Wall clock time and date at job start Tue Mar 31 2020 19:04:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50691 * 1 3 3 C 1.40363 * 126.44412 * 2 1 4 4 C 1.36543 * 106.71032 * 179.97438 * 3 2 1 5 5 C 1.46660 * 125.98721 * 179.97438 * 4 3 2 6 6 O 1.21693 * 120.00333 * 0.02562 * 5 4 3 7 7 N 1.34774 * 119.99771 * 180.02562 * 5 4 3 8 8 C 1.46509 * 119.99927 * 180.02562 * 7 5 4 9 9 H 1.08997 * 110.64086 * 323.30076 * 8 7 5 10 10 C 1.54590 * 110.72159 * 86.45256 * 8 7 5 11 11 C 1.54004 * 105.13802 * 140.49496 * 10 8 7 12 12 N 1.47898 * 107.05442 * 1.22299 * 11 10 8 13 13 C 1.46902 * 110.99974 * 214.15474 * 12 11 10 14 14 C 1.50697 * 109.47354 * 176.64065 * 13 12 11 15 15 O 1.21299 * 119.99898 * 6.13559 * 14 13 12 16 16 N 1.34779 * 120.00182 * 186.40994 * 14 13 12 17 17 C 1.37094 * 120.00139 * 179.72668 * 16 14 13 18 18 H 1.08002 * 120.00011 * 359.97438 * 17 16 14 19 19 C 1.38945 * 120.00079 * 180.02562 * 17 16 14 20 20 N 1.31413 * 119.99780 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 120.00079 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47064 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.46933 * 119.99698 * 21 19 17 24 24 H 1.48503 * 109.46571 * 239.99757 * 21 19 17 25 25 C 1.48529 * 105.82565 * 334.66947 * 12 11 10 26 26 O 1.34913 * 108.02416 * 0.23182 * 4 3 2 27 27 C 1.33924 * 109.38479 * 359.61547 * 26 4 3 28 28 C 1.50700 * 125.62020 * 180.12892 * 27 26 4 29 29 H 1.09008 * 109.47142 * 90.02852 * 1 2 3 30 30 H 1.09006 * 109.47346 * 210.02070 * 1 2 3 31 31 H 1.08996 * 109.47418 * 330.02806 * 1 2 3 32 32 H 1.07997 * 126.64344 * 359.96620 * 3 2 1 33 33 H 0.97003 * 120.00298 * 359.97438 * 7 5 4 34 34 H 1.08998 * 110.31433 * 21.58094 * 10 8 7 35 35 H 1.08998 * 110.31257 * 259.40775 * 10 8 7 36 36 H 1.08994 * 109.91482 * 241.87062 * 11 10 8 37 37 H 1.08999 * 110.08067 * 120.66496 * 11 10 8 38 38 H 1.09000 * 109.47070 * 56.63678 * 13 12 11 39 39 H 1.09004 * 109.46925 * 296.64079 * 13 12 11 40 40 H 0.97005 * 119.99449 * 359.72797 * 16 14 13 41 41 H 0.97002 * 119.99956 * 180.02562 * 20 19 17 42 42 H 1.08995 * 110.67280 * 157.63942 * 25 12 11 43 43 H 1.08997 * 110.66774 * 280.77751 * 25 12 11 44 44 H 1.09000 * 109.47496 * 270.30238 * 28 27 26 45 45 H 1.09002 * 109.46980 * 30.29467 * 28 27 26 46 46 H 1.08991 * 109.47679 * 150.29790 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3407 1.1291 0.0000 4 6 3.6260 0.6681 0.0006 5 6 4.8378 1.4941 0.0003 6 8 4.7471 2.7077 -0.0001 7 7 6.0520 0.9092 0.0004 8 6 7.2626 1.7343 0.0007 9 1 7.1196 2.6265 -0.6089 10 6 7.6640 2.1162 1.4439 11 6 9.2007 2.0190 1.4730 12 7 9.6369 1.6348 0.1130 13 6 10.8233 0.7702 0.1653 14 6 11.1883 0.3331 -1.2299 15 8 10.5960 0.7922 -2.1837 16 7 12.1691 -0.5721 -1.4177 17 6 12.4974 -0.9740 -2.6866 18 1 11.9697 -0.5655 -3.5359 19 6 13.5081 -1.9075 -2.8801 20 7 14.1497 -2.4049 -1.8468 21 14 13.9549 -2.4556 -4.6092 22 1 13.0901 -1.7522 -5.5903 23 1 15.3781 -2.1292 -4.8796 24 1 13.7511 -3.9214 -4.7319 25 6 8.4849 0.9215 -0.4954 26 8 3.5857 -0.6804 -0.0043 27 6 2.3097 -1.0871 0.0006 28 6 1.8454 -2.5208 0.0003 29 1 -0.3634 -0.0005 -1.0277 30 1 -0.3634 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 2.0265 2.1624 -0.0005 33 1 6.1244 -0.0582 0.0011 34 1 7.2272 1.4160 2.1559 35 1 7.3450 3.1339 1.6686 36 1 9.5112 1.2600 2.1909 37 1 9.6316 2.9833 1.7426 38 1 10.6074 -0.1065 0.7760 39 1 11.6557 1.3215 0.6028 40 1 12.6427 -0.9393 -0.6548 41 1 14.8556 -3.0564 -1.9819 42 1 8.5477 0.9467 -1.5833 43 1 8.4352 -0.1062 -0.1356 44 1 1.7342 -2.8665 -1.0274 45 1 2.5799 -3.1406 0.5145 46 1 0.8865 -2.5923 0.5134 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266315017.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:33 Heat of formation + Delta-G solvation = -77.572117 kcal Electronic energy + Delta-G solvation = -28153.721751 eV Core-core repulsion = 24043.904237 eV Total energy + Delta-G solvation = -4109.817513 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.81130 -41.20027 -40.31985 -38.98274 -36.08584 -35.75410 -35.26269 -33.33459 -33.10197 -32.17802 -29.86856 -29.47393 -28.34304 -27.16452 -25.93668 -23.74436 -22.57298 -22.30252 -21.66575 -21.08151 -20.66627 -19.86924 -19.01957 -17.92746 -17.64908 -17.58893 -16.85484 -16.66264 -16.49506 -16.02560 -15.92365 -15.69517 -15.51046 -14.89227 -14.66123 -14.62552 -14.29036 -14.14472 -14.04125 -13.87104 -13.68723 -13.62523 -13.58030 -13.22545 -12.97807 -12.97225 -12.88370 -12.55810 -12.46620 -12.40960 -12.36091 -12.11600 -11.77079 -11.54533 -11.47951 -10.79139 -10.38460 -10.25896 -10.01118 -9.41349 -9.38386 -8.47499 -5.95734 -0.08503 1.23056 1.35540 1.41232 1.48753 1.55132 1.97278 1.99563 2.03703 2.28062 2.84516 3.19482 3.33557 3.40691 3.58440 3.72235 3.75943 3.85097 4.00200 4.19950 4.26811 4.28946 4.30084 4.42334 4.44281 4.54459 4.65245 4.65653 4.68436 4.73018 4.85080 4.87308 4.87947 5.02338 5.03702 5.06187 5.09651 5.10561 5.24934 5.40947 5.54119 5.78429 5.80054 5.90435 6.07023 6.29947 6.59888 6.86786 7.12574 7.55406 8.11300 8.70075 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.013612 B = 0.002252 C = 0.002027 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2056.566888 B =12428.096575 C =13810.229053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.204 4.204 3 C -0.116 4.116 4 C -0.108 4.108 5 C 0.606 3.394 6 O -0.555 6.555 7 N -0.701 5.701 8 C 0.147 3.853 9 H 0.084 0.916 10 C -0.129 4.129 11 C 0.038 3.962 12 N -0.512 5.512 13 C 0.050 3.950 14 C 0.439 3.561 15 O -0.616 6.616 16 N -0.572 5.572 17 C -0.330 4.330 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.920 5.920 21 Si 0.991 3.009 22 H -0.275 1.275 23 H -0.271 1.271 24 H -0.270 1.270 25 C 0.043 3.957 26 O -0.171 6.171 27 C 0.020 3.980 28 C -0.079 4.079 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.161 0.839 33 H 0.413 0.587 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.094 0.906 38 H 0.074 0.926 39 H 0.115 0.885 40 H 0.396 0.604 41 H 0.277 0.723 42 H 0.073 0.927 43 H 0.051 0.949 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.437 -0.947 11.012 26.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.205 4.205 3 C -0.137 4.137 4 C -0.159 4.159 5 C 0.394 3.606 6 O -0.435 6.435 7 N -0.351 5.351 8 C 0.041 3.959 9 H 0.102 0.898 10 C -0.168 4.168 11 C -0.089 4.089 12 N -0.237 5.237 13 C -0.081 4.081 14 C 0.226 3.774 15 O -0.502 6.502 16 N -0.210 5.210 17 C -0.460 4.460 18 H 0.096 0.904 19 C -0.213 4.213 20 N -0.561 5.561 21 Si 0.815 3.185 22 H -0.199 1.199 23 H -0.197 1.197 24 H -0.195 1.195 25 C -0.085 4.085 26 O -0.068 6.068 27 C -0.032 4.032 28 C -0.135 4.135 29 H 0.095 0.905 30 H 0.107 0.893 31 H 0.091 0.909 32 H 0.179 0.821 33 H 0.250 0.750 34 H 0.103 0.897 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.113 0.887 38 H 0.092 0.908 39 H 0.133 0.867 40 H 0.230 0.770 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.118 0.882 45 H 0.105 0.895 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -24.274 0.349 10.090 26.289 hybrid contribution 0.776 -1.276 -0.180 1.504 sum -23.497 -0.926 9.910 25.518 Atomic orbital electron populations 1.20295 0.86146 1.04045 1.03193 1.20609 0.99181 0.90857 1.09883 1.22086 0.90613 1.01377 0.99576 1.21713 0.95855 0.80919 1.17456 1.16690 0.81740 0.86155 0.76049 1.90852 1.86504 1.13592 1.52552 1.45801 1.04634 1.11068 1.73643 1.21797 0.82427 0.93870 0.97789 0.89802 1.22746 0.95227 1.03376 0.95481 1.22991 0.94399 1.02652 0.88873 1.64431 1.02928 1.38086 1.18287 1.21995 0.95615 0.97133 0.93365 1.20742 0.82627 0.82150 0.91880 1.90486 1.55629 1.59441 1.44618 1.41926 1.32576 1.37845 1.08647 1.19665 1.17904 1.22750 0.85645 0.90412 1.26019 0.95766 0.96358 1.03154 1.69674 1.24308 1.30569 1.31510 0.84892 0.78152 0.78145 0.77277 1.19945 1.19658 1.19522 1.23289 0.88839 0.95358 1.01044 1.83993 1.30302 1.21145 1.71349 1.23482 0.79739 0.99090 1.00927 1.20668 1.03160 0.84394 1.05261 0.90479 0.89321 0.90929 0.82100 0.75018 0.89708 0.89980 0.91522 0.88749 0.90824 0.86713 0.76962 0.91310 0.90823 0.93055 0.88218 0.89506 0.86498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.74 10.16 71.23 0.72 -0.02 16 2 C -0.20 -3.42 6.14 -20.06 -0.12 -3.54 16 3 C -0.12 -2.55 10.57 22.39 0.24 -2.31 16 4 C -0.11 -2.70 7.13 24.07 0.17 -2.53 16 5 C 0.61 17.28 7.78 86.44 0.67 17.96 16 6 O -0.55 -19.02 16.59 -4.33 -0.07 -19.09 16 7 N -0.70 -18.04 5.14 -440.80 -2.27 -20.31 16 8 C 0.15 4.15 3.34 46.19 0.15 4.30 16 9 H 0.08 2.76 7.69 -2.39 -0.02 2.75 16 10 C -0.13 -2.99 6.67 31.47 0.21 -2.78 16 11 C 0.04 0.90 6.70 86.45 0.58 1.48 16 12 N -0.51 -16.70 5.11 -887.58 -4.53 -21.24 16 13 C 0.05 1.71 5.30 85.56 0.45 2.16 16 14 C 0.44 20.72 7.42 87.66 0.65 21.37 16 15 O -0.62 -33.91 13.87 -3.09 -0.04 -33.95 16 16 N -0.57 -29.11 5.29 -306.98 -1.62 -30.74 16 17 C -0.33 -18.67 9.68 84.04 0.81 -17.85 16 18 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 19 C -0.01 -0.70 5.50 84.92 0.47 -0.24 16 20 N -0.92 -49.27 13.05 21.66 0.28 -48.98 16 21 Si 0.99 42.92 29.55 68.60 2.03 44.95 16 22 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 24 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 25 C 0.04 1.42 5.20 86.65 0.45 1.87 16 26 O -0.17 -3.77 10.40 -4.97 -0.05 -3.82 16 27 C 0.02 0.33 7.31 24.97 0.18 0.51 16 28 C -0.08 -0.59 10.21 71.24 0.73 0.14 16 29 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.09 0.44 7.13 -2.38 -0.02 0.42 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.41 9.21 8.29 -92.71 -0.77 8.44 16 34 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 35 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 36 H 0.07 1.32 7.68 -2.39 -0.02 1.30 16 37 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.07 2.16 7.98 -2.39 -0.02 2.15 16 39 H 0.11 3.45 8.14 -2.38 -0.02 3.43 16 40 H 0.40 19.07 7.90 -92.70 -0.73 18.34 16 41 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 42 H 0.07 3.05 6.43 -2.39 -0.02 3.03 16 43 H 0.05 1.57 7.89 -2.39 -0.02 1.55 16 44 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 45 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 46 H 0.12 0.30 7.12 -2.39 -0.02 0.28 16 Total: -1.00 -73.97 386.13 -0.39 -74.36 By element: Atomic # 1 Polarization: 38.77 SS G_CDS: -0.47 Total: 38.30 kcal Atomic # 6 Polarization: 14.15 SS G_CDS: 6.37 Total: 20.52 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -8.14 Total: -121.26 kcal Atomic # 8 Polarization: -56.70 SS G_CDS: -0.17 Total: -56.86 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Total: -73.97 -0.39 -74.36 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266315017.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.213 kcal (2) G-P(sol) polarization free energy of solvation -73.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds