Wall clock time and date at job start Tue Mar 31 2020 19:09:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35131 * 126.44501 * 2 1 4 4 O 1.33935 * 108.76991 * 179.77545 * 3 2 1 5 5 C 1.34913 * 109.37916 * 0.37790 * 4 3 2 6 6 C 1.46663 * 125.98536 * 179.88738 * 5 4 3 7 7 O 1.21696 * 120.00030 * 179.68968 * 6 5 4 8 8 N 1.34775 * 119.99830 * 359.69513 * 6 5 4 9 9 C 1.46502 * 119.99835 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46991 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.27298 * 307.09066 * 10 9 8 12 12 C 1.54591 * 110.30739 * 69.28447 * 10 9 8 13 13 C 1.54935 * 102.92137 * 140.87223 * 12 10 9 14 14 N 1.48540 * 103.22769 * 322.58331 * 13 12 10 15 15 C 1.46904 * 110.99947 * 159.72020 * 14 13 12 16 16 C 1.50697 * 109.46892 * 52.60416 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46887 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47066 * 120.00183 * 23 21 19 26 26 H 1.48499 * 109.47339 * 240.00683 * 23 21 19 27 27 C 1.47900 * 105.81665 * 39.21034 * 14 13 12 28 28 C 1.36548 * 108.03106 * 359.62635 * 5 4 3 29 29 H 1.09003 * 109.46804 * 270.00080 * 1 2 3 30 30 H 1.09009 * 109.47148 * 29.99205 * 1 2 3 31 31 H 1.08992 * 109.47482 * 149.99427 * 1 2 3 32 32 H 1.07997 * 125.61584 * 0.02590 * 3 2 1 33 33 H 0.96999 * 120.00371 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47080 * 59.99935 * 9 8 6 35 35 H 1.08998 * 109.46964 * 299.99786 * 9 8 6 36 36 H 1.08993 * 110.72626 * 259.22928 * 12 10 9 37 37 H 1.09006 * 110.72744 * 22.51879 * 12 10 9 38 38 H 1.09005 * 110.66793 * 204.15512 * 13 12 10 39 39 H 1.08997 * 110.67329 * 81.02270 * 13 12 10 40 40 H 1.09001 * 109.46900 * 292.61076 * 15 14 13 41 41 H 1.08993 * 109.47169 * 172.60797 * 15 14 13 42 42 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 43 43 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.92197 * 94.02129 * 27 14 13 45 45 H 1.09005 * 109.91623 * 215.12120 * 27 14 13 46 46 H 1.07997 * 126.65127 * 180.26127 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0050 5 6 3.6260 -0.6681 -0.0002 6 6 4.8378 -1.4942 0.0005 7 8 4.7470 -2.7078 0.0012 8 7 6.0520 -0.9093 0.0004 9 6 7.2626 -1.7345 0.0016 10 6 8.4965 -0.8297 0.0007 11 1 8.4365 -0.1102 -0.8159 12 6 8.6257 -0.0972 1.3558 13 6 10.1528 -0.1182 1.6168 14 7 10.5663 -1.4509 1.1075 15 6 12.0072 -1.4820 0.8233 16 6 12.7686 -1.0119 2.0359 17 8 12.1697 -0.6785 3.0366 18 7 14.1150 -0.9571 2.0067 19 6 14.8074 -0.5241 3.1079 20 1 14.2740 -0.2265 3.9986 21 6 16.1955 -0.4681 3.0781 22 7 16.8445 -0.8297 1.9941 23 14 17.1389 0.1226 4.5782 24 1 16.1822 0.4689 5.6598 25 1 18.0472 -0.9546 5.0474 26 1 17.9374 1.3224 4.2201 27 6 9.7782 -1.6742 -0.1240 28 6 2.3407 -1.1293 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8898 -0.5139 32 1 1.9771 2.1145 0.0004 33 1 6.1245 0.0580 -0.0004 34 1 7.2737 -2.3645 -0.8878 35 1 7.2730 -2.3628 0.8922 36 1 8.2620 0.9272 1.2768 37 1 8.0932 -0.6374 2.1387 38 1 10.3621 -0.0321 2.6831 39 1 10.6492 0.6770 1.0608 40 1 12.2255 -0.8262 -0.0195 41 1 12.3073 -2.5008 0.5783 42 1 14.5940 -1.2240 1.2066 43 1 17.8134 -0.7909 1.9733 44 1 10.3507 -1.3538 -0.9944 45 1 9.5234 -2.7300 -0.2154 46 1 2.0265 -2.1625 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267300584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:34 Heat of formation + Delta-G solvation = -52.083135 kcal Electronic energy + Delta-G solvation = -27600.617663 eV Core-core repulsion = 23491.905435 eV Total energy + Delta-G solvation = -4108.712228 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.09547 -39.95589 -39.13323 -37.64817 -35.30860 -34.57257 -33.92233 -32.15580 -31.27016 -30.88457 -29.32147 -27.86976 -27.09861 -25.38510 -24.07786 -23.04687 -21.53583 -21.19817 -20.59857 -19.86549 -19.23958 -18.29161 -17.88400 -16.80554 -16.68916 -16.62976 -15.86251 -15.66880 -15.16955 -14.98596 -14.49233 -14.44950 -14.00234 -13.93567 -13.83730 -13.64778 -13.52109 -13.43577 -13.27150 -13.03536 -12.54952 -12.29042 -12.18067 -12.02791 -11.69430 -11.55242 -11.30982 -11.17332 -10.95948 -10.76841 -10.56807 -10.53232 -10.32948 -10.24009 -10.12957 -9.51492 -9.44357 -8.96422 -8.37205 -8.02309 -7.90186 -6.43528 -3.84374 0.69180 1.89140 2.30138 2.86848 2.89842 3.15113 3.25992 3.33046 3.87913 4.07635 4.24273 4.29451 4.33617 4.49221 4.52636 4.60728 4.79220 4.89966 5.07733 5.15365 5.20207 5.23345 5.27493 5.36115 5.39694 5.49082 5.49871 5.53426 5.60870 5.64083 5.77641 5.86276 5.89337 5.97303 5.98451 6.02282 6.11714 6.25767 6.32503 6.43142 6.68473 7.14093 7.23819 7.30235 7.53937 7.76796 8.04543 8.59777 9.16302 9.52032 10.03643 10.74209 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.001647 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.586383 B =16995.096551 C =17436.619368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.009 4.009 4 O -0.162 6.162 5 C -0.075 4.075 6 C 0.601 3.399 7 O -0.520 6.520 8 N -0.716 5.716 9 C 0.129 3.871 10 C -0.111 4.111 11 H 0.080 0.920 12 C -0.123 4.123 13 C 0.038 3.962 14 N -0.495 5.495 15 C 0.036 3.964 16 C 0.442 3.558 17 O -0.581 6.581 18 N -0.562 5.562 19 C -0.299 4.299 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.281 1.281 26 H -0.282 1.282 27 C 0.041 3.959 28 C -0.118 4.118 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.209 0.791 33 H 0.406 0.594 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.119 0.881 39 H 0.035 0.965 40 H 0.049 0.951 41 H 0.090 0.910 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.047 0.953 45 H 0.081 0.919 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.414 3.747 -9.312 29.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.079 4.079 4 O -0.058 6.058 5 C -0.127 4.127 6 C 0.387 3.613 7 O -0.398 6.398 8 N -0.366 5.366 9 C 0.006 3.994 10 C -0.130 4.130 11 H 0.098 0.902 12 C -0.162 4.162 13 C -0.089 4.089 14 N -0.219 5.219 15 C -0.096 4.096 16 C 0.228 3.772 17 O -0.466 6.466 18 N -0.198 5.198 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.542 5.542 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.207 1.207 26 H -0.208 1.208 27 C -0.087 4.087 28 C -0.139 4.139 29 H 0.088 0.912 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.226 0.774 33 H 0.240 0.760 34 H 0.090 0.910 35 H 0.098 0.902 36 H 0.086 0.914 37 H 0.095 0.905 38 H 0.137 0.863 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.108 0.892 42 H 0.226 0.774 43 H 0.081 0.919 44 H 0.065 0.935 45 H 0.099 0.901 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -27.434 2.844 -8.287 28.799 hybrid contribution 1.024 1.182 -0.565 1.663 sum -26.410 4.025 -8.852 28.143 Atomic orbital electron populations 1.20192 0.88548 1.02915 1.02446 1.20511 0.97794 0.92395 1.08865 1.24222 0.79883 1.00101 1.03715 1.84061 1.29403 1.21670 1.70619 1.22085 0.96203 0.80569 1.13862 1.16534 0.81271 0.86370 0.77121 1.90903 1.85990 1.12239 1.50630 1.45919 1.05442 1.11027 1.74220 1.21597 0.81597 0.93068 1.03120 1.22263 0.93985 0.97524 0.99277 0.90183 1.22702 0.97984 0.99646 0.95832 1.23480 0.92181 0.88815 1.04418 1.64625 1.03085 1.30087 1.24138 1.22102 0.88725 1.01922 0.96805 1.19717 0.83039 0.84996 0.89487 1.90436 1.67778 1.53959 1.34378 1.41862 1.04387 1.57660 1.15906 1.19759 0.88873 1.40102 0.94130 0.87818 1.25267 0.96764 0.97528 0.98359 1.69619 1.08933 1.48069 1.27605 0.85799 0.79301 0.78188 0.81049 1.19214 1.20725 1.20787 1.22886 0.92958 1.00400 0.92499 1.21867 0.90554 1.00645 1.00822 0.91166 0.91404 0.91224 0.77401 0.75957 0.90990 0.90185 0.91449 0.90537 0.86335 0.94645 0.93352 0.89180 0.77448 0.91903 0.93516 0.90053 0.82244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.39 36.00 0.37 0.00 16 2 C -0.19 -1.38 6.14 -104.93 -0.64 -2.03 16 3 C -0.01 -0.06 12.00 29.63 0.36 0.30 16 4 O -0.16 -1.40 10.40 4.99 0.05 -1.35 16 5 C -0.08 -0.77 7.13 -36.79 -0.26 -1.03 16 6 C 0.60 7.04 7.79 -12.86 -0.10 6.94 16 7 O -0.52 -7.72 16.86 5.19 0.09 -7.63 16 8 N -0.72 -6.95 5.42 -61.62 -0.33 -7.29 16 9 C 0.13 1.33 4.77 -4.04 -0.02 1.31 16 10 C -0.11 -1.15 3.03 -89.26 -0.27 -1.42 16 11 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 12 C -0.12 -1.48 6.41 -24.87 -0.16 -1.64 16 13 C 0.04 0.62 5.30 -1.90 -0.01 0.61 16 14 N -0.50 -8.18 5.26 -231.89 -1.22 -9.40 16 15 C 0.04 0.65 5.52 -4.98 -0.03 0.62 16 16 C 0.44 10.32 7.50 -10.98 -0.08 10.24 16 17 O -0.58 -15.24 13.08 5.55 0.07 -15.17 16 18 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.01 7.16 -52.48 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.40 13.05 55.50 0.72 -23.68 16 23 Si 0.93 20.94 29.55 -169.99 -5.02 15.92 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 C 0.04 0.51 6.35 -2.75 -0.02 0.49 16 28 C -0.12 -1.09 10.57 -39.39 -0.42 -1.51 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.20 8.14 -51.92 -0.42 -0.22 16 31 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.21 0.48 8.06 -52.49 -0.42 0.06 16 33 H 0.41 3.20 8.16 -40.82 -0.33 2.87 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.95 8.00 -51.93 -0.42 0.54 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.97 7.76 -51.93 -0.40 0.57 16 38 H 0.12 2.36 5.97 -51.93 -0.31 2.05 16 39 H 0.04 0.59 8.02 -51.93 -0.42 0.17 16 40 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.05 0.54 7.57 -51.93 -0.39 0.14 16 45 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 46 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 385.76 15.07 5.81 5.81 Total: -1.00 -33.16 385.76 -8.12 -41.28 By element: Atomic # 1 Polarization: 17.46 SS G_CDS: -6.71 Total: 10.75 kcal Atomic # 6 Polarization: 6.48 SS G_CDS: -1.52 Total: 4.96 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.89 Total: -54.58 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: 0.21 Total: -24.15 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.16 -8.12 -41.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267300584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.802 kcal (2) G-P(sol) polarization free energy of solvation -33.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds