Wall clock time and date at job start Tue Mar 31 2020 19:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.40366 * 126.64587 * 2 1 4 4 C 1.35129 * 107.11400 * 179.97438 * 3 2 1 5 5 O 1.33933 * 108.76899 * 0.02562 * 4 3 2 6 6 C 1.34916 * 109.38334 * 0.02562 * 5 4 3 7 7 C 1.46661 * 125.98645 * 180.02562 * 6 5 4 8 8 O 1.21698 * 119.99798 * 172.53896 * 7 6 5 9 9 N 1.34769 * 120.00227 * 352.53951 * 7 6 5 10 10 C 1.46502 * 119.99775 * 3.54223 * 9 7 6 11 11 C 1.46494 * 120.00226 * 183.53763 * 9 7 6 12 12 C 1.53009 * 109.47090 * 90.00216 * 11 9 7 13 13 H 1.08998 * 112.74172 * 284.23103 * 12 11 9 14 14 C 1.53510 * 113.47535 * 153.38086 * 12 11 9 15 15 C 1.53512 * 83.57336 * 219.20909 * 14 12 11 16 16 N 1.47476 * 113.47613 * 54.99773 * 12 11 9 17 17 C 1.46892 * 111.00260 * 253.47364 * 16 12 11 18 18 C 1.50701 * 109.47526 * 190.00145 * 17 16 12 19 19 O 1.21296 * 119.99489 * 359.97438 * 18 17 16 20 20 N 1.34774 * 120.00489 * 180.02562 * 18 17 16 21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17 22 22 H 1.07997 * 120.00270 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99325 * 179.97438 * 21 20 18 24 24 N 1.31408 * 120.00670 * 359.97438 * 23 21 20 25 25 Si 1.86802 * 119.99339 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47372 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47093 * 119.99814 * 25 23 21 28 28 H 1.48504 * 109.46929 * 239.99458 * 25 23 21 29 29 H 1.08995 * 109.47593 * 270.02409 * 1 2 3 30 30 H 1.09008 * 109.47050 * 30.02379 * 1 2 3 31 31 H 1.09000 * 109.47110 * 150.02099 * 1 2 3 32 32 H 1.07998 * 126.44102 * 0.02789 * 3 2 1 33 33 H 1.07996 * 125.61739 * 180.27086 * 4 3 2 34 34 H 1.08999 * 109.47371 * 83.93446 * 10 9 7 35 35 H 1.09010 * 109.46849 * 203.93643 * 10 9 7 36 36 H 1.08999 * 109.46964 * 323.93005 * 10 9 7 37 37 H 1.09003 * 109.47744 * 209.99797 * 11 9 7 38 38 H 1.08995 * 109.47362 * 330.00551 * 11 9 7 39 39 H 1.08991 * 114.17494 * 332.85415 * 14 12 11 40 40 H 1.09003 * 114.17034 * 105.56478 * 14 12 11 41 41 H 1.09001 * 113.47389 * 271.25906 * 15 14 12 42 42 H 1.08996 * 113.53446 * 140.80242 * 15 14 12 43 43 H 1.08995 * 109.47033 * 310.00050 * 17 16 12 44 44 H 1.09006 * 109.47542 * 70.00242 * 17 16 12 45 45 H 0.96996 * 120.00136 * 359.97438 * 20 18 17 46 46 H 0.97001 * 120.00062 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 0.0006 5 8 3.6005 -0.6648 0.0004 6 6 2.3220 -1.0956 -0.0009 7 6 1.8842 -2.4953 -0.0010 8 8 0.7051 -2.7641 0.1346 9 7 2.7877 -3.4839 -0.1513 10 6 4.2151 -3.1650 -0.2367 11 6 2.3426 -4.8774 -0.2292 12 6 2.0760 -5.2468 -1.6899 13 1 1.1417 -4.8301 -2.0661 14 6 2.2404 -6.7449 -1.9816 15 6 2.8737 -6.2450 -3.2876 16 7 3.2280 -5.0020 -2.5775 17 6 2.9974 -3.8262 -3.4272 18 6 4.0717 -3.7496 -4.4813 19 8 4.9440 -4.5915 -4.5205 20 7 4.0639 -2.7451 -5.3798 21 6 5.0410 -2.6758 -6.3391 22 1 5.8171 -3.4259 -6.3745 23 6 5.0325 -1.6404 -7.2657 24 7 4.0878 -0.7280 -7.2230 25 14 6.3642 -1.5456 -8.5723 26 1 7.3034 -2.6837 -8.4053 27 1 5.7418 -1.6103 -9.9190 28 1 7.1062 -0.2671 -8.4308 29 1 -0.3634 0.0004 1.0276 30 1 -0.3633 0.8898 -0.5142 31 1 -0.3633 -0.8902 -0.5135 32 1 2.0306 2.1595 0.0004 33 1 4.5046 1.2916 0.0049 34 1 4.6252 -3.0624 0.7680 35 1 4.7356 -3.9661 -0.7616 36 1 4.3464 -2.2293 -0.7801 37 1 3.1171 -5.5295 0.1748 38 1 1.4269 -4.9993 0.3493 39 1 2.9356 -7.2557 -1.3155 40 1 1.2999 -7.2790 -2.1175 41 1 2.1521 -6.0957 -4.0908 42 1 3.7397 -6.8274 -3.6021 43 1 2.0226 -3.9105 -3.9074 44 1 3.0242 -2.9246 -2.8151 45 1 3.3666 -2.0716 -5.3483 46 1 4.0818 -0.0054 -7.8701 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001230762180.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:08:55 Heat of formation + Delta-G solvation = -28.079534 kcal Electronic energy + Delta-G solvation = -30116.220891 eV Core-core repulsion = 26008.549537 eV Total energy + Delta-G solvation = -4107.671354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.69936 -41.69134 -40.37811 -39.52103 -36.72409 -35.97074 -34.94966 -33.36809 -32.31249 -31.53571 -29.96641 -28.65176 -27.56112 -27.28280 -25.38853 -24.86177 -23.10802 -22.06585 -21.14797 -20.75404 -20.29045 -19.94763 -18.50159 -17.83884 -17.65540 -17.34621 -17.23039 -16.81757 -16.75360 -16.47491 -15.85398 -15.63107 -15.25481 -14.99917 -14.95402 -14.43408 -14.25057 -14.12496 -14.02846 -13.81167 -13.75664 -13.56893 -13.55528 -13.06498 -12.96188 -12.85467 -12.75407 -12.50076 -12.45067 -12.38333 -12.13815 -11.96051 -11.66928 -11.51712 -11.16938 -10.66153 -10.44031 -10.05813 -9.97053 -9.72666 -9.40160 -8.49182 -5.98734 0.05035 1.34375 1.39834 1.41381 1.54407 1.66738 1.98666 2.03310 2.17260 2.26492 2.81527 3.15983 3.28636 3.49130 3.59629 3.81036 3.82326 3.93549 4.12768 4.15537 4.20047 4.30679 4.32646 4.41984 4.42264 4.55519 4.57783 4.62506 4.63943 4.73321 4.76312 4.82673 4.85791 4.99587 5.02158 5.13443 5.21429 5.24273 5.33165 5.38016 5.40680 5.52638 5.87699 5.92184 6.04599 6.26671 6.55020 6.94682 7.08777 7.50101 8.05074 8.68680 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.004183 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.485613 B = 6691.554827 C = 8745.024171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.098 4.098 3 C -0.235 4.235 4 C 0.000 4.000 5 O -0.165 6.165 6 C -0.118 4.118 7 C 0.593 3.407 8 O -0.551 6.551 9 N -0.594 5.594 10 C 0.083 3.917 11 C 0.137 3.863 12 C 0.006 3.994 13 H 0.070 0.930 14 C -0.108 4.108 15 C 0.001 3.999 16 N -0.447 5.447 17 C 0.033 3.967 18 C 0.446 3.554 19 O -0.610 6.610 20 N -0.575 5.575 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.013 4.013 24 N -0.922 5.922 25 Si 0.994 3.006 26 H -0.272 1.272 27 H -0.271 1.271 28 H -0.269 1.269 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.062 0.938 32 H 0.179 0.821 33 H 0.246 0.754 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.112 0.888 40 H 0.101 0.899 41 H 0.056 0.944 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.613 0.028 17.206 18.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.101 4.101 3 C -0.254 4.254 4 C -0.070 4.070 5 O -0.061 6.061 6 C -0.170 4.170 7 C 0.383 3.617 8 O -0.432 6.432 9 N -0.324 5.324 10 C -0.059 4.059 11 C 0.014 3.986 12 C -0.104 4.104 13 H 0.088 0.912 14 C -0.146 4.146 15 C -0.128 4.128 16 N -0.170 5.170 17 C -0.099 4.099 18 C 0.233 3.767 19 O -0.496 6.496 20 N -0.212 5.212 21 C -0.460 4.460 22 H 0.099 0.901 23 C -0.212 4.212 24 N -0.563 5.563 25 Si 0.818 3.182 26 H -0.196 1.196 27 H -0.196 1.196 28 H -0.195 1.195 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.081 0.919 32 H 0.197 0.803 33 H 0.262 0.738 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.113 0.887 39 H 0.130 0.870 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.102 0.898 45 H 0.225 0.775 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.724 -0.624 17.392 18.033 hybrid contribution -0.533 1.016 -1.475 1.869 sum -5.256 0.391 15.917 16.767 Atomic orbital electron populations 1.20372 0.87800 1.03231 1.03117 1.21009 0.98325 0.91694 0.99099 1.22059 0.92287 1.00752 1.10269 1.25311 1.01394 0.80600 0.99658 1.84320 1.27557 1.23434 1.70766 1.21815 0.82417 0.94795 1.17929 1.16868 0.85292 0.82651 0.76904 1.90787 1.16886 1.82756 1.52785 1.47687 1.07648 1.06831 1.70209 1.22011 0.79207 1.02395 1.02293 1.21658 1.02246 0.80206 0.94448 1.23954 0.93323 0.97797 0.95355 0.91212 1.23154 1.02311 0.93556 0.95609 1.23628 0.99501 0.92662 0.97040 1.68759 1.36153 1.00179 1.11867 1.22187 0.95661 0.97539 0.94477 1.20499 0.88571 0.83235 0.84427 1.90484 1.41017 1.42324 1.75765 1.41965 1.26767 1.24787 1.27637 1.19698 1.06832 1.11063 1.08433 0.90148 1.26069 1.00172 0.94646 1.00344 1.69693 1.34259 1.14323 1.38039 0.84857 0.77593 0.78391 0.77405 1.19637 1.19637 1.19451 0.90051 0.89746 0.91887 0.80325 0.73773 0.90992 0.89794 0.91620 0.87504 0.88747 0.86993 0.88107 0.92531 0.91107 0.92373 0.89801 0.77489 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.05 9.75 71.24 0.69 -1.36 16 2 C -0.10 -2.55 6.20 -19.74 -0.12 -2.67 16 3 C -0.23 -4.82 10.83 22.07 0.24 -4.58 16 4 C 0.00 -0.01 12.08 67.10 0.81 0.80 16 5 O -0.16 -4.22 7.30 -5.08 -0.04 -4.26 16 6 C -0.12 -3.40 6.76 24.07 0.16 -3.23 16 7 C 0.59 17.86 7.64 86.44 0.66 18.52 16 8 O -0.55 -18.32 14.40 -4.34 -0.06 -18.39 16 9 N -0.59 -15.68 2.70 -851.52 -2.30 -17.99 16 10 C 0.08 2.12 9.06 127.77 1.16 3.28 16 11 C 0.14 3.06 5.56 86.38 0.48 3.54 16 12 C 0.01 0.15 3.37 42.18 0.14 0.30 16 13 H 0.07 1.91 7.77 -2.39 -0.02 1.89 16 14 C -0.11 -2.19 8.00 30.94 0.25 -1.95 16 15 C 0.00 0.02 6.71 83.57 0.56 0.58 16 16 N -0.45 -14.53 4.74 -906.81 -4.30 -18.83 16 17 C 0.03 1.28 5.31 85.56 0.45 1.73 16 18 C 0.45 21.99 7.62 87.66 0.67 22.66 16 19 O -0.61 -33.98 15.34 -3.08 -0.05 -34.03 16 20 N -0.57 -30.56 5.29 -306.98 -1.62 -32.18 16 21 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16 23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 24 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16 25 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.06 1.72 6.62 -2.39 -0.02 1.70 16 32 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 33 H 0.25 2.51 8.06 -2.91 -0.02 2.49 16 34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.08 2.32 7.38 -2.38 -0.02 2.30 16 36 H 0.07 1.89 5.42 -2.39 -0.01 1.87 16 37 H 0.11 1.95 7.81 -2.39 -0.02 1.93 16 38 H 0.09 2.03 7.37 -2.39 -0.02 2.02 16 39 H 0.11 1.91 7.94 -2.39 -0.02 1.89 16 40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.06 1.76 7.70 -2.39 -0.02 1.74 16 42 H 0.07 2.42 8.13 -2.39 -0.02 2.40 16 43 H 0.06 2.13 7.56 -2.39 -0.02 2.11 16 44 H 0.08 3.20 7.85 -2.38 -0.02 3.18 16 45 H 0.39 20.32 7.90 -92.71 -0.73 19.58 16 46 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16 Total: -1.00 -73.14 381.34 1.66 -71.48 By element: Atomic # 1 Polarization: 39.88 SS G_CDS: 0.28 Total: 40.16 kcal Atomic # 6 Polarization: 11.74 SS G_CDS: 7.44 Total: 19.18 kcal Atomic # 7 Polarization: -111.34 SS G_CDS: -7.94 Total: -119.27 kcal Atomic # 8 Polarization: -56.53 SS G_CDS: -0.15 Total: -56.67 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -73.14 1.66 -71.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001230762180.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.404 kcal (2) G-P(sol) polarization free energy of solvation -73.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds