Wall clock time and date at job start Tue Mar 31 2020 19:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34183 * 127.02653 * 2 1 4 4 O 1.34207 * 109.12414 * 180.27023 * 3 2 1 5 5 C 1.33648 * 110.91069 * 359.70159 * 4 3 2 6 6 C 1.50706 * 125.80338 * 180.02562 * 5 4 3 7 7 C 1.36416 * 108.39578 * 0.02562 * 5 4 3 8 8 C 1.47383 * 127.19117 * 180.02562 * 7 5 4 9 9 O 1.21614 * 120.00474 * 90.02275 * 8 7 5 10 10 N 1.34778 * 119.99744 * 270.02235 * 8 7 5 11 11 C 1.46500 * 119.99919 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.85132 * 25.33083 * 11 10 8 13 13 C 1.53781 * 113.61711 * 156.52821 * 11 10 8 14 14 C 1.53785 * 87.08277 * 89.19510 * 13 11 10 15 15 H 1.08999 * 113.61409 * 270.80258 * 14 13 11 16 16 N 1.46901 * 113.61190 * 139.98033 * 14 13 11 17 17 C 1.46903 * 110.99653 * 155.00141 * 16 14 13 18 18 C 1.50703 * 109.46773 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99983 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99740 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00035 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99862 * 0.02562 * 21 20 18 23 23 C 1.38942 * 119.99797 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00522 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99719 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47178 * 89.99870 * 25 23 21 27 27 H 1.48497 * 109.47319 * 209.99582 * 25 23 21 28 28 H 1.48495 * 109.47336 * 330.00160 * 25 23 21 29 29 C 1.53776 * 87.07661 * 25.43397 * 14 13 11 30 30 H 1.09001 * 109.47266 * 270.20777 * 1 2 3 31 31 H 1.09000 * 109.46551 * 30.20354 * 1 2 3 32 32 H 1.08991 * 109.47190 * 150.19910 * 1 2 3 33 33 H 1.08003 * 125.43058 * 359.97181 * 3 2 1 34 34 H 1.08997 * 109.47209 * 270.00343 * 6 5 4 35 35 H 1.09004 * 109.46984 * 30.00160 * 6 5 4 36 36 H 1.09006 * 109.47076 * 150.00116 * 6 5 4 37 37 H 0.96998 * 120.00229 * 359.97438 * 10 8 7 38 38 H 1.08993 * 113.62030 * 203.74957 * 13 11 10 39 39 H 1.09006 * 113.61109 * 334.56882 * 13 11 10 40 40 H 1.00901 * 110.99655 * 31.04993 * 16 14 13 41 41 H 1.08992 * 109.47358 * 300.00306 * 17 16 14 42 42 H 1.08998 * 109.46626 * 60.00604 * 17 16 14 43 43 H 0.96999 * 119.99999 * 0.02562 * 20 18 17 44 44 H 0.96996 * 120.00054 * 179.97438 * 24 23 21 45 45 H 1.09003 * 113.61687 * 220.01420 * 29 14 13 46 46 H 1.09009 * 113.61565 * 89.11769 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0713 0.0000 4 8 3.5921 0.6587 -0.0060 5 6 3.6623 -0.6759 -0.0035 6 6 4.9291 -1.4922 -0.0081 7 6 2.3922 -1.1738 0.0038 8 6 1.9913 -2.5920 0.0092 9 8 1.8305 -3.1745 1.0646 10 7 1.8029 -3.2435 -1.1555 11 6 1.4038 -4.6530 -1.1501 12 1 0.8787 -4.9409 -0.2393 13 6 0.6906 -5.0964 -2.4384 14 6 2.0818 -5.4392 -2.9971 15 1 2.5646 -4.6061 -3.5079 16 7 2.1118 -6.6825 -3.7790 17 6 3.2191 -6.6707 -4.7442 18 6 3.2181 -7.9593 -5.5256 19 8 2.3774 -8.8041 -5.3008 20 7 4.1515 -8.1730 -6.4741 21 6 4.1504 -9.3451 -7.1853 22 1 3.4012 -10.0970 -6.9858 23 6 5.1129 -9.5655 -8.1627 24 7 6.0248 -8.6508 -8.4052 25 14 5.1118 -11.1628 -9.1313 26 1 4.2719 -11.0047 -10.3458 27 1 6.5015 -11.5004 -9.5311 28 1 4.5608 -12.2532 -8.2871 29 6 2.5367 -5.6174 -1.5390 30 1 -0.3634 0.0037 1.0277 31 1 -0.3632 0.8882 -0.5170 32 1 -0.3633 -0.8917 -0.5107 33 1 1.9895 2.1011 -0.0004 34 1 5.2295 -1.6911 -1.0368 35 1 5.7191 -0.9397 0.5008 36 1 4.7550 -2.4361 0.5086 37 1 1.9308 -2.7789 -1.9973 38 1 0.0474 -5.9660 -2.3044 39 1 0.1956 -4.2810 -2.9661 40 1 1.2295 -6.8393 -4.2428 41 1 3.0964 -5.8307 -5.4278 42 1 4.1646 -6.5702 -4.2112 43 1 4.8241 -7.4975 -6.6535 44 1 6.6970 -8.8049 -9.0873 45 1 3.5333 -5.2227 -1.3412 46 1 2.3983 -6.6297 -1.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266588823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:23 Heat of formation + Delta-G solvation = -40.369512 kcal Electronic energy + Delta-G solvation = -27798.955691 eV Core-core repulsion = 23690.751403 eV Total energy + Delta-G solvation = -4108.204287 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.92791 -40.31703 -38.65238 -37.94316 -34.59230 -34.32061 -33.80827 -32.98507 -32.22176 -31.19687 -28.58881 -27.10330 -26.73329 -25.81826 -24.68494 -23.73720 -22.51601 -20.58396 -20.08736 -19.56946 -19.13056 -18.12228 -17.88196 -16.84802 -16.49466 -16.07948 -16.02276 -15.35557 -15.14450 -14.99901 -14.60362 -14.51835 -14.23986 -13.89645 -13.67812 -13.66608 -13.62726 -13.35853 -13.29998 -13.05580 -12.76685 -12.56717 -12.42747 -12.05902 -11.96991 -11.72701 -11.58750 -11.38917 -11.05215 -10.63763 -10.57210 -10.40026 -10.34679 -10.22339 -9.79058 -9.51999 -9.27927 -8.86180 -8.45724 -8.09292 -7.97002 -6.42736 -3.83569 1.24261 1.83373 2.24144 2.45601 2.96149 3.17097 3.25876 3.32055 3.89772 4.06717 4.10338 4.33782 4.35767 4.39219 4.47410 4.55742 4.71366 4.81977 4.89356 4.95962 5.03676 5.18038 5.19006 5.23273 5.25536 5.28672 5.39749 5.44948 5.51170 5.61542 5.69798 5.75546 5.75616 5.85229 5.89151 5.99897 6.02473 6.06897 6.24482 6.41856 6.67983 7.20544 7.25583 7.54335 7.64282 7.93243 8.05413 8.60200 9.16930 9.53267 10.04665 10.75007 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.001868 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.039951 B =14986.080161 C =15695.823370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.149 4.149 3 C -0.040 4.040 4 O -0.172 6.172 5 C 0.048 3.952 6 C -0.083 4.083 7 C -0.233 4.233 8 C 0.597 3.403 9 O -0.529 6.529 10 N -0.702 5.702 11 C 0.117 3.883 12 H 0.105 0.895 13 C -0.147 4.147 14 C 0.059 3.941 15 H 0.069 0.931 16 N -0.655 5.655 17 C 0.050 3.950 18 C 0.440 3.560 19 O -0.583 6.583 20 N -0.564 5.564 21 C -0.299 4.299 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.284 1.284 28 H -0.269 1.269 29 C -0.134 4.134 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.067 0.933 33 H 0.207 0.793 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.402 0.598 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.351 0.649 41 H 0.043 0.957 42 H 0.085 0.915 43 H 0.392 0.608 44 H 0.271 0.729 45 H 0.066 0.934 46 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.211 22.168 14.863 27.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.150 4.150 3 C -0.106 4.106 4 O -0.069 6.069 5 C -0.004 4.004 6 C -0.140 4.140 7 C -0.238 4.238 8 C 0.382 3.618 9 O -0.405 6.405 10 N -0.353 5.353 11 C 0.011 3.989 12 H 0.123 0.877 13 C -0.186 4.186 14 C -0.051 4.051 15 H 0.087 0.913 16 N -0.287 5.287 17 C -0.083 4.083 18 C 0.226 3.774 19 O -0.467 6.467 20 N -0.201 5.201 21 C -0.429 4.429 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.174 4.174 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.224 0.776 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.111 0.889 37 H 0.236 0.764 38 H 0.123 0.877 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.061 0.939 42 H 0.103 0.897 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.085 0.915 46 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.149 20.982 16.097 27.151 hybrid contribution 0.133 0.577 -1.811 1.905 sum -6.016 21.559 14.287 26.553 Atomic orbital electron populations 1.20195 0.88559 1.02861 1.02647 1.21346 0.96829 0.90508 1.06355 1.23637 0.79585 0.99571 1.07810 1.83731 1.29614 1.21886 1.71634 1.22580 0.96063 0.80806 1.00924 1.20493 0.91129 0.97968 1.04377 1.20995 0.93252 0.93891 1.15631 1.17263 0.76259 0.84485 0.83760 1.90819 1.50323 1.68263 1.31111 1.45726 1.69611 1.11572 1.08405 1.21814 0.97412 0.80084 0.99582 0.87674 1.23604 0.97097 1.02024 0.95840 1.23103 0.96131 0.91503 0.94400 0.91328 1.60222 1.07375 1.32803 1.28348 1.21733 0.96019 0.96591 0.93936 1.19826 0.84893 0.89059 0.83647 1.90522 1.40143 1.46765 1.69305 1.41872 1.27443 1.18503 1.32258 1.19705 1.13531 0.95370 1.14249 0.87914 1.25266 0.95607 0.99221 0.97905 1.69611 1.16601 1.34461 1.33690 0.85852 0.77331 0.81479 0.79597 1.20434 1.20922 1.19388 1.23544 0.98089 1.00234 0.95523 0.90948 0.91055 0.91417 0.77620 0.89095 0.89645 0.88903 0.76366 0.87665 0.91045 0.82884 0.93948 0.89679 0.77483 0.91879 0.91527 0.87988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.38 36.01 0.37 -0.20 16 2 C -0.15 -1.28 6.38 -102.49 -0.65 -1.93 16 3 C -0.04 -0.29 11.96 29.30 0.35 0.06 16 4 O -0.17 -1.53 10.52 7.69 0.08 -1.44 16 5 C 0.05 0.44 7.37 -34.96 -0.26 0.18 16 6 C -0.08 -0.56 10.24 36.01 0.37 -0.20 16 7 C -0.23 -2.39 6.07 -103.28 -0.63 -3.01 16 8 C 0.60 6.91 7.25 -12.54 -0.09 6.81 16 9 O -0.53 -8.14 16.73 5.27 0.09 -8.05 16 10 N -0.70 -6.53 5.26 -54.10 -0.28 -6.82 16 11 C 0.12 1.17 4.30 -67.12 -0.29 0.88 16 12 H 0.11 1.19 7.50 -51.93 -0.39 0.80 16 13 C -0.15 -1.37 7.39 -25.92 -0.19 -1.57 16 14 C 0.06 0.67 4.03 -66.90 -0.27 0.40 16 15 H 0.07 0.72 7.87 -51.93 -0.41 0.31 16 16 N -0.66 -10.11 6.18 -107.13 -0.66 -10.77 16 17 C 0.05 0.86 6.01 -4.97 -0.03 0.83 16 18 C 0.44 10.32 7.82 -10.98 -0.09 10.23 16 19 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 20 N -0.56 -14.24 5.29 -10.96 -0.06 -14.30 16 21 C -0.30 -8.33 9.68 -14.94 -0.14 -8.47 16 22 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.46 13.05 55.50 0.72 -23.73 16 25 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 26 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 28 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 29 C -0.13 -1.52 7.68 -25.92 -0.20 -1.71 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.21 0.68 8.06 -52.48 -0.42 0.25 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.09 0.69 7.93 -51.93 -0.41 0.28 16 37 H 0.40 2.99 8.69 -40.82 -0.35 2.64 16 38 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.35 5.56 8.25 -39.29 -0.32 5.24 16 41 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 42 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 45 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 46 H 0.10 1.27 8.14 -51.92 -0.42 0.85 16 LS Contribution 396.96 15.07 5.98 5.98 Total: -1.00 -34.59 396.96 -7.70 -42.29 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: -6.79 Total: 13.75 kcal Atomic # 6 Polarization: 4.64 SS G_CDS: -1.84 Total: 2.80 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: -0.28 Total: -55.63 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.26 Total: -25.18 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.59 -7.70 -42.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266588823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.918 kcal (2) G-P(sol) polarization free energy of solvation -34.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds