Wall clock time and date at job start Tue Mar 31 2020 19:04:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.34183 * 127.02653 * 2 1 4 4 O 1.34207 * 109.12414 * 180.27023 * 3 2 1 5 5 C 1.33648 * 110.91069 * 359.70159 * 4 3 2 6 6 C 1.50706 * 125.80338 * 180.02562 * 5 4 3 7 7 C 1.36416 * 108.39578 * 0.02562 * 5 4 3 8 8 C 1.47383 * 127.19117 * 180.02562 * 7 5 4 9 9 O 1.21614 * 120.00474 * 90.02275 * 8 7 5 10 10 N 1.34778 * 119.99744 * 270.02235 * 8 7 5 11 11 C 1.46500 * 119.99919 * 180.02562 * 10 8 7 12 12 H 1.09002 * 112.85132 * 25.33083 * 11 10 8 13 13 C 1.53781 * 113.61711 * 156.52821 * 11 10 8 14 14 C 1.53785 * 87.08277 * 89.19510 * 13 11 10 15 15 H 1.08999 * 113.61409 * 270.80258 * 14 13 11 16 16 N 1.46901 * 113.61190 * 139.98033 * 14 13 11 17 17 C 1.46903 * 110.99653 * 155.00141 * 16 14 13 18 18 C 1.50703 * 109.46773 * 179.97438 * 17 16 14 19 19 O 1.21287 * 119.99983 * 0.02562 * 18 17 16 20 20 N 1.34779 * 119.99740 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00035 * 180.02562 * 20 18 17 22 22 H 1.08001 * 119.99862 * 0.02562 * 21 20 18 23 23 C 1.38942 * 119.99797 * 180.02562 * 21 20 18 24 24 N 1.31414 * 120.00522 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99719 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.47178 * 89.99870 * 25 23 21 27 27 H 1.48497 * 109.47319 * 209.99582 * 25 23 21 28 28 H 1.48495 * 109.47336 * 330.00160 * 25 23 21 29 29 C 1.53776 * 87.07661 * 25.43397 * 14 13 11 30 30 H 1.09001 * 109.47266 * 270.20777 * 1 2 3 31 31 H 1.09000 * 109.46551 * 30.20354 * 1 2 3 32 32 H 1.08991 * 109.47190 * 150.19910 * 1 2 3 33 33 H 1.08003 * 125.43058 * 359.97181 * 3 2 1 34 34 H 1.08997 * 109.47209 * 270.00343 * 6 5 4 35 35 H 1.09004 * 109.46984 * 30.00160 * 6 5 4 36 36 H 1.09006 * 109.47076 * 150.00116 * 6 5 4 37 37 H 0.96998 * 120.00229 * 359.97438 * 10 8 7 38 38 H 1.08993 * 113.62030 * 203.74957 * 13 11 10 39 39 H 1.09006 * 113.61109 * 334.56882 * 13 11 10 40 40 H 1.00901 * 110.99655 * 31.04993 * 16 14 13 41 41 H 1.08992 * 109.47358 * 300.00306 * 17 16 14 42 42 H 1.08998 * 109.46626 * 60.00604 * 17 16 14 43 43 H 0.96999 * 119.99999 * 0.02562 * 20 18 17 44 44 H 0.96996 * 120.00054 * 179.97438 * 24 23 21 45 45 H 1.09003 * 113.61687 * 220.01420 * 29 14 13 46 46 H 1.09009 * 113.61565 * 89.11769 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3151 1.0713 0.0000 4 8 3.5921 0.6587 -0.0060 5 6 3.6623 -0.6759 -0.0035 6 6 4.9291 -1.4922 -0.0081 7 6 2.3922 -1.1738 0.0038 8 6 1.9913 -2.5920 0.0092 9 8 1.8305 -3.1745 1.0646 10 7 1.8029 -3.2435 -1.1555 11 6 1.4038 -4.6530 -1.1501 12 1 0.8787 -4.9409 -0.2393 13 6 0.6906 -5.0964 -2.4384 14 6 2.0818 -5.4392 -2.9971 15 1 2.5646 -4.6061 -3.5079 16 7 2.1118 -6.6825 -3.7790 17 6 3.2191 -6.6707 -4.7442 18 6 3.2181 -7.9593 -5.5256 19 8 2.3774 -8.8041 -5.3008 20 7 4.1515 -8.1730 -6.4741 21 6 4.1504 -9.3451 -7.1853 22 1 3.4012 -10.0970 -6.9858 23 6 5.1129 -9.5655 -8.1627 24 7 6.0248 -8.6508 -8.4052 25 14 5.1118 -11.1628 -9.1313 26 1 4.2719 -11.0047 -10.3458 27 1 6.5015 -11.5004 -9.5311 28 1 4.5608 -12.2532 -8.2871 29 6 2.5367 -5.6174 -1.5390 30 1 -0.3634 0.0037 1.0277 31 1 -0.3632 0.8882 -0.5170 32 1 -0.3633 -0.8917 -0.5107 33 1 1.9895 2.1011 -0.0004 34 1 5.2295 -1.6911 -1.0368 35 1 5.7191 -0.9397 0.5008 36 1 4.7550 -2.4361 0.5086 37 1 1.9308 -2.7789 -1.9973 38 1 0.0474 -5.9660 -2.3044 39 1 0.1956 -4.2810 -2.9661 40 1 1.2295 -6.8393 -4.2428 41 1 3.0964 -5.8307 -5.4278 42 1 4.1646 -6.5702 -4.2112 43 1 4.8241 -7.4975 -6.6535 44 1 6.6970 -8.8049 -9.0873 45 1 3.5333 -5.2227 -1.3412 46 1 2.3983 -6.6297 -1.1590 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266588823.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:22 Heat of formation + Delta-G solvation = -66.409146 kcal Electronic energy + Delta-G solvation = -27800.084854 eV Core-core repulsion = 23690.751403 eV Total energy + Delta-G solvation = -4109.333451 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.55306 -41.23263 -40.14526 -39.28253 -36.13648 -35.43016 -34.94803 -33.74117 -33.29621 -33.03637 -29.20242 -28.46979 -27.44677 -26.71140 -26.20616 -24.83725 -23.47983 -21.36903 -21.09553 -20.68944 -20.33950 -19.88737 -18.81264 -17.93231 -17.49052 -17.08241 -16.87052 -16.78053 -16.40329 -16.14045 -16.04244 -15.58070 -15.52898 -15.18888 -14.85299 -14.48383 -14.32549 -14.16292 -14.09698 -13.80373 -13.59199 -13.52500 -13.41759 -13.29953 -13.27397 -13.10568 -12.88451 -12.59860 -12.41380 -12.30398 -12.12384 -11.55080 -11.50884 -11.49485 -11.28305 -10.46932 -10.33870 -10.14883 -10.01461 -9.45267 -9.30714 -8.46735 -5.95384 0.60470 1.22248 1.36435 1.38035 1.42033 1.54739 1.84988 2.05534 2.19911 2.29345 2.96404 3.20678 3.47556 3.51619 3.53047 3.61842 3.73233 3.93835 3.97657 4.12136 4.19458 4.30533 4.35598 4.47744 4.55203 4.56119 4.59803 4.61836 4.74629 4.74793 4.81660 4.86687 4.96324 4.97656 5.01963 5.06864 5.12960 5.18765 5.41017 5.46097 5.50649 5.93435 6.06572 6.16454 6.41507 6.43909 6.60335 7.09514 7.12764 7.56524 8.11851 8.70602 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.020211 B = 0.001868 C = 0.001783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.039951 B =14986.080161 C =15695.823370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.169 4.169 3 C -0.030 4.030 4 O -0.179 6.179 5 C 0.043 3.957 6 C -0.084 4.084 7 C -0.260 4.260 8 C 0.601 3.399 9 O -0.576 6.576 10 N -0.687 5.687 11 C 0.123 3.877 12 H 0.092 0.908 13 C -0.132 4.132 14 C 0.061 3.939 15 H 0.089 0.911 16 N -0.671 5.671 17 C 0.065 3.935 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.574 5.574 21 C -0.334 4.334 22 H 0.078 0.922 23 C -0.014 4.014 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.270 1.270 27 H -0.271 1.271 28 H -0.274 1.274 29 C -0.136 4.136 30 H 0.068 0.932 31 H 0.096 0.904 32 H 0.057 0.943 33 H 0.245 0.755 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.414 0.586 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.347 0.653 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.397 0.603 44 H 0.278 0.722 45 H 0.066 0.934 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.030 24.174 14.139 28.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.171 4.171 3 C -0.096 4.096 4 O -0.075 6.075 5 C -0.009 4.009 6 C -0.140 4.140 7 C -0.264 4.264 8 C 0.387 3.613 9 O -0.455 6.455 10 N -0.338 5.338 11 C 0.017 3.983 12 H 0.110 0.890 13 C -0.170 4.170 14 C -0.049 4.049 15 H 0.107 0.893 16 N -0.303 5.303 17 C -0.067 4.067 18 C 0.224 3.776 19 O -0.510 6.510 20 N -0.211 5.211 21 C -0.463 4.463 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.816 3.184 26 H -0.195 1.195 27 H -0.196 1.196 28 H -0.199 1.199 29 C -0.176 4.176 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.076 0.924 33 H 0.261 0.739 34 H 0.124 0.876 35 H 0.118 0.882 36 H 0.100 0.900 37 H 0.251 0.749 38 H 0.121 0.879 39 H 0.111 0.889 40 H 0.167 0.833 41 H 0.088 0.912 42 H 0.118 0.882 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.085 0.915 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.954 23.029 15.346 28.307 hybrid contribution 0.062 -0.001 -1.531 1.533 sum -5.891 23.028 13.815 27.493 Atomic orbital electron populations 1.20222 0.87528 1.03630 1.02652 1.21643 0.97769 0.90295 1.07391 1.24377 0.78618 1.00858 1.05703 1.83750 1.30569 1.21607 1.71573 1.22913 0.96413 0.81155 1.00389 1.20568 0.90728 0.97316 1.05348 1.21073 0.94445 0.93511 1.17377 1.17488 0.75327 0.85006 0.83437 1.90791 1.52602 1.69378 1.32749 1.45596 1.68529 1.11135 1.08491 1.21657 0.96926 0.80212 0.99499 0.89034 1.23509 0.96146 1.02531 0.94834 1.23214 0.97734 0.90437 0.93523 0.89350 1.60191 1.06636 1.35527 1.27976 1.21588 0.97470 0.93497 0.94144 1.20937 0.83242 0.90585 0.82807 1.90491 1.41446 1.48832 1.70256 1.41944 1.28225 1.18073 1.32854 1.19659 1.14153 0.96370 1.16133 0.90368 1.26037 0.94819 1.02298 0.98187 1.69667 1.16746 1.35697 1.33982 0.84931 0.77884 0.77411 0.78137 1.19535 1.19571 1.19889 1.23513 0.98535 0.99773 0.95757 0.91329 0.88550 0.92361 0.73880 0.87622 0.88208 0.90040 0.74921 0.87869 0.88901 0.83258 0.91232 0.88247 0.76956 0.91297 0.91488 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.00 10.38 71.24 0.74 -0.26 16 2 C -0.17 -2.67 6.38 -18.49 -0.12 -2.78 16 3 C -0.03 -0.36 11.96 66.89 0.80 0.44 16 4 O -0.18 -2.84 10.52 4.59 0.05 -2.79 16 5 C 0.04 0.75 7.37 25.26 0.19 0.93 16 6 C -0.08 -1.04 10.24 71.24 0.73 -0.31 16 7 C -0.26 -5.14 6.07 -18.99 -0.12 -5.26 16 8 C 0.60 13.84 7.25 86.65 0.63 14.47 16 9 O -0.58 -18.23 16.73 -4.07 -0.07 -18.30 16 10 N -0.69 -12.06 5.26 -443.34 -2.33 -14.40 16 11 C 0.12 2.38 4.30 45.52 0.20 2.57 16 12 H 0.09 2.09 7.50 -2.39 -0.02 2.07 16 13 C -0.13 -2.23 7.39 31.12 0.23 -2.00 16 14 C 0.06 1.26 4.03 45.44 0.18 1.44 16 15 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 16 N -0.67 -19.89 6.18 -492.85 -3.05 -22.94 16 17 C 0.07 2.15 6.01 85.56 0.51 2.67 16 18 C 0.44 20.54 7.82 87.66 0.69 21.22 16 19 O -0.62 -34.40 15.78 -3.05 -0.05 -34.44 16 20 N -0.57 -29.22 5.29 -306.99 -1.62 -30.85 16 21 C -0.33 -18.91 9.68 84.04 0.81 -18.10 16 22 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 23 C -0.01 -0.73 5.50 84.92 0.47 -0.26 16 24 N -0.92 -49.33 13.05 21.66 0.28 -49.04 16 25 Si 0.99 42.81 29.55 68.60 2.03 44.84 16 26 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 28 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 29 C -0.14 -2.97 7.68 31.12 0.24 -2.73 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.25 0.71 8.06 -2.91 -0.02 0.68 16 34 H 0.11 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.10 0.93 8.14 -2.38 -0.02 0.91 16 36 H 0.08 1.21 7.93 -2.38 -0.02 1.19 16 37 H 0.41 5.34 8.69 -92.71 -0.81 4.53 16 38 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 40 H 0.35 10.70 8.25 -89.69 -0.74 9.96 16 41 H 0.07 1.95 8.13 -2.39 -0.02 1.93 16 42 H 0.10 3.02 8.14 -2.39 -0.02 3.01 16 43 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 44 H 0.28 13.92 8.31 -92.71 -0.77 13.15 16 45 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.09 2.18 8.14 -2.38 -0.02 2.17 16 Total: -1.00 -76.36 396.96 0.18 -76.18 By element: Atomic # 1 Polarization: 40.94 SS G_CDS: -1.24 Total: 39.70 kcal Atomic # 6 Polarization: 5.86 SS G_CDS: 6.18 Total: 12.04 kcal Atomic # 7 Polarization: -110.50 SS G_CDS: -6.72 Total: -117.23 kcal Atomic # 8 Polarization: -55.46 SS G_CDS: -0.07 Total: -55.53 kcal Atomic # 14 Polarization: 42.81 SS G_CDS: 2.03 Total: 44.84 kcal Total: -76.36 0.18 -76.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266588823.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.771 kcal (2) G-P(sol) polarization free energy of solvation -76.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds