Wall clock time and date at job start Tue Mar 31 2020 19:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35131 * 126.44501 * 2 1 4 4 O 1.33935 * 108.76991 * 179.77545 * 3 2 1 5 5 C 1.34913 * 109.37916 * 0.37790 * 4 3 2 6 6 C 1.46663 * 125.98536 * 179.88738 * 5 4 3 7 7 O 1.21696 * 120.00030 * 179.68968 * 6 5 4 8 8 N 1.34775 * 119.99830 * 359.69513 * 6 5 4 9 9 C 1.46502 * 119.99835 * 179.97438 * 8 6 5 10 10 C 1.53004 * 109.46991 * 179.97438 * 9 8 6 11 11 H 1.08999 * 110.27298 * 307.09066 * 10 9 8 12 12 C 1.54591 * 110.30739 * 69.28447 * 10 9 8 13 13 C 1.54935 * 102.92137 * 140.87223 * 12 10 9 14 14 N 1.48540 * 103.22769 * 322.58331 * 13 12 10 15 15 C 1.46904 * 110.99947 * 159.72020 * 14 13 12 16 16 C 1.50697 * 109.46892 * 52.60416 * 15 14 13 17 17 O 1.21291 * 120.00763 * 359.72740 * 16 15 14 18 18 N 1.34784 * 119.99774 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99968 * 179.72830 * 18 16 15 20 20 H 1.08005 * 120.00127 * 359.97438 * 19 18 16 21 21 C 1.38955 * 120.00107 * 179.97438 * 19 18 16 22 22 N 1.31413 * 119.99828 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00407 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46887 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.47066 * 120.00183 * 23 21 19 26 26 H 1.48499 * 109.47339 * 240.00683 * 23 21 19 27 27 C 1.47900 * 105.81665 * 39.21034 * 14 13 12 28 28 C 1.36548 * 108.03106 * 359.62635 * 5 4 3 29 29 H 1.09003 * 109.46804 * 270.00080 * 1 2 3 30 30 H 1.09009 * 109.47148 * 29.99205 * 1 2 3 31 31 H 1.08992 * 109.47482 * 149.99427 * 1 2 3 32 32 H 1.07997 * 125.61584 * 0.02590 * 3 2 1 33 33 H 0.96999 * 120.00371 * 359.97438 * 8 6 5 34 34 H 1.09001 * 109.47080 * 59.99935 * 9 8 6 35 35 H 1.08998 * 109.46964 * 299.99786 * 9 8 6 36 36 H 1.08993 * 110.72626 * 259.22928 * 12 10 9 37 37 H 1.09006 * 110.72744 * 22.51879 * 12 10 9 38 38 H 1.09005 * 110.66793 * 204.15512 * 13 12 10 39 39 H 1.08997 * 110.67329 * 81.02270 * 13 12 10 40 40 H 1.09001 * 109.46900 * 292.61076 * 15 14 13 41 41 H 1.08993 * 109.47169 * 172.60797 * 15 14 13 42 42 H 0.97005 * 119.99846 * 359.72750 * 18 16 15 43 43 H 0.96990 * 120.00373 * 180.02562 * 22 21 19 44 44 H 1.08991 * 109.92197 * 94.02129 * 27 14 13 45 45 H 1.09005 * 109.91623 * 215.12120 * 27 14 13 46 46 H 1.07997 * 126.65127 * 180.26127 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0050 5 6 3.6260 -0.6681 -0.0002 6 6 4.8378 -1.4942 0.0005 7 8 4.7470 -2.7078 0.0012 8 7 6.0520 -0.9093 0.0004 9 6 7.2626 -1.7345 0.0016 10 6 8.4965 -0.8297 0.0007 11 1 8.4365 -0.1102 -0.8159 12 6 8.6257 -0.0972 1.3558 13 6 10.1528 -0.1182 1.6168 14 7 10.5663 -1.4509 1.1075 15 6 12.0072 -1.4820 0.8233 16 6 12.7686 -1.0119 2.0359 17 8 12.1697 -0.6785 3.0366 18 7 14.1150 -0.9571 2.0067 19 6 14.8074 -0.5241 3.1079 20 1 14.2740 -0.2265 3.9986 21 6 16.1955 -0.4681 3.0781 22 7 16.8445 -0.8297 1.9941 23 14 17.1389 0.1226 4.5782 24 1 16.1822 0.4689 5.6598 25 1 18.0472 -0.9546 5.0474 26 1 17.9374 1.3224 4.2201 27 6 9.7782 -1.6742 -0.1240 28 6 2.3407 -1.1293 -0.0001 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8901 -0.5137 31 1 -0.3634 -0.8898 -0.5139 32 1 1.9771 2.1145 0.0004 33 1 6.1245 0.0580 -0.0004 34 1 7.2737 -2.3645 -0.8878 35 1 7.2730 -2.3628 0.8922 36 1 8.2620 0.9272 1.2768 37 1 8.0932 -0.6374 2.1387 38 1 10.3621 -0.0321 2.6831 39 1 10.6492 0.6770 1.0608 40 1 12.2255 -0.8262 -0.0195 41 1 12.3073 -2.5008 0.5783 42 1 14.5940 -1.2240 1.2066 43 1 17.8134 -0.7909 1.9733 44 1 10.3507 -1.3538 -0.9944 45 1 9.5234 -2.7300 -0.2154 46 1 2.0265 -2.1625 0.0004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267300584.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:33 Heat of formation + Delta-G solvation = -77.495335 kcal Electronic energy + Delta-G solvation = -27601.719619 eV Core-core repulsion = 23491.905435 eV Total energy + Delta-G solvation = -4109.814184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.70015 -41.00294 -40.44286 -39.17274 -36.37362 -35.84042 -35.12894 -33.46311 -33.07701 -31.62675 -30.36266 -28.75810 -28.12568 -26.68707 -25.58031 -23.84699 -22.48264 -22.15840 -21.48288 -21.05169 -20.65884 -19.87110 -18.97224 -17.88607 -17.46773 -17.36596 -17.29031 -16.77457 -16.54244 -16.23386 -16.03031 -15.74189 -15.58484 -15.08940 -14.68635 -14.51320 -14.41811 -14.13794 -14.09066 -13.94955 -13.57783 -13.52356 -13.48457 -13.23821 -12.93674 -12.85928 -12.56291 -12.40999 -12.38305 -12.18982 -12.12747 -11.87443 -11.59954 -11.49409 -11.43636 -10.74951 -10.30471 -10.14967 -10.00490 -9.54982 -9.28346 -8.47439 -5.95960 -0.00256 1.33092 1.35859 1.41386 1.55406 1.63270 2.03565 2.05611 2.16984 2.28551 2.89409 3.19641 3.34618 3.53935 3.68430 3.73272 3.81321 3.85294 4.05714 4.28242 4.32566 4.34854 4.39979 4.41032 4.50351 4.60263 4.64314 4.69202 4.75307 4.87988 4.88352 4.93151 4.93845 5.03218 5.07195 5.09158 5.19880 5.31459 5.31827 5.41596 5.50403 5.82023 5.88363 5.99990 6.14614 6.38094 6.60166 6.95284 7.12525 7.54977 8.11045 8.70238 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.034620 B = 0.001647 C = 0.001605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.586383 B =16995.096551 C =17436.619368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.208 4.208 3 C 0.006 3.994 4 O -0.166 6.166 5 C -0.103 4.103 6 C 0.599 3.401 7 O -0.562 6.562 8 N -0.704 5.704 9 C 0.135 3.865 10 C -0.095 4.095 11 H 0.107 0.893 12 C -0.112 4.112 13 C 0.037 3.963 14 N -0.517 5.517 15 C 0.048 3.952 16 C 0.438 3.562 17 O -0.614 6.614 18 N -0.573 5.573 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.270 1.270 27 C 0.040 3.960 28 C -0.126 4.126 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.068 0.932 32 H 0.252 0.748 33 H 0.416 0.584 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.066 0.934 38 H 0.074 0.926 39 H 0.031 0.969 40 H 0.071 0.929 41 H 0.108 0.892 42 H 0.396 0.604 43 H 0.277 0.723 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.681 5.184 -10.670 31.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.209 4.209 3 C -0.063 4.063 4 O -0.062 6.062 5 C -0.155 4.155 6 C 0.387 3.613 7 O -0.443 6.443 8 N -0.354 5.354 9 C 0.012 3.988 10 C -0.114 4.114 11 H 0.125 0.875 12 C -0.151 4.151 13 C -0.090 4.090 14 N -0.242 5.242 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.500 6.500 18 N -0.210 5.210 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.817 3.183 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.195 1.195 27 C -0.088 4.088 28 C -0.147 4.147 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.268 0.732 33 H 0.253 0.747 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.110 0.890 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.126 0.874 42 H 0.230 0.770 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.108 0.892 46 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -28.697 4.298 -9.672 30.586 hybrid contribution 1.306 0.768 -0.138 1.522 sum -27.391 5.066 -9.810 29.532 Atomic orbital electron populations 1.20260 0.86692 1.03899 1.03092 1.20848 0.99147 0.91762 1.09132 1.25114 0.78745 1.01680 1.00777 1.84051 1.30703 1.20676 1.70730 1.21785 0.95739 0.81367 1.16563 1.16737 0.82086 0.86070 0.76422 1.90869 1.86679 1.13974 1.52804 1.45803 1.04784 1.11519 1.73333 1.21473 0.81769 0.93012 1.02534 1.22162 0.92909 0.97375 0.98953 0.87473 1.22612 0.94546 1.01320 0.96580 1.23288 0.95256 0.88814 1.01647 1.64580 1.02519 1.30215 1.26866 1.21990 0.89083 1.03002 0.94271 1.20754 0.82620 0.83297 0.90752 1.90440 1.68381 1.54874 1.36355 1.41930 1.05150 1.58391 1.15515 1.19701 0.89771 1.42207 0.94526 0.90294 1.26030 0.96968 0.97090 1.01123 1.69675 1.09485 1.48094 1.28869 0.84870 0.77783 0.78180 0.77492 1.19837 1.19692 1.19542 1.22984 0.93264 1.01455 0.91119 1.22102 0.91011 1.01367 1.00211 0.90631 0.89398 0.91332 0.73238 0.74679 0.90395 0.92086 0.88992 0.91566 0.90764 0.95080 0.91124 0.87444 0.77033 0.91309 0.91733 0.89208 0.82696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.39 71.23 0.74 0.19 16 2 C -0.21 -2.56 6.14 -20.06 -0.12 -2.69 16 3 C 0.01 0.06 12.00 67.10 0.81 0.86 16 4 O -0.17 -2.55 10.40 -5.07 -0.05 -2.60 16 5 C -0.10 -2.04 7.13 24.08 0.17 -1.87 16 6 C 0.60 14.00 7.79 86.44 0.67 14.68 16 7 O -0.56 -17.16 16.86 -4.34 -0.07 -17.24 16 8 N -0.70 -12.86 5.42 -467.09 -2.53 -15.39 16 9 C 0.14 2.61 4.77 86.38 0.41 3.02 16 10 C -0.09 -1.73 3.03 -9.91 -0.03 -1.76 16 11 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 12 C -0.11 -2.56 6.41 31.80 0.20 -2.36 16 13 C 0.04 1.23 5.30 86.65 0.46 1.69 16 14 N -0.52 -16.75 5.26 -887.56 -4.67 -21.42 16 15 C 0.05 1.67 5.52 85.56 0.47 2.15 16 16 C 0.44 20.93 7.50 87.65 0.66 21.59 16 17 O -0.61 -33.62 13.08 -3.06 -0.04 -33.66 16 18 N -0.57 -29.51 5.29 -306.97 -1.62 -31.14 16 19 C -0.33 -18.94 9.68 84.04 0.81 -18.12 16 20 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 21 C -0.01 -0.66 5.50 84.93 0.47 -0.20 16 22 N -0.92 -49.71 13.05 21.66 0.28 -49.42 16 23 Si 0.99 43.05 29.55 68.60 2.03 45.08 16 24 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 26 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 27 C 0.04 0.89 6.35 86.45 0.55 1.44 16 28 C -0.13 -2.29 10.57 22.39 0.24 -2.06 16 29 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.09 0.23 8.14 -2.38 -0.02 0.22 16 31 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.25 0.02 8.06 -2.91 -0.02 0.00 16 33 H 0.42 5.73 8.16 -92.71 -0.76 4.98 16 34 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 35 H 0.06 1.44 8.00 -2.39 -0.02 1.42 16 36 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.07 1.66 7.76 -2.38 -0.02 1.64 16 38 H 0.07 3.11 5.97 -2.38 -0.01 3.10 16 39 H 0.03 1.02 8.02 -2.39 -0.02 1.00 16 40 H 0.07 2.17 7.81 -2.39 -0.02 2.15 16 41 H 0.11 3.39 8.14 -2.39 -0.02 3.37 16 42 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 43 H 0.28 13.99 8.31 -92.72 -0.77 13.22 16 44 H 0.06 1.26 7.57 -2.39 -0.02 1.24 16 45 H 0.09 1.89 7.69 -2.38 -0.02 1.87 16 46 H 0.16 2.81 8.06 -2.91 -0.02 2.79 16 Total: -1.00 -75.15 385.76 -0.64 -75.79 By element: Atomic # 1 Polarization: 33.91 SS G_CDS: -0.47 Total: 33.44 kcal Atomic # 6 Polarization: 10.05 SS G_CDS: 6.51 Total: 16.56 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -8.54 Total: -117.37 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.17 Total: -53.50 kcal Atomic # 14 Polarization: 43.05 SS G_CDS: 2.03 Total: 45.08 kcal Total: -75.15 -0.64 -75.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267300584.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.706 kcal (2) G-P(sol) polarization free energy of solvation -75.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.790 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds