Wall clock time and date at job start Tue Mar 31 2020 19:11:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.35086 * 119.65094 * 2 1 4 4 C 1.41486 * 119.24812 * 180.02562 * 3 2 1 5 5 O 1.22239 * 120.68560 * 179.97438 * 4 3 2 6 6 C 1.41489 * 118.63591 * 0.02562 * 4 3 2 7 7 C 1.35094 * 119.24411 * 359.97438 * 6 4 3 8 8 C 1.50697 * 119.64712 * 180.02562 * 7 6 4 9 9 N 1.35602 * 120.70006 * 359.97438 * 7 6 4 10 10 C 1.46498 * 119.26238 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47033 * 88.91863 * 10 9 7 12 12 C 1.53004 * 109.47099 * 179.97438 * 11 10 9 13 13 C 1.50704 * 109.47020 * 180.02562 * 12 11 10 14 14 O 1.21277 * 120.00096 * 359.97438 * 13 12 11 15 15 N 1.34780 * 119.99836 * 180.02562 * 13 12 11 16 16 C 1.46502 * 119.99928 * 179.97438 * 15 13 12 17 17 C 1.50697 * 109.47069 * 179.97438 * 16 15 13 18 18 O 1.21296 * 119.99764 * 359.97438 * 17 16 15 19 19 N 1.34776 * 119.99946 * 179.97438 * 17 16 15 20 20 C 1.37095 * 119.99962 * 179.97438 * 19 17 16 21 21 H 1.08006 * 119.99811 * 0.02562 * 20 19 17 22 22 C 1.38952 * 120.00226 * 179.97438 * 20 19 17 23 23 N 1.31415 * 119.99501 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00207 * 180.02562 * 22 20 19 25 25 H 1.48506 * 109.47198 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.47095 * 120.00255 * 24 22 20 27 27 H 1.48499 * 109.47289 * 240.00270 * 24 22 20 28 28 H 1.09000 * 109.47253 * 95.45085 * 1 2 3 29 29 H 1.08997 * 109.47428 * 215.44791 * 1 2 3 30 30 H 1.08995 * 109.47217 * 335.44949 * 1 2 3 31 31 H 1.08000 * 120.38100 * 359.74527 * 3 2 1 32 32 H 1.08005 * 120.37734 * 179.97438 * 6 4 3 33 33 H 1.09007 * 109.47095 * 264.60651 * 8 7 6 34 34 H 1.08997 * 109.47839 * 24.60721 * 8 7 6 35 35 H 1.08999 * 109.47393 * 144.60955 * 8 7 6 36 36 H 1.08999 * 109.47199 * 208.91405 * 10 9 7 37 37 H 1.09000 * 109.47121 * 328.91719 * 10 9 7 38 38 H 1.09004 * 109.47429 * 299.99676 * 11 10 9 39 39 H 1.09000 * 109.47285 * 59.99956 * 11 10 9 40 40 H 1.08999 * 109.47174 * 299.99568 * 12 11 10 41 41 H 1.09000 * 109.47080 * 59.99840 * 12 11 10 42 42 H 0.97001 * 120.00031 * 359.97438 * 15 13 12 43 43 H 1.08999 * 109.46598 * 299.99516 * 16 15 13 44 44 H 1.09003 * 109.47044 * 59.99300 * 16 15 13 45 45 H 0.96999 * 120.00090 * 359.97438 * 19 17 16 46 46 H 0.97005 * 119.99625 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1752 1.1740 0.0000 4 6 3.5900 1.1640 -0.0006 5 8 4.2212 2.2108 -0.0010 6 6 4.2594 -0.0825 -0.0016 7 6 3.5331 -1.2216 -0.0016 8 6 4.2366 -2.5543 -0.0022 9 7 2.1777 -1.1785 0.0000 10 6 1.4213 -2.4331 0.0006 11 6 1.1830 -2.8843 1.4430 12 6 0.3925 -4.1943 1.4436 13 6 0.1573 -4.6383 2.8644 14 8 0.5806 -3.9728 3.7857 15 7 -0.5227 -5.7755 3.1111 16 6 -0.7510 -6.2075 4.4923 17 6 -1.5297 -7.4977 4.4929 18 8 -1.8618 -8.0061 3.4429 19 7 -1.8571 -8.0866 5.6601 20 6 -2.5660 -9.2601 5.6607 21 1 -2.8617 -9.7128 4.7257 22 6 -2.9031 -9.8676 6.8640 23 7 -2.5428 -9.3170 8.0016 24 14 -3.8683 -11.4668 6.8648 25 1 -4.1491 -11.8762 5.4652 26 1 -3.0735 -12.5244 7.5395 27 1 -5.1492 -11.2716 7.5903 28 1 -0.3634 -0.0976 -1.0230 29 1 -0.3634 -0.8371 0.5960 30 1 -0.3633 0.9347 0.4270 31 1 1.6358 2.1096 -0.0041 32 1 5.3387 -0.1229 -0.0025 33 1 4.3204 -2.9205 -1.0255 34 1 5.2327 -2.4396 0.4253 35 1 3.6656 -3.2669 0.5931 36 1 0.4628 -2.2797 -0.4951 37 1 1.9869 -3.1985 -0.5308 38 1 2.1416 -3.0377 1.9388 39 1 0.6175 -2.1188 1.9744 40 1 -0.5660 -4.0404 0.9480 41 1 0.9576 -4.9599 0.9121 42 1 -0.8610 -6.3080 2.3742 43 1 0.2076 -6.3610 4.9880 44 1 -1.3163 -5.4419 5.0237 45 1 -1.5912 -7.6803 6.4998 46 1 -2.7784 -9.7409 8.8417 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261206405.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:11:39 Heat of formation + Delta-G solvation = -118.128192 kcal Electronic energy + Delta-G solvation = -27541.761581 eV Core-core repulsion = 23430.185424 eV Total energy + Delta-G solvation = -4111.576157 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38685 -40.96417 -39.89826 -39.12134 -36.26059 -35.56806 -35.25508 -35.21174 -33.37550 -32.60142 -30.23588 -29.66916 -27.91629 -27.65963 -26.20986 -23.55177 -23.30783 -21.88570 -21.36178 -21.23218 -20.05566 -18.80823 -18.62307 -17.99428 -17.18630 -17.03856 -17.01371 -16.63053 -16.44887 -16.25675 -16.13541 -15.67877 -15.37024 -15.12504 -14.84915 -14.56242 -14.30144 -14.22499 -13.96736 -13.91251 -13.86000 -13.57317 -13.51201 -13.47249 -13.15990 -13.12416 -12.91260 -12.60373 -12.50290 -12.44098 -12.13684 -12.10752 -11.75494 -11.57493 -10.96701 -10.54670 -10.41800 -10.20508 -10.16149 -10.06704 -9.01567 -8.51386 -6.01473 0.29803 0.30574 1.35428 1.43731 1.49086 1.57403 1.68525 1.92087 2.11517 2.34265 2.74412 3.15033 3.16306 3.27995 3.62272 3.67636 3.74803 3.86638 4.02383 4.18080 4.18585 4.26626 4.32791 4.33160 4.43833 4.46197 4.53845 4.57805 4.64427 4.66520 4.76197 4.78227 4.82233 4.98562 5.03759 5.11373 5.16008 5.29528 5.37554 5.40606 5.53846 5.85102 5.92239 5.98020 6.46575 6.61404 7.03802 7.14258 7.26365 7.45621 7.94429 8.65620 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.031932 B = 0.001624 C = 0.001618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.646156 B =17235.726986 C =17298.789059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.195 3.805 3 C -0.330 4.330 4 C 0.364 3.636 5 O -0.615 6.615 6 C -0.330 4.330 7 C 0.195 3.805 8 C -0.130 4.130 9 N -0.461 5.461 10 C 0.077 3.923 11 C -0.122 4.122 12 C -0.126 4.126 13 C 0.506 3.494 14 O -0.590 6.590 15 N -0.709 5.709 16 C 0.120 3.880 17 C 0.433 3.567 18 O -0.622 6.622 19 N -0.562 5.562 20 C -0.336 4.336 21 H 0.088 0.912 22 C -0.012 4.012 23 N -0.917 5.917 24 Si 0.997 3.003 25 H -0.268 1.268 26 H -0.273 1.273 27 H -0.273 1.273 28 H 0.116 0.884 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.141 0.859 32 H 0.141 0.859 33 H 0.116 0.884 34 H 0.095 0.905 35 H 0.099 0.901 36 H 0.134 0.866 37 H 0.133 0.867 38 H 0.066 0.934 39 H 0.065 0.935 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.416 0.584 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.398 0.602 46 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.357 9.604 -18.306 21.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.085 3.915 3 C -0.354 4.354 4 C 0.264 3.736 5 O -0.511 6.511 6 C -0.354 4.354 7 C 0.085 3.915 8 C -0.187 4.187 9 N -0.147 5.147 10 C -0.043 4.043 11 C -0.160 4.160 12 C -0.165 4.165 13 C 0.295 3.705 14 O -0.471 6.471 15 N -0.363 5.363 16 C -0.008 4.008 17 C 0.220 3.780 18 O -0.510 6.510 19 N -0.198 5.198 20 C -0.465 4.465 21 H 0.106 0.894 22 C -0.212 4.212 23 N -0.557 5.557 24 Si 0.820 3.180 25 H -0.192 1.192 26 H -0.198 1.198 27 H -0.198 1.198 28 H 0.134 0.866 29 H 0.118 0.882 30 H 0.114 0.886 31 H 0.159 0.841 32 H 0.158 0.842 33 H 0.134 0.866 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.151 0.849 37 H 0.151 0.849 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.255 0.745 43 H 0.107 0.893 44 H 0.107 0.893 45 H 0.232 0.768 46 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 5.583 9.970 -18.137 21.436 hybrid contribution -0.143 -0.277 0.917 0.968 sum 5.439 9.694 -17.220 20.496 Atomic orbital electron populations 1.21350 0.84984 1.06290 1.06043 1.20817 0.96468 0.84289 0.89946 1.22195 0.95853 0.98649 1.18731 1.17881 0.90430 0.89546 0.75708 1.90720 1.71489 1.36979 1.51914 1.22200 1.01786 0.92720 1.18727 1.20809 0.82449 0.98300 0.89952 1.21357 1.01456 0.89846 1.06037 1.43476 1.04896 1.07670 1.58630 1.22666 0.99898 0.83630 0.98099 1.21718 1.01473 0.96880 0.95976 1.21603 1.04993 0.98863 0.91090 1.21532 0.76325 0.79223 0.93458 1.90716 1.52337 1.55572 1.48448 1.45802 1.56832 1.25643 1.08040 1.20717 1.00302 0.93789 0.86006 1.20476 0.85207 0.88165 0.84123 1.90469 1.60774 1.67791 1.31983 1.41889 1.48417 1.22022 1.07426 1.19782 1.32024 1.00286 0.94408 0.89390 1.26128 0.98368 1.02743 0.94000 1.69689 1.46470 1.41386 0.98199 0.84813 0.77741 0.76923 0.78529 1.19235 1.19816 1.19805 0.86610 0.88218 0.88617 0.84129 0.84151 0.86610 0.88639 0.88260 0.84854 0.84923 0.91560 0.91632 0.85057 0.85038 0.74511 0.89254 0.89266 0.76827 0.91144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.60 8.87 71.23 0.63 0.03 16 2 C 0.19 2.53 6.65 41.25 0.27 2.80 16 3 C -0.33 -7.31 9.59 22.34 0.21 -7.10 16 4 C 0.36 10.95 6.77 23.87 0.16 11.11 16 5 O -0.62 -24.89 17.90 -6.10 -0.11 -25.00 16 6 C -0.33 -7.34 9.59 22.35 0.21 -7.12 16 7 C 0.19 2.55 6.64 41.25 0.27 2.82 16 8 C -0.13 -0.63 8.88 71.23 0.63 0.00 16 9 N -0.46 -4.56 2.60 -496.39 -1.29 -5.85 16 10 C 0.08 0.14 4.28 86.38 0.37 0.51 16 11 C -0.12 -0.96 4.46 30.59 0.14 -0.82 16 12 C -0.13 -0.94 5.70 29.85 0.17 -0.76 16 13 C 0.51 10.76 7.83 87.66 0.69 11.45 16 14 O -0.59 -17.71 15.98 -3.02 -0.05 -17.76 16 15 N -0.71 -17.90 5.53 -466.78 -2.58 -20.48 16 16 C 0.12 3.86 6.15 85.63 0.53 4.38 16 17 C 0.43 18.34 7.85 87.66 0.69 19.03 16 18 O -0.62 -29.36 15.24 -3.08 -0.05 -29.41 16 19 N -0.56 -26.73 5.29 -306.98 -1.62 -28.36 16 20 C -0.34 -17.69 9.68 84.04 0.81 -16.88 16 21 H 0.09 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 23 N -0.92 -47.35 13.05 21.66 0.28 -47.06 16 24 Si 1.00 40.17 29.55 68.60 2.03 42.20 16 25 H -0.27 -10.73 7.11 99.48 0.71 -10.03 16 26 H -0.27 -10.63 7.11 99.48 0.71 -9.92 16 27 H -0.27 -10.62 7.11 99.48 0.71 -9.92 16 28 H 0.12 0.02 8.14 -2.39 -0.02 0.00 16 29 H 0.10 0.20 5.88 -2.39 -0.01 0.19 16 30 H 0.10 0.49 8.01 -2.39 -0.02 0.47 16 31 H 0.14 3.01 8.04 -2.91 -0.02 2.98 16 32 H 0.14 3.02 8.04 -2.91 -0.02 2.99 16 33 H 0.12 0.05 8.14 -2.38 -0.02 0.03 16 34 H 0.09 0.51 8.01 -2.39 -0.02 0.49 16 35 H 0.10 0.23 5.68 -2.39 -0.01 0.22 16 36 H 0.13 -0.46 6.48 -2.39 -0.02 -0.47 16 37 H 0.13 -0.45 6.61 -2.39 -0.02 -0.47 16 38 H 0.07 0.78 7.03 -2.38 -0.02 0.76 16 39 H 0.06 0.78 7.25 -2.39 -0.02 0.76 16 40 H 0.13 0.25 8.14 -2.39 -0.02 0.24 16 41 H 0.13 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.42 9.90 7.44 -92.71 -0.69 9.21 16 43 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 44 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.40 18.33 7.90 -92.71 -0.73 17.59 16 46 H 0.28 13.48 8.31 -92.70 -0.77 12.71 16 Total: -1.00 -86.44 385.61 2.48 -83.95 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: -0.39 Total: 28.47 kcal Atomic # 6 Polarization: 13.05 SS G_CDS: 6.26 Total: 19.31 kcal Atomic # 7 Polarization: -96.54 SS G_CDS: -5.21 Total: -101.75 kcal Atomic # 8 Polarization: -71.97 SS G_CDS: -0.20 Total: -72.17 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -86.44 2.48 -83.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261206405.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.176 kcal (2) G-P(sol) polarization free energy of solvation -86.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds