 4.57069 4.72003 4.78070 4.89618 5.03129 5.15504 5.23676 5.35294 5.37894 5.41463 5.47863 5.49254 5.55331 5.62813 5.65030 5.66290 5.75669 5.77402 5.81444 5.88856 5.94851 6.06241 6.11233 6.18931 6.27558 6.32593 6.34132 6.46547 6.63841 6.85202 7.24118 7.34326 7.54760 8.02862 8.05660 8.61183 9.17754 9.54228 10.05878 10.76091 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004183 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.485613 B = 6691.554827 C = 8745.024171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.088 4.088 3 C -0.226 4.226 4 C -0.007 4.007 5 O -0.154 6.154 6 C -0.084 4.084 7 C 0.599 3.401 8 O -0.527 6.527 9 N -0.595 5.595 10 C 0.075 3.925 11 C 0.137 3.863 12 C 0.003 3.997 13 H 0.079 0.921 14 C -0.138 4.138 15 C 0.013 3.987 16 N -0.434 5.434 17 C 0.014 3.986 18 C 0.446 3.554 19 O -0.578 6.578 20 N -0.565 5.565 21 C -0.297 4.297 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.281 1.281 29 H 0.072 0.928 30 H 0.066 0.934 31 H 0.083 0.917 32 H 0.154 0.846 33 H 0.208 0.792 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.087 0.913 39 H 0.093 0.907 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.051 0.949 44 H 0.083 0.917 45 H 0.391 0.609 46 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.709 -0.491 16.475 17.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.091 4.091 3 C -0.245 4.245 4 C -0.077 4.077 5 O -0.050 6.050 6 C -0.136 4.136 7 C 0.388 3.612 8 O -0.406 6.406 9 N -0.325 5.325 10 C -0.067 4.067 11 C 0.014 3.986 12 C -0.108 4.108 13 H 0.097 0.903 14 C -0.176 4.176 15 C -0.116 4.116 16 N -0.156 5.156 17 C -0.118 4.118 18 C 0.231 3.769 19 O -0.462 6.462 20 N -0.202 5.202 21 C -0.427 4.427 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.543 5.543 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.207 1.207 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.171 0.829 33 H 0.225 0.775 34 H 0.070 0.930 35 H 0.113 0.887 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.112 0.888 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.101 0.899 45 H 0.224 0.776 46 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.808 -1.139 16.649 17.366 hybrid contribution -0.512 1.135 -1.271 1.780 sum -5.319 -0.004 15.377 16.271 Atomic orbital electron populations 1.20372 0.88377 1.03421 1.02595 1.20607 0.97541 0.91062 0.99910 1.21710 0.92465 1.00064 1.10262 1.24450 0.99960 0.81309 1.01945 1.84337 1.28041 1.22130 1.70489 1.21798 0.81626 0.94692 1.15437 1.16691 0.85392 0.82032 0.77121 1.90817 1.16108 1.82252 1.51435 1.47608 1.07689 1.06417 1.70794 1.22098 0.79457 1.03636 1.01512 1.21524 1.01160 0.80625 0.95253 1.23933 0.95066 0.96393 0.95438 0.90330 1.23206 1.01214 0.94650 0.98559 1.23570 1.00033 0.92880 0.95149 1.68732 1.34187 1.00984 1.11705 1.22426 0.97594 0.96033 0.95741 1.19657 0.88207 0.84607 0.84411 1.90516 1.39410 1.41388 1.74898 1.41885 1.26910 1.24127 1.27262 1.19735 1.06039 1.10408 1.06512 0.87904 1.25257 0.98174 0.95577 0.98935 1.69626 1.33237 1.14091 1.37351 0.85818 0.80367 0.78292 0.79975 1.19218 1.20769 1.20749 0.90963 0.91531 0.89835 0.82851 0.77517 0.92966 0.88701 0.90173 0.89583 0.89430 0.88845 0.90756 0.91878 0.89050 0.93135 0.89880 0.77602 0.91945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.75 36.01 0.35 -0.72 16 2 C -0.09 -1.17 6.20 -104.43 -0.65 -1.81 16 3 C -0.23 -2.51 10.83 -39.89 -0.43 -2.94 16 4 C -0.01 -0.07 12.08 29.63 0.36 0.29 16 5 O -0.15 -2.02 7.30 4.99 0.04 -1.99 16 6 C -0.08 -1.21 6.76 -36.80 -0.25 -1.46 16 7 C 0.60 8.99 7.64 -12.86 -0.10 8.89 16 8 O -0.53 -8.68 14.40 5.19 0.07 -8.61 16 9 N -0.59 -8.00 2.70 -183.13 -0.50 -8.50 16 10 C 0.08 0.97 9.06 59.85 0.54 1.52 16 11 C 0.14 1.64 5.56 -4.04 -0.02 1.61 16 12 C 0.00 0.03 3.37 -71.44 -0.24 -0.21 16 13 H 0.08 1.11 7.77 -51.93 -0.40 0.70 16 14 C -0.14 -1.56 8.00 -26.20 -0.21 -1.77 16 15 C 0.01 0.19 6.71 -7.55 -0.05 0.14 16 16 N -0.43 -7.09 4.74 -237.97 -1.13 -8.22 16 17 C 0.01 0.27 5.31 -4.98 -0.03 0.24 16 18 C 0.45 10.69 7.62 -10.99 -0.08 10.60 16 19 O -0.58 -15.60 15.34 5.54 0.09 -15.52 16 20 N -0.57 -14.60 5.29 -10.96 -0.06 -14.66 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.08 1.12 6.62 -51.93 -0.34 0.77 16 32 H 0.15 1.32 8.06 -52.49 -0.42 0.90 16 33 H 0.21 1.38 8.06 -52.49 -0.42 0.95 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 1.33 7.38 -51.92 -0.38 0.94 16 36 H 0.08 1.14 5.42 -51.93 -0.28 0.86 16 37 H 0.09 0.89 7.81 -51.93 -0.41 0.48 16 38 H 0.09 1.02 7.37 -51.93 -0.38 0.63 16 39 H 0.09 0.95 7.94 -51.93 -0.41 0.54 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.98 7.70 -51.93 -0.40 0.58 16 42 H 0.09 1.53 8.13 -51.93 -0.42 1.11 16 43 H 0.05 0.91 7.56 -51.93 -0.39 0.52 16 44 H 0.08 1.55 7.85 -51.93 -0.41 1.14 16 45 H 0.39 9.85 7.90 -40.82 -0.32 9.53 16 46 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 381.34 15.07 5.75 5.75 Total: -1.00 -33.07 381.34 -7.69 -40.77 By element: Atomic # 1 Polarization: 19.15 SS G_CDS: -6.60 Total: 12.55 kcal Atomic # 6 Polarization: 7.45 SS G_CDS: -1.05 Total: 6.40 kcal Atomic # 7 Polarization: -54.48 SS G_CDS: -0.96 Total: -55.43 kcal Atomic # 8 Polarization: -26.31 SS G_CDS: 0.20 Total: -26.11 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.07 -7.69 -40.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230762180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.786 kcal (2) G-P(sol) polarization free energy of solvation -33.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds