Wall clock time and date at job start Tue Mar 31 2020 19:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35086 * 119.65094 * 2 1 4 4 C 1.41486 * 119.24812 * 180.02562 * 3 2 1 5 5 O 1.22239 * 120.68560 * 179.97438 * 4 3 2 6 6 C 1.41489 * 118.63591 * 0.02562 * 4 3 2 7 7 C 1.35094 * 119.24411 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.64712 * 180.02562 * 7 6 4 9 9 N 1.35602 * 120.70006 * 359.97438 * 7 6 4 10 10 C 1.46498 * 119.26238 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47033 * 88.91863 * 10 9 7 12 12 C 1.53004 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47020 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00096 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99836 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99928 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47069 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99764 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99946 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99811 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00226 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00207 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47198 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47095 * 120.00255 * 24 22 20 27 27 H 1.48499 * 109.47289 * 240.00270 * 24 22 20 28 28 H 1.09000 * 109.47253 * 95.45085 * 1 2 3 29 29 H 1.08997 * 109.47428 * 215.44791 * 1 2 3 30 30 H 1.08995 * 109.47217 * 335.44949 * 1 2 3 31 31 H 1.08000 * 120.38100 * 359.74527 * 3 2 1 32 32 H 1.08005 * 120.37734 * 179.97438 * 6 4 3 33 33 H 1.09007 * 109.47095 * 264.60651 * 8 7 6 34 34 H 1.08997 * 109.47839 * 24.60721 * 8 7 6 35 35 H 1.08999 * 109.47393 * 144.60955 * 8 7 6 36 36 H 1.08999 * 109.47199 * 208.91405 * 10 9 7 37 37 H 1.09000 * 109.47121 * 328.91719 * 10 9 7 38 38 H 1.09004 * 109.47429 * 299.99676 * 11 10 9 39 39 H 1.09000 * 109.47285 * 59.99956 * 11 10 9 40 40 H 1.08999 * 109.47174 * 299.99568 * 12 11 10 41 41 H 1.09000 * 109.47080 * 59.99840 * 12 11 10 42 42 H 0.97001 * 120.00031 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.46598 * 299.99516 * 16 15 13 44 44 H 1.09003 * 109.47044 * 59.99300 * 16 15 13 45 45 H 0.96999 * 120.00090 * 359.97438 * 19 17 16 46 46 H 0.97005 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1752 1.1740 0.0000 4 6 3.5900 1.1640 -0.0006 5 8 4.2212 2.2108 -0.0010 6 6 4.2594 -0.0825 -0.0016 7 6 3.5331 -1.2216 -0.0016 8 6 4.2366 -2.5543 -0.0022 9 7 2.1777 -1.1785 0.0000 10 6 1.4213 -2.4331 0.0006 11 6 1.1830 -2.8843 1.4430 12 6 0.3925 -4.1943 1.4436 13 6 0.1573 -4.6383 2.8644 14 8 0.5806 -3.9728 3.7857 15 7 -0.5227 -5.7755 3.1111 16 6 -0.7510 -6.2075 4.4923 17 6 -1.5297 -7.4977 4.4929 18 8 -1.8618 -8.0061 3.4429 19 7 -1.8571 -8.0866 5.6601 20 6 -2.5660 -9.2601 5.6607 21 1 -2.8617 -9.7128 4.7257 22 6 -2.9031 -9.8676 6.8640 23 7 -2.5428 -9.3170 8.0016 24 14 -3.8683 -11.4668 6.8648 25 1 -4.1491 -11.8762 5.4652 26 1 -3.0735 -12.5244 7.5395 27 1 -5.1492 -11.2716 7.5903 28 1 -0.3634 -0.0976 -1.0230 29 1 -0.3634 -0.8371 0.5960 30 1 -0.3633 0.9347 0.4270 31 1 1.6358 2.1096 -0.0041 32 1 5.3387 -0.1229 -0.0025 33 1 4.3204 -2.9205 -1.0255 34 1 5.2327 -2.4396 0.4253 35 1 3.6656 -3.2669 0.5931 36 1 0.4628 -2.2797 -0.4951 37 1 1.9869 -3.1985 -0.5308 38 1 2.1416 -3.0377 1.9388 39 1 0.6175 -2.1188 1.9744 40 1 -0.5660 -4.0404 0.9480 41 1 0.9576 -4.9599 0.9121 42 1 -0.8610 -6.3080 2.3742 43 1 0.2076 -6.3610 4.9880 44 1 -1.3163 -5.4419 5.0237 45 1 -1.5912 -7.6803 6.4998 46 1 -2.7784 -9.7409 8.8417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261206405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:39 Heat of formation + Delta-G solvation = -91.284994 kcal Electronic energy + Delta-G solvation = -27540.597573 eV Core-core repulsion = 23430.185424 eV Total energy + Delta-G solvation = -4110.412148 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.72770 -39.81588 -38.36812 -38.13040 -34.96795 -34.69733 -34.53802 -33.79662 -31.88266 -31.46241 -29.79211 -28.49002 -27.33968 -26.66404 -24.58656 -22.83841 -22.72227 -21.22651 -20.30747 -19.66948 -18.26403 -17.97209 -17.90097 -17.03649 -16.17768 -16.06125 -15.82816 -15.70570 -15.39357 -15.03028 -14.75678 -14.50760 -14.06597 -14.04375 -13.91860 -13.82239 -13.68092 -13.55218 -13.45555 -13.09534 -12.99159 -12.74774 -12.58063 -12.32830 -12.30208 -11.95839 -11.94453 -11.71297 -11.65722 -11.32403 -11.21358 -10.48247 -10.40792 -9.93682 -9.73627 -9.58462 -9.46333 -8.96812 -8.74501 -8.19546 -8.16597 -6.60185 -4.02599 1.02358 1.04171 2.06952 2.61770 3.03538 3.13618 3.18013 3.24418 3.59713 3.63566 3.77005 4.03179 4.03645 4.19753 4.30053 4.43710 4.51856 4.65544 4.75378 4.75875 4.76478 4.87442 4.89034 4.93608 4.95847 5.07242 5.08615 5.18738 5.25517 5.32025 5.39395 5.49394 5.62393 5.77819 5.78487 5.81977 5.83304 5.95880 6.30403 6.42893 6.50946 6.66279 7.37774 7.62065 7.82686 8.04312 8.25495 8.35425 8.95612 9.29541 9.76724 10.56553 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.001624 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.646156 B =17235.726986 C =17298.789059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.171 3.829 3 C -0.293 4.293 4 C 0.391 3.609 5 O -0.540 6.540 6 C -0.293 4.293 7 C 0.171 3.829 8 C -0.130 4.130 9 N -0.470 5.470 10 C 0.080 3.920 11 C -0.125 4.125 12 C -0.138 4.138 13 C 0.509 3.491 14 O -0.549 6.549 15 N -0.706 5.706 16 C 0.108 3.892 17 C 0.426 3.574 18 O -0.599 6.599 19 N -0.547 5.547 20 C -0.307 4.307 21 H 0.106 0.894 22 C 0.026 3.974 23 N -0.893 5.893 24 Si 0.933 3.067 25 H -0.267 1.267 26 H -0.280 1.280 27 H -0.280 1.280 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.088 0.912 34 H 0.093 0.907 35 H 0.083 0.917 36 H 0.101 0.899 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.411 0.589 43 H 0.083 0.917 44 H 0.083 0.917 45 H 0.396 0.604 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.865 12.026 -16.628 21.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.063 3.937 3 C -0.318 4.318 4 C 0.285 3.715 5 O -0.428 6.428 6 C -0.318 4.318 7 C 0.063 3.937 8 C -0.187 4.187 9 N -0.158 5.158 10 C -0.041 4.041 11 C -0.164 4.164 12 C -0.178 4.178 13 C 0.294 3.706 14 O -0.427 6.427 15 N -0.360 5.360 16 C -0.020 4.020 17 C 0.211 3.789 18 O -0.486 6.486 19 N -0.182 5.182 20 C -0.436 4.436 21 H 0.124 0.876 22 C -0.177 4.177 23 N -0.533 5.533 24 Si 0.760 3.240 25 H -0.191 1.191 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.106 0.894 29 H 0.101 0.899 30 H 0.112 0.888 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.101 0.899 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.117 0.883 41 H 0.117 0.883 42 H 0.249 0.751 43 H 0.102 0.898 44 H 0.101 0.899 45 H 0.230 0.770 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 7.109 12.423 -16.441 21.799 hybrid contribution -0.549 -0.926 0.415 1.154 sum 6.560 11.498 -16.026 20.786 Atomic orbital electron populations 1.21176 0.88137 1.05349 1.04036 1.20376 0.94716 0.85010 0.93599 1.22285 0.97030 0.97041 1.15396 1.17225 0.88870 0.89242 0.76147 1.90781 1.70137 1.34924 1.46966 1.22291 1.01457 0.92614 1.15394 1.20376 0.81975 0.97748 0.93575 1.21187 1.01552 0.91954 1.04045 1.43033 1.04855 1.06626 1.61280 1.22323 0.98068 0.84603 0.99153 1.21801 1.02536 0.97253 0.94806 1.21540 1.02757 0.98342 0.95181 1.20453 0.78115 0.80714 0.91274 1.90721 1.50942 1.54646 1.46407 1.45737 1.56075 1.24729 1.09469 1.20963 1.00930 0.96459 0.83614 1.19723 0.86495 0.87426 0.85208 1.90494 1.60141 1.66709 1.31251 1.41814 1.47690 1.22052 1.06632 1.19784 1.30345 0.98811 0.94661 0.87575 1.25348 0.97835 0.99926 0.94598 1.69623 1.45753 1.40150 0.97761 0.85746 0.78909 0.80658 0.78705 1.19115 1.20561 1.20556 0.89373 0.89891 0.88841 0.83818 0.83815 0.89375 0.88844 0.89863 0.88102 0.88173 0.89922 0.89945 0.88324 0.88315 0.75058 0.89847 0.89851 0.77023 0.91548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 8.87 36.00 0.32 -0.22 16 2 C 0.17 1.27 6.65 -82.05 -0.55 0.73 16 3 C -0.29 -3.06 9.59 -39.47 -0.38 -3.44 16 4 C 0.39 5.31 6.77 -37.11 -0.25 5.06 16 5 O -0.54 -9.62 17.90 4.70 0.08 -9.53 16 6 C -0.29 -3.07 9.59 -39.46 -0.38 -3.45 16 7 C 0.17 1.28 6.64 -82.05 -0.54 0.73 16 8 C -0.13 -0.55 8.88 36.00 0.32 -0.23 16 9 N -0.47 -3.08 2.60 -108.25 -0.28 -3.36 16 10 C 0.08 0.30 4.28 -4.04 -0.02 0.28 16 11 C -0.13 -0.78 4.46 -26.73 -0.12 -0.90 16 12 C -0.14 -0.88 5.70 -27.88 -0.16 -1.04 16 13 C 0.51 6.23 7.83 -10.98 -0.09 6.14 16 14 O -0.55 -8.76 15.98 5.56 0.09 -8.68 16 15 N -0.71 -9.85 5.53 -61.47 -0.34 -10.19 16 16 C 0.11 1.81 6.15 -5.19 -0.03 1.78 16 17 C 0.43 9.15 7.85 -10.99 -0.09 9.06 16 18 O -0.60 -14.37 15.24 5.54 0.08 -14.29 16 19 N -0.55 -12.97 5.29 -10.96 -0.06 -13.03 16 20 C -0.31 -8.03 9.68 -14.93 -0.14 -8.17 16 21 H 0.11 2.90 7.16 -52.48 -0.38 2.52 16 22 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 23 N -0.89 -23.14 13.05 55.50 0.72 -22.42 16 24 Si 0.93 19.84 29.55 -169.99 -5.02 14.81 16 25 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 27 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 29 H 0.08 0.29 5.88 -51.93 -0.31 -0.02 16 30 H 0.09 0.36 8.01 -51.93 -0.42 -0.06 16 31 H 0.14 1.38 8.04 -52.49 -0.42 0.95 16 32 H 0.14 1.38 8.04 -52.48 -0.42 0.96 16 33 H 0.09 0.24 8.14 -51.92 -0.42 -0.19 16 34 H 0.09 0.36 8.01 -51.93 -0.42 -0.05 16 35 H 0.08 0.30 5.68 -51.93 -0.30 0.01 16 36 H 0.10 0.20 6.48 -51.93 -0.34 -0.14 16 37 H 0.10 0.20 6.61 -51.93 -0.34 -0.14 16 38 H 0.08 0.64 7.03 -51.93 -0.37 0.27 16 39 H 0.08 0.64 7.25 -51.93 -0.38 0.26 16 40 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.41 5.52 7.44 -40.82 -0.30 5.21 16 43 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 44 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.40 9.04 7.90 -40.82 -0.32 8.72 16 46 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 LS Contribution 385.61 15.07 5.81 5.81 Total: -1.00 -36.33 385.61 -7.48 -43.81 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.37 Total: 10.17 kcal Atomic # 6 Polarization: 9.08 SS G_CDS: -2.20 Total: 6.88 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.04 Total: -49.00 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: 0.26 Total: -32.49 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -36.33 -7.48 -43.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261206405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.471 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds