Wall clock time and date at job start Tue Mar 31 2020 19:08:55
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50701 * 1
3 3 C 1.40366 * 126.64587 * 2 1
4 4 C 1.35129 * 107.11400 * 179.97438 * 3 2 1
5 5 O 1.33933 * 108.76899 * 0.02562 * 4 3 2
6 6 C 1.34916 * 109.38334 * 0.02562 * 5 4 3
7 7 C 1.46661 * 125.98645 * 180.02562 * 6 5 4
8 8 O 1.21698 * 119.99798 * 172.53896 * 7 6 5
9 9 N 1.34769 * 120.00227 * 352.53951 * 7 6 5
10 10 C 1.46502 * 119.99775 * 3.54223 * 9 7 6
11 11 C 1.46494 * 120.00226 * 183.53763 * 9 7 6
12 12 C 1.53009 * 109.47090 * 90.00216 * 11 9 7
13 13 H 1.08998 * 112.74172 * 284.23103 * 12 11 9
14 14 C 1.53510 * 113.47535 * 153.38086 * 12 11 9
15 15 C 1.53512 * 83.57336 * 219.20909 * 14 12 11
16 16 N 1.47476 * 113.47613 * 54.99773 * 12 11 9
17 17 C 1.46892 * 111.00260 * 253.47364 * 16 12 11
18 18 C 1.50701 * 109.47526 * 190.00145 * 17 16 12
19 19 O 1.21296 * 119.99489 * 359.97438 * 18 17 16
20 20 N 1.34774 * 120.00489 * 180.02562 * 18 17 16
21 21 C 1.37100 * 119.99934 * 180.02562 * 20 18 17
22 22 H 1.07997 * 120.00270 * 359.97438 * 21 20 18
23 23 C 1.38950 * 119.99325 * 179.97438 * 21 20 18
24 24 N 1.31408 * 120.00670 * 359.97438 * 23 21 20
25 25 Si 1.86802 * 119.99339 * 179.97438 * 23 21 20
26 26 H 1.48499 * 109.47372 * 359.97438 * 25 23 21
27 27 H 1.48504 * 109.47093 * 119.99814 * 25 23 21
28 28 H 1.48504 * 109.46929 * 239.99458 * 25 23 21
29 29 H 1.08995 * 109.47593 * 270.02409 * 1 2 3
30 30 H 1.09008 * 109.47050 * 30.02379 * 1 2 3
31 31 H 1.09000 * 109.47110 * 150.02099 * 1 2 3
32 32 H 1.07998 * 126.44102 * 0.02789 * 3 2 1
33 33 H 1.07996 * 125.61739 * 180.27086 * 4 3 2
34 34 H 1.08999 * 109.47371 * 83.93446 * 10 9 7
35 35 H 1.09010 * 109.46849 * 203.93643 * 10 9 7
36 36 H 1.08999 * 109.46964 * 323.93005 * 10 9 7
37 37 H 1.09003 * 109.47744 * 209.99797 * 11 9 7
38 38 H 1.08995 * 109.47362 * 330.00551 * 11 9 7
39 39 H 1.08991 * 114.17494 * 332.85415 * 14 12 11
40 40 H 1.09003 * 114.17034 * 105.56478 * 14 12 11
41 41 H 1.09001 * 113.47389 * 271.25906 * 15 14 12
42 42 H 1.08996 * 113.53446 * 140.80242 * 15 14 12
43 43 H 1.08995 * 109.47033 * 310.00050 * 17 16 12
44 44 H 1.09006 * 109.47542 * 70.00242 * 17 16 12
45 45 H 0.96996 * 120.00136 * 359.97438 * 20 18 17
46 46 H 0.97001 * 120.00062 * 180.02562 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.3448 1.1262 0.0000
4 6 3.6183 0.6744 0.0006
5 8 3.6005 -0.6648 0.0004
6 6 2.3220 -1.0956 -0.0009
7 6 1.8842 -2.4953 -0.0010
8 8 0.7051 -2.7641 0.1346
9 7 2.7877 -3.4839 -0.1513
10 6 4.2151 -3.1650 -0.2367
11 6 2.3426 -4.8774 -0.2292
12 6 2.0760 -5.2468 -1.6899
13 1 1.1417 -4.8301 -2.0661
14 6 2.2404 -6.7449 -1.9816
15 6 2.8737 -6.2450 -3.2876
16 7 3.2280 -5.0020 -2.5775
17 6 2.9974 -3.8262 -3.4272
18 6 4.0717 -3.7496 -4.4813
19 8 4.9440 -4.5915 -4.5205
20 7 4.0639 -2.7451 -5.3798
21 6 5.0410 -2.6758 -6.3391
22 1 5.8171 -3.4259 -6.3745
23 6 5.0325 -1.6404 -7.2657
24 7 4.0878 -0.7280 -7.2230
25 14 6.3642 -1.5456 -8.5723
26 1 7.3034 -2.6837 -8.4053
27 1 5.7418 -1.6103 -9.9190
28 1 7.1062 -0.2671 -8.4308
29 1 -0.3634 0.0004 1.0276
30 1 -0.3633 0.8898 -0.5142
31 1 -0.3633 -0.8902 -0.5135
32 1 2.0306 2.1595 0.0004
33 1 4.5046 1.2916 0.0049
34 1 4.6252 -3.0624 0.7680
35 1 4.7356 -3.9661 -0.7616
36 1 4.3464 -2.2293 -0.7801
37 1 3.1171 -5.5295 0.1748
38 1 1.4269 -4.9993 0.3493
39 1 2.9356 -7.2557 -1.3155
40 1 1.2999 -7.2790 -2.1175
41 1 2.1521 -6.0957 -4.0908
42 1 3.7397 -6.8274 -3.6021
43 1 2.0226 -3.9105 -3.9074
44 1 3.0242 -2.9246 -2.8151
45 1 3.3666 -2.0716 -5.3483
46 1 4.0818 -0.0054 -7.8701
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001230762180.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 19:08:55
Heat of formation + Delta-G solvation = -28.079534 kcal
Electronic energy + Delta-G solvation = -30116.220891 eV
Core-core repulsion = 26008.549537 eV
Total energy + Delta-G solvation = -4107.671354 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 335.168 amu
Computer time = 0.83 seconds
Orbital eigenvalues (eV)
-43.69936 -41.69134 -40.37811 -39.52103 -36.72409 -35.97074 -34.94966 -33.36809
-32.31249 -31.53571 -29.96641 -28.65176 -27.56112 -27.28280 -25.38853 -24.86177
-23.10802 -22.06585 -21.14797 -20.75404 -20.29045 -19.94763 -18.50159 -17.83884
-17.65540 -17.34621 -17.23039 -16.81757 -16.75360 -16.47491 -15.85398 -15.63107
-15.25481 -14.99917 -14.95402 -14.43408 -14.25057 -14.12496 -14.02846 -13.81167
-13.75664 -13.56893 -13.55528 -13.06498 -12.96188 -12.85467 -12.75407 -12.50076
-12.45067 -12.38333 -12.13815 -11.96051 -11.66928 -11.51712 -11.16938 -10.66153
-10.44031 -10.05813 -9.97053 -9.72666 -9.40160 -8.49182 -5.98734 0.05035
1.34375 1.39834 1.41381 1.54407 1.66738 1.98666 2.03310 2.17260
2.26492 2.81527 3.15983 3.28636 3.49130 3.59629 3.81036 3.82326
3.93549 4.12768 4.15537 4.20047 4.30679 4.32646 4.41984 4.42264
4.55519 4.57783 4.62506 4.63943 4.73321 4.76312 4.82673 4.85791
4.99587 5.02158 5.13443 5.21429 5.24273 5.33165 5.38016 5.40680
5.52638 5.87699 5.92184 6.04599 6.26671 6.55020 6.94682 7.08777
7.50101 8.05074 8.68680
Molecular weight = 335.17amu
Principal moments of inertia in cm(-1)
A = 0.009424 B = 0.004183 C = 0.003201
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2970.485613 B = 6691.554827 C = 8745.024171
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.089 4.089
2 C -0.098 4.098
3 C -0.235 4.235
4 C 0.000 4.000
5 O -0.165 6.165
6 C -0.118 4.118
7 C 0.593 3.407
8 O -0.551 6.551
9 N -0.594 5.594
10 C 0.083 3.917
11 C 0.137 3.863
12 C 0.006 3.994
13 H 0.070 0.930
14 C -0.108 4.108
15 C 0.001 3.999
16 N -0.447 5.447
17 C 0.033 3.967
18 C 0.446 3.554
19 O -0.610 6.610
20 N -0.575 5.575
21 C -0.331 4.331
22 H 0.081 0.919
23 C -0.013 4.013
24 N -0.922 5.922
25 Si 0.994 3.006
26 H -0.272 1.272
27 H -0.271 1.271
28 H -0.269 1.269
29 H 0.081 0.919
30 H 0.084 0.916
31 H 0.062 0.938
32 H 0.179 0.821
33 H 0.246 0.754
34 H 0.072 0.928
35 H 0.083 0.917
36 H 0.065 0.935
37 H 0.107 0.893
38 H 0.094 0.906
39 H 0.112 0.888
40 H 0.101 0.899
41 H 0.056 0.944
42 H 0.070 0.930
43 H 0.058 0.942
44 H 0.084 0.916
45 H 0.392 0.608
46 H 0.278 0.722
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.613 0.028 17.206 18.098
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.101 4.101
3 C -0.254 4.254
4 C -0.070 4.070
5 O -0.061 6.061
6 C -0.170 4.170
7 C 0.383 3.617
8 O -0.432 6.432
9 N -0.324 5.324
10 C -0.059 4.059
11 C 0.014 3.986
12 C -0.104 4.104
13 H 0.088 0.912
14 C -0.146 4.146
15 C -0.128 4.128
16 N -0.170 5.170
17 C -0.099 4.099
18 C 0.233 3.767
19 O -0.496 6.496
20 N -0.212 5.212
21 C -0.460 4.460
22 H 0.099 0.901
23 C -0.212 4.212
24 N -0.563 5.563
25 Si 0.818 3.182
26 H -0.196 1.196
27 H -0.196 1.196
28 H -0.195 1.195
29 H 0.099 0.901
30 H 0.103 0.897
31 H 0.081 0.919
32 H 0.197 0.803
33 H 0.262 0.738
34 H 0.090 0.910
35 H 0.102 0.898
36 H 0.084 0.916
37 H 0.125 0.875
38 H 0.113 0.887
39 H 0.130 0.870
40 H 0.119 0.881
41 H 0.075 0.925
42 H 0.089 0.911
43 H 0.076 0.924
44 H 0.102 0.898
45 H 0.225 0.775
46 H 0.087 0.913
Dipole moment (debyes) X Y Z Total
from point charges -4.724 -0.624 17.392 18.033
hybrid contribution -0.533 1.016 -1.475 1.869
sum -5.256 0.391 15.917 16.767
Atomic orbital electron populations
1.20372 0.87800 1.03231 1.03117 1.21009 0.98325 0.91694 0.99099
1.22059 0.92287 1.00752 1.10269 1.25311 1.01394 0.80600 0.99658
1.84320 1.27557 1.23434 1.70766 1.21815 0.82417 0.94795 1.17929
1.16868 0.85292 0.82651 0.76904 1.90787 1.16886 1.82756 1.52785
1.47687 1.07648 1.06831 1.70209 1.22011 0.79207 1.02395 1.02293
1.21658 1.02246 0.80206 0.94448 1.23954 0.93323 0.97797 0.95355
0.91212 1.23154 1.02311 0.93556 0.95609 1.23628 0.99501 0.92662
0.97040 1.68759 1.36153 1.00179 1.11867 1.22187 0.95661 0.97539
0.94477 1.20499 0.88571 0.83235 0.84427 1.90484 1.41017 1.42324
1.75765 1.41965 1.26767 1.24787 1.27637 1.19698 1.06832 1.11063
1.08433 0.90148 1.26069 1.00172 0.94646 1.00344 1.69693 1.34259
1.14323 1.38039 0.84857 0.77593 0.78391 0.77405 1.19637 1.19637
1.19451 0.90051 0.89746 0.91887 0.80325 0.73773 0.90992 0.89794
0.91620 0.87504 0.88747 0.86993 0.88107 0.92531 0.91107 0.92373
0.89801 0.77489 0.91286
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.09 -2.05 9.75 71.24 0.69 -1.36 16
2 C -0.10 -2.55 6.20 -19.74 -0.12 -2.67 16
3 C -0.23 -4.82 10.83 22.07 0.24 -4.58 16
4 C 0.00 -0.01 12.08 67.10 0.81 0.80 16
5 O -0.16 -4.22 7.30 -5.08 -0.04 -4.26 16
6 C -0.12 -3.40 6.76 24.07 0.16 -3.23 16
7 C 0.59 17.86 7.64 86.44 0.66 18.52 16
8 O -0.55 -18.32 14.40 -4.34 -0.06 -18.39 16
9 N -0.59 -15.68 2.70 -851.52 -2.30 -17.99 16
10 C 0.08 2.12 9.06 127.77 1.16 3.28 16
11 C 0.14 3.06 5.56 86.38 0.48 3.54 16
12 C 0.01 0.15 3.37 42.18 0.14 0.30 16
13 H 0.07 1.91 7.77 -2.39 -0.02 1.89 16
14 C -0.11 -2.19 8.00 30.94 0.25 -1.95 16
15 C 0.00 0.02 6.71 83.57 0.56 0.58 16
16 N -0.45 -14.53 4.74 -906.81 -4.30 -18.83 16
17 C 0.03 1.28 5.31 85.56 0.45 1.73 16
18 C 0.45 21.99 7.62 87.66 0.67 22.66 16
19 O -0.61 -33.98 15.34 -3.08 -0.05 -34.03 16
20 N -0.57 -30.56 5.29 -306.98 -1.62 -32.18 16
21 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16
22 H 0.08 4.91 7.16 -2.91 -0.02 4.89 16
23 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16
24 N -0.92 -50.56 13.05 21.66 0.28 -50.28 16
25 Si 0.99 43.10 29.55 68.60 2.03 45.13 16
26 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16
27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16
28 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16
29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16
30 H 0.08 1.59 8.14 -2.38 -0.02 1.57 16
31 H 0.06 1.72 6.62 -2.39 -0.02 1.70 16
32 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16
33 H 0.25 2.51 8.06 -2.91 -0.02 2.49 16
34 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16
35 H 0.08 2.32 7.38 -2.38 -0.02 2.30 16
36 H 0.07 1.89 5.42 -2.39 -0.01 1.87 16
37 H 0.11 1.95 7.81 -2.39 -0.02 1.93 16
38 H 0.09 2.03 7.37 -2.39 -0.02 2.02 16
39 H 0.11 1.91 7.94 -2.39 -0.02 1.89 16
40 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16
41 H 0.06 1.76 7.70 -2.39 -0.02 1.74 16
42 H 0.07 2.42 8.13 -2.39 -0.02 2.40 16
43 H 0.06 2.13 7.56 -2.39 -0.02 2.11 16
44 H 0.08 3.20 7.85 -2.38 -0.02 3.18 16
45 H 0.39 20.32 7.90 -92.71 -0.73 19.58 16
46 H 0.28 14.17 8.31 -92.71 -0.77 13.40 16
Total: -1.00 -73.14 381.34 1.66 -71.48
By element:
Atomic # 1 Polarization: 39.88 SS G_CDS: 0.28 Total: 40.16 kcal
Atomic # 6 Polarization: 11.74 SS G_CDS: 7.44 Total: 19.18 kcal
Atomic # 7 Polarization: -111.34 SS G_CDS: -7.94 Total: -119.27 kcal
Atomic # 8 Polarization: -56.53 SS G_CDS: -0.15 Total: -56.67 kcal
Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal
Total: -73.14 1.66 -71.48 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001230762180.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 43.404 kcal
(2) G-P(sol) polarization free energy of solvation -73.140 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.736 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.656 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.483 kcal
(6) G-S(sol) free energy of system = (1) + (5) -28.080 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.83 seconds