Wall clock time and date at job start Tue Mar 31 2020 19:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44173 * 2 1 4 4 C 1.36544 * 106.70624 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98486 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00229 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00251 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00374 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.90276 * 37.40785 * 8 7 5 10 10 C 1.55136 * 110.99021 * 273.53909 * 8 7 5 11 11 C 1.54316 * 103.02142 * 206.25421 * 10 8 7 12 12 N 1.47445 * 107.22955 * 22.28484 * 11 10 8 13 13 C 1.46902 * 110.99993 * 123.25758 * 12 11 10 14 14 C 1.50702 * 109.47027 * 69.87046 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31414 * 120.00152 * 0.27554 * 19 17 16 21 21 Si 1.86803 * 119.99914 * 180.27723 * 19 17 16 22 22 H 1.48504 * 109.47034 * 59.99919 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99991 * 21 19 17 25 25 C 1.47847 * 108.56981 * 0.98987 * 12 11 10 26 26 O 1.34913 * 108.02481 * 0.24330 * 4 3 2 27 27 C 1.33928 * 109.38435 * 359.60132 * 26 4 3 28 28 C 1.50703 * 125.61471 * 180.19548 * 27 26 4 29 29 H 1.08995 * 109.47343 * 90.02296 * 1 2 3 30 30 H 1.09009 * 109.47261 * 210.01991 * 1 2 3 31 31 H 1.09002 * 109.47384 * 330.01576 * 1 2 3 32 32 H 1.08006 * 126.64351 * 0.03072 * 3 2 1 33 33 H 0.97008 * 119.99177 * 359.97438 * 7 5 4 34 34 H 1.09003 * 110.70332 * 87.87161 * 10 8 7 35 35 H 1.08996 * 110.85677 * 324.70927 * 10 8 7 36 36 H 1.08996 * 109.89058 * 262.88273 * 11 10 8 37 37 H 1.08994 * 109.88860 * 141.68888 * 11 10 8 38 38 H 1.09004 * 109.47131 * 309.87290 * 13 12 11 39 39 H 1.08994 * 109.47471 * 189.87039 * 13 12 11 40 40 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 41 41 H 0.96991 * 119.99827 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.37141 * 94.73522 * 25 12 11 43 43 H 1.09002 * 110.37215 * 217.07516 * 25 12 11 44 44 H 1.09004 * 109.47136 * 270.23393 * 28 27 26 45 45 H 1.08993 * 109.47224 * 30.24152 * 28 27 26 46 46 H 1.09002 * 109.47074 * 150.24252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8378 1.4941 -0.0013 6 8 4.7470 2.7076 -0.0019 7 7 6.0521 0.9092 -0.0024 8 6 7.2626 1.7343 -0.0037 9 1 7.1290 2.6218 0.6148 10 6 7.6701 2.1209 -1.4498 11 6 9.1927 2.3435 -1.3343 12 7 9.6536 1.6018 -0.1463 13 6 10.7071 0.6414 -0.5013 14 6 11.9645 1.3873 -0.8665 15 8 11.9817 2.5997 -0.8339 16 7 13.0702 0.7073 -1.2295 17 6 14.2142 1.3859 -1.5613 18 1 14.2297 2.4654 -1.5315 19 6 15.3558 0.6846 -1.9299 20 7 15.3371 -0.6289 -1.9657 21 14 16.9170 1.6090 -2.3746 22 1 17.3563 2.4253 -1.2144 23 1 17.9831 0.6380 -2.7295 24 1 16.6524 2.4985 -3.5339 25 6 8.4930 0.9151 0.4597 26 8 3.5857 -0.6804 -0.0064 27 6 2.3097 -1.0871 -0.0007 28 6 1.8455 -2.5208 -0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5136 32 1 2.0265 2.1625 0.0005 33 1 6.1244 -0.0582 -0.0023 34 1 7.1689 3.0381 -1.7592 35 1 7.4507 1.3103 -2.1446 36 1 9.4040 3.4059 -1.2131 37 1 9.6917 1.9632 -2.2255 38 1 10.3806 0.0416 -1.3509 39 1 10.9056 -0.0109 0.3491 40 1 13.0565 -0.2623 -1.2553 41 1 16.1338 -1.1184 -2.2234 42 1 8.4257 -0.1099 0.0950 43 1 8.5698 0.9277 1.5469 44 1 1.7326 -2.8665 -1.0278 45 1 2.5807 -3.1406 0.5130 46 1 0.8873 -2.5923 0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266315016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:30 Heat of formation + Delta-G solvation = -52.747331 kcal Electronic energy + Delta-G solvation = -27824.037225 eV Core-core repulsion = 23715.296195 eV Total energy + Delta-G solvation = -4108.741030 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.12083 -40.10479 -38.84378 -37.48449 -35.05920 -34.46837 -33.79260 -32.47156 -31.35434 -30.84910 -29.20414 -28.68125 -27.09512 -26.07865 -24.19552 -22.92077 -21.57440 -21.16644 -20.97020 -19.95286 -19.06340 -18.21896 -17.83765 -16.93231 -16.64273 -16.06661 -15.94886 -15.55538 -15.01972 -14.82793 -14.50115 -14.24136 -14.07936 -13.91788 -13.67362 -13.53570 -13.42902 -13.33118 -13.25400 -13.09787 -13.07745 -12.66321 -12.31776 -12.01177 -11.90197 -11.69281 -11.50500 -11.44097 -11.22789 -10.99531 -10.61906 -10.54694 -10.42682 -10.19454 -10.09342 -9.47593 -9.38273 -8.76358 -8.45320 -7.95734 -7.91516 -6.39784 -3.80401 0.69334 1.88141 2.21836 2.81798 2.88738 3.21687 3.27013 3.31714 3.92635 4.02633 4.16632 4.27328 4.35686 4.42481 4.49158 4.68051 4.71372 4.89394 4.96771 5.02948 5.12804 5.15282 5.21313 5.26334 5.27114 5.29725 5.39237 5.41185 5.52965 5.57898 5.62955 5.73060 5.78614 5.89566 5.95383 6.04967 6.07197 6.18115 6.30460 6.45558 6.51410 7.13161 7.19397 7.22924 7.56938 7.79303 8.08058 8.64197 9.20358 9.56579 10.08853 10.78022 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.902201 B =15787.479513 C =16433.162034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.194 4.194 3 C -0.113 4.113 4 C -0.079 4.079 5 C 0.605 3.395 6 O -0.516 6.516 7 N -0.710 5.710 8 C 0.136 3.864 9 H 0.109 0.891 10 C -0.155 4.155 11 C 0.058 3.942 12 N -0.501 5.501 13 C 0.041 3.959 14 C 0.444 3.556 15 O -0.575 6.575 16 N -0.566 5.566 17 C -0.298 4.298 18 H 0.102 0.898 19 C 0.022 3.978 20 N -0.903 5.903 21 Si 0.931 3.069 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.274 1.274 25 C 0.038 3.962 26 O -0.162 6.162 27 C 0.017 3.983 28 C -0.078 4.078 29 H 0.069 0.931 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.160 0.840 33 H 0.405 0.595 34 H 0.080 0.920 35 H 0.067 0.933 36 H 0.087 0.913 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.391 0.609 41 H 0.271 0.729 42 H 0.050 0.950 43 H 0.088 0.912 44 H 0.086 0.914 45 H 0.080 0.920 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.183 -6.895 3.756 30.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.195 4.195 3 C -0.133 4.133 4 C -0.130 4.130 5 C 0.392 3.608 6 O -0.393 6.393 7 N -0.360 5.360 8 C 0.031 3.969 9 H 0.127 0.873 10 C -0.194 4.194 11 C -0.070 4.070 12 N -0.225 5.225 13 C -0.091 4.091 14 C 0.229 3.771 15 O -0.458 6.458 16 N -0.203 5.203 17 C -0.428 4.428 18 H 0.120 0.880 19 C -0.180 4.180 20 N -0.545 5.545 21 Si 0.758 3.242 22 H -0.199 1.199 23 H -0.210 1.210 24 H -0.200 1.200 25 C -0.090 4.090 26 O -0.058 6.058 27 C -0.035 4.035 28 C -0.134 4.134 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.178 0.822 33 H 0.240 0.760 34 H 0.099 0.901 35 H 0.086 0.914 36 H 0.105 0.895 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.107 0.893 40 H 0.224 0.776 41 H 0.081 0.919 42 H 0.068 0.932 43 H 0.107 0.893 44 H 0.105 0.895 45 H 0.099 0.901 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -28.546 -5.164 4.084 29.295 hybrid contribution 0.514 -1.260 -0.884 1.622 sum -28.031 -6.423 3.200 28.935 Atomic orbital electron populations 1.20201 0.88538 1.02825 1.02328 1.20223 0.97575 0.91747 1.09966 1.21835 0.90510 1.00537 1.00451 1.21977 0.96176 0.80254 1.14632 1.16510 0.81158 0.86381 0.76800 1.90904 1.85876 1.12163 1.50380 1.45838 1.05157 1.10646 1.74407 1.22207 0.82437 0.94653 0.97585 0.87347 1.23258 0.97414 1.02551 0.96209 1.22710 0.91331 1.00969 0.91944 1.63250 1.07253 1.24401 1.27628 1.22099 0.92635 0.93975 1.00370 1.19714 0.84681 0.88411 0.84307 1.90528 1.84239 1.13641 1.57418 1.41848 1.09872 1.09159 1.59443 1.19652 0.87742 0.93431 1.41957 0.87976 1.25250 0.99521 0.95605 0.97581 1.69602 1.30539 1.05778 1.48570 0.85921 0.80453 0.78719 0.79138 1.19895 1.21016 1.19951 1.23258 0.88812 0.95961 1.01008 1.83995 1.28901 1.21795 1.71108 1.22603 0.80583 0.97242 1.03095 1.20420 1.02045 0.86981 1.03995 0.91230 0.91454 0.91241 0.82228 0.76025 0.90109 0.91382 0.89455 0.92267 0.93235 0.89320 0.77556 0.91881 0.93165 0.89334 0.89518 0.90071 0.88949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.41 10.17 36.01 0.37 -0.04 16 2 C -0.19 -1.55 6.14 -104.93 -0.64 -2.19 16 3 C -0.11 -1.12 10.57 -39.39 -0.42 -1.54 16 4 C -0.08 -0.86 7.13 -36.80 -0.26 -1.12 16 5 C 0.61 7.48 7.78 -12.86 -0.10 7.38 16 6 O -0.52 -7.95 16.61 5.19 0.09 -7.86 16 7 N -0.71 -7.51 5.23 -53.05 -0.28 -7.79 16 8 C 0.14 1.65 3.31 -65.80 -0.22 1.43 16 9 H 0.11 1.46 7.73 -51.93 -0.40 1.06 16 10 C -0.15 -2.01 6.64 -24.91 -0.17 -2.17 16 11 C 0.06 0.94 5.65 -2.84 -0.02 0.93 16 12 N -0.50 -8.29 4.85 -232.69 -1.13 -9.42 16 13 C 0.04 0.72 5.03 -4.97 -0.03 0.70 16 14 C 0.44 10.50 7.43 -10.98 -0.08 10.42 16 15 O -0.57 -15.65 15.12 5.55 0.08 -15.57 16 16 N -0.57 -14.37 5.29 -10.96 -0.06 -14.43 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 19 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 20 N -0.90 -24.60 13.05 55.50 0.72 -23.88 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.04 0.47 6.31 -2.30 -0.01 0.46 16 26 O -0.16 -1.56 10.40 5.00 0.05 -1.50 16 27 C 0.02 0.13 7.31 -35.41 -0.26 -0.13 16 28 C -0.08 -0.30 10.21 36.01 0.37 0.07 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.23 7.13 -51.92 -0.37 -0.14 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 33 H 0.40 3.43 8.27 -40.82 -0.34 3.10 16 34 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 36 H 0.09 1.55 8.14 -51.93 -0.42 1.13 16 37 H 0.06 1.02 7.31 -51.93 -0.38 0.64 16 38 H 0.05 0.79 7.96 -51.93 -0.41 0.38 16 39 H 0.09 1.40 8.07 -51.93 -0.42 0.98 16 40 H 0.39 9.47 7.90 -40.82 -0.32 9.14 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.05 0.53 7.67 -51.93 -0.40 0.13 16 43 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 44 H 0.09 0.25 8.14 -51.93 -0.42 -0.18 16 45 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 46 H 0.09 0.20 7.13 -51.93 -0.37 -0.17 16 LS Contribution 388.10 15.07 5.85 5.85 Total: -1.00 -33.96 388.10 -8.13 -42.09 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -6.73 Total: 10.17 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.71 Total: 6.18 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -0.74 Total: -55.51 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.22 Total: -24.93 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.96 -8.13 -42.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.660 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds