Wall clock time and date at job start Tue Mar 31 2020 19:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.40362 * 126.44173 * 2 1 4 4 C 1.36544 * 106.70624 * 180.02562 * 3 2 1 5 5 C 1.46653 * 125.98486 * 179.97438 * 4 3 2 6 6 O 1.21694 * 120.00229 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00251 * 180.02562 * 5 4 3 8 8 C 1.46498 * 120.00374 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.90276 * 37.40785 * 8 7 5 10 10 C 1.55136 * 110.99021 * 273.53909 * 8 7 5 11 11 C 1.54316 * 103.02142 * 206.25421 * 10 8 7 12 12 N 1.47445 * 107.22955 * 22.28484 * 11 10 8 13 13 C 1.46902 * 110.99993 * 123.25758 * 12 11 10 14 14 C 1.50702 * 109.47027 * 69.87046 * 13 12 11 15 15 O 1.21293 * 120.00255 * 0.02562 * 14 13 12 16 16 N 1.34783 * 120.00004 * 180.02562 * 14 13 12 17 17 C 1.37092 * 119.99804 * 180.02562 * 16 14 13 18 18 H 1.08002 * 120.00499 * 0.02562 * 17 16 14 19 19 C 1.38956 * 119.99671 * 179.72159 * 17 16 14 20 20 N 1.31414 * 120.00152 * 0.27554 * 19 17 16 21 21 Si 1.86803 * 119.99914 * 180.27723 * 19 17 16 22 22 H 1.48504 * 109.47034 * 59.99919 * 21 19 17 23 23 H 1.48504 * 109.47036 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.46993 * 299.99991 * 21 19 17 25 25 C 1.47847 * 108.56981 * 0.98987 * 12 11 10 26 26 O 1.34913 * 108.02481 * 0.24330 * 4 3 2 27 27 C 1.33928 * 109.38435 * 359.60132 * 26 4 3 28 28 C 1.50703 * 125.61471 * 180.19548 * 27 26 4 29 29 H 1.08995 * 109.47343 * 90.02296 * 1 2 3 30 30 H 1.09009 * 109.47261 * 210.01991 * 1 2 3 31 31 H 1.09002 * 109.47384 * 330.01576 * 1 2 3 32 32 H 1.08006 * 126.64351 * 0.03072 * 3 2 1 33 33 H 0.97008 * 119.99177 * 359.97438 * 7 5 4 34 34 H 1.09003 * 110.70332 * 87.87161 * 10 8 7 35 35 H 1.08996 * 110.85677 * 324.70927 * 10 8 7 36 36 H 1.08996 * 109.89058 * 262.88273 * 11 10 8 37 37 H 1.08994 * 109.88860 * 141.68888 * 11 10 8 38 38 H 1.09004 * 109.47131 * 309.87290 * 13 12 11 39 39 H 1.08994 * 109.47471 * 189.87039 * 13 12 11 40 40 H 0.97000 * 119.99715 * 359.97438 * 16 14 13 41 41 H 0.96991 * 119.99827 * 179.97438 * 20 19 17 42 42 H 1.09002 * 110.37141 * 94.73522 * 25 12 11 43 43 H 1.09002 * 110.37215 * 217.07516 * 25 12 11 44 44 H 1.09004 * 109.47136 * 270.23393 * 28 27 26 45 45 H 1.08993 * 109.47224 * 30.24152 * 28 27 26 46 46 H 1.09002 * 109.47074 * 150.24252 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.1292 0.0000 4 6 3.6260 0.6681 -0.0006 5 6 4.8378 1.4941 -0.0013 6 8 4.7470 2.7076 -0.0019 7 7 6.0521 0.9092 -0.0024 8 6 7.2626 1.7343 -0.0037 9 1 7.1290 2.6218 0.6148 10 6 7.6701 2.1209 -1.4498 11 6 9.1927 2.3435 -1.3343 12 7 9.6536 1.6018 -0.1463 13 6 10.7071 0.6414 -0.5013 14 6 11.9645 1.3873 -0.8665 15 8 11.9817 2.5997 -0.8339 16 7 13.0702 0.7073 -1.2295 17 6 14.2142 1.3859 -1.5613 18 1 14.2297 2.4654 -1.5315 19 6 15.3558 0.6846 -1.9299 20 7 15.3371 -0.6289 -1.9657 21 14 16.9170 1.6090 -2.3746 22 1 17.3563 2.4253 -1.2144 23 1 17.9831 0.6380 -2.7295 24 1 16.6524 2.4985 -3.5339 25 6 8.4930 0.9151 0.4597 26 8 3.5857 -0.6804 -0.0064 27 6 2.3097 -1.0871 -0.0007 28 6 1.8455 -2.5208 -0.0002 29 1 -0.3634 -0.0004 -1.0276 30 1 -0.3634 -0.8899 0.5142 31 1 -0.3634 0.8901 0.5136 32 1 2.0265 2.1625 0.0005 33 1 6.1244 -0.0582 -0.0023 34 1 7.1689 3.0381 -1.7592 35 1 7.4507 1.3103 -2.1446 36 1 9.4040 3.4059 -1.2131 37 1 9.6917 1.9632 -2.2255 38 1 10.3806 0.0416 -1.3509 39 1 10.9056 -0.0109 0.3491 40 1 13.0565 -0.2623 -1.2553 41 1 16.1338 -1.1184 -2.2234 42 1 8.4257 -0.1099 0.0950 43 1 8.5698 0.9277 1.5469 44 1 1.7326 -2.8665 -1.0278 45 1 2.5807 -3.1406 0.5130 46 1 0.8873 -2.5923 0.5144 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266315016.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:29 Heat of formation + Delta-G solvation = -78.329691 kcal Electronic energy + Delta-G solvation = -27825.146559 eV Core-core repulsion = 23715.296195 eV Total energy + Delta-G solvation = -4109.850364 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.78827 -41.18594 -40.28941 -39.03233 -36.07678 -35.71399 -35.22753 -33.31112 -33.07977 -32.14349 -29.93008 -29.51455 -28.34289 -27.10076 -25.92452 -23.71177 -22.47983 -22.22290 -22.05649 -20.92986 -20.65879 -19.84200 -18.99562 -17.79483 -17.67157 -17.58161 -17.01049 -16.63277 -16.44318 -16.13150 -15.80114 -15.62117 -15.46976 -14.77201 -14.66656 -14.60296 -14.47126 -14.14728 -14.03369 -13.79658 -13.66225 -13.61705 -13.55531 -13.31518 -12.99062 -12.94911 -12.80138 -12.56389 -12.47743 -12.42855 -12.37768 -12.11848 -11.82908 -11.55227 -11.48222 -10.77669 -10.37127 -10.30479 -9.99435 -9.39442 -9.26950 -8.45509 -5.93845 -0.06695 1.24736 1.40065 1.41707 1.48264 1.52594 1.97146 2.00512 2.07567 2.30087 2.84866 3.21209 3.28549 3.46346 3.56776 3.69810 3.77348 3.86013 3.98048 4.19683 4.24599 4.28387 4.30963 4.42367 4.46425 4.51835 4.61366 4.67962 4.70767 4.74009 4.80119 4.87074 4.88722 4.93381 5.04196 5.07166 5.11551 5.12567 5.26237 5.41779 5.55147 5.80927 5.84223 5.96770 6.08558 6.33266 6.62500 6.90361 7.14566 7.58198 8.14743 8.71649 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.030398 B = 0.001773 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 920.902201 B =15787.479513 C =16433.162034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.206 4.206 3 C -0.119 4.119 4 C -0.105 4.105 5 C 0.606 3.394 6 O -0.556 6.556 7 N -0.696 5.696 8 C 0.145 3.855 9 H 0.092 0.908 10 C -0.142 4.142 11 C 0.062 3.938 12 N -0.525 5.525 13 C 0.055 3.945 14 C 0.440 3.560 15 O -0.617 6.617 16 N -0.575 5.575 17 C -0.333 4.333 18 H 0.077 0.923 19 C -0.012 4.012 20 N -0.920 5.920 21 Si 0.992 3.008 22 H -0.273 1.273 23 H -0.270 1.270 24 H -0.273 1.273 25 C 0.045 3.955 26 O -0.167 6.167 27 C 0.022 3.978 28 C -0.079 4.079 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.158 0.842 33 H 0.418 0.582 34 H 0.074 0.926 35 H 0.083 0.917 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.101 0.899 45 H 0.088 0.912 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.748 -9.495 3.969 32.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.207 4.207 3 C -0.140 4.140 4 C -0.157 4.157 5 C 0.394 3.606 6 O -0.437 6.437 7 N -0.346 5.346 8 C 0.039 3.961 9 H 0.110 0.890 10 C -0.182 4.182 11 C -0.066 4.066 12 N -0.250 5.250 13 C -0.077 4.077 14 C 0.227 3.773 15 O -0.503 6.503 16 N -0.212 5.212 17 C -0.463 4.463 18 H 0.095 0.905 19 C -0.212 4.212 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.198 1.198 23 H -0.194 1.194 24 H -0.198 1.198 25 C -0.083 4.083 26 O -0.063 6.063 27 C -0.030 4.030 28 C -0.135 4.135 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.088 0.912 32 H 0.176 0.824 33 H 0.255 0.745 34 H 0.093 0.907 35 H 0.101 0.899 36 H 0.077 0.923 37 H 0.062 0.938 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.119 0.881 45 H 0.107 0.893 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -30.125 -7.825 4.304 31.421 hybrid contribution 0.894 -0.483 -0.931 1.379 sum -29.231 -8.308 3.373 30.575 Atomic orbital electron populations 1.20292 0.86391 1.03942 1.03156 1.20591 0.99093 0.90995 1.10002 1.22083 0.90881 1.01287 0.99723 1.21659 0.95710 0.80970 1.17338 1.16688 0.81867 0.86069 0.76017 1.90877 1.86522 1.13870 1.52392 1.45640 1.04172 1.11115 1.73713 1.21955 0.83093 0.94481 0.96549 0.88989 1.23125 0.94921 1.02890 0.97228 1.22538 0.93323 0.99355 0.91377 1.63135 1.08848 1.25239 1.27777 1.21957 0.89901 0.93543 1.02270 1.20820 0.85913 0.88272 0.82317 1.90501 1.85214 1.15852 1.58683 1.41907 1.09963 1.09323 1.60053 1.19609 0.89655 0.92745 1.44293 0.90487 1.26002 1.01875 0.96496 0.96812 1.69658 1.31524 1.06581 1.48319 0.85013 0.76996 0.77779 0.78683 1.19831 1.19403 1.19843 1.23284 0.86735 0.96863 1.01381 1.83980 1.30100 1.20931 1.71323 1.23456 0.79758 0.98991 1.00807 1.20669 1.03131 0.84343 1.05315 0.90469 0.89354 0.91174 0.82444 0.74467 0.90694 0.89886 0.92277 0.93777 0.90807 0.86701 0.76972 0.91328 0.90294 0.88167 0.88080 0.89281 0.86785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.61 10.17 71.24 0.72 0.11 16 2 C -0.21 -2.94 6.14 -20.06 -0.12 -3.06 16 3 C -0.12 -2.33 10.57 22.39 0.24 -2.09 16 4 C -0.11 -2.25 7.13 24.07 0.17 -2.08 16 5 C 0.61 14.94 7.78 86.44 0.67 15.62 16 6 O -0.56 -17.66 16.61 -4.33 -0.07 -17.74 16 7 N -0.70 -13.91 5.23 -439.98 -2.30 -16.21 16 8 C 0.14 3.39 3.31 46.38 0.15 3.54 16 9 H 0.09 2.51 7.73 -2.39 -0.02 2.50 16 10 C -0.14 -3.65 6.64 31.77 0.21 -3.43 16 11 C 0.06 2.05 5.65 86.65 0.49 2.54 16 12 N -0.53 -16.97 4.85 -890.10 -4.32 -21.29 16 13 C 0.05 1.85 5.03 85.56 0.43 2.28 16 14 C 0.44 21.07 7.43 87.66 0.65 21.72 16 15 O -0.62 -34.75 15.12 -3.07 -0.05 -34.80 16 16 N -0.57 -29.57 5.29 -306.97 -1.62 -31.19 16 17 C -0.33 -19.10 9.68 84.04 0.81 -18.29 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 20 N -0.92 -49.61 13.05 21.67 0.28 -49.33 16 21 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 24 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 25 C 0.04 1.01 6.31 86.77 0.55 1.55 16 26 O -0.17 -2.95 10.40 -5.01 -0.05 -3.01 16 27 C 0.02 0.29 7.31 24.97 0.18 0.47 16 28 C -0.08 -0.33 10.21 71.24 0.73 0.40 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.29 7.13 -2.38 -0.02 0.27 16 31 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.16 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.42 6.18 8.27 -92.70 -0.77 5.41 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 37 H 0.04 1.56 7.31 -2.39 -0.02 1.54 16 38 H 0.07 2.18 7.96 -2.38 -0.02 2.16 16 39 H 0.12 3.32 8.07 -2.39 -0.02 3.30 16 40 H 0.40 19.20 7.90 -92.71 -0.73 18.47 16 41 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 42 H 0.08 1.36 7.67 -2.39 -0.02 1.34 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 44 H 0.10 0.20 8.14 -2.38 -0.02 0.18 16 45 H 0.09 0.28 8.14 -2.39 -0.02 0.26 16 46 H 0.11 0.01 7.13 -2.39 -0.02 -0.01 16 Total: -1.00 -76.02 388.10 -0.22 -76.25 By element: Atomic # 1 Polarization: 33.36 SS G_CDS: -0.47 Total: 32.88 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.35 Total: 19.09 kcal Atomic # 7 Polarization: -110.06 SS G_CDS: -7.96 Total: -118.02 kcal Atomic # 8 Polarization: -55.37 SS G_CDS: -0.17 Total: -55.54 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -76.02 -0.22 -76.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315016.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.084 kcal (2) G-P(sol) polarization free energy of solvation -76.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds