Wall clock time and date at job start Tue Mar 31 2020 19:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35132 * 125.61475 * 2 1 4 4 C 1.40364 * 107.11651 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.64720 * 179.97438 * 4 3 2 6 6 C 1.36554 * 106.70355 * 359.97438 * 4 3 2 7 7 C 1.46651 * 125.98356 * 180.02562 * 6 4 3 8 8 O 1.21703 * 120.00169 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99951 * 180.27449 * 7 6 4 10 10 C 1.46505 * 120.00095 * 179.72488 * 9 7 6 11 11 H 1.08994 * 110.27226 * 32.91285 * 10 9 7 12 12 C 1.54601 * 110.30674 * 270.71603 * 10 9 7 13 13 C 1.54936 * 102.92142 * 219.12689 * 12 10 9 14 14 N 1.48533 * 103.22832 * 37.41387 * 13 12 10 15 15 C 1.46898 * 111.00472 * 200.27856 * 14 13 12 16 16 C 1.50709 * 109.47060 * 287.40144 * 15 14 13 17 17 O 1.21285 * 119.99685 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99742 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99650 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99663 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00470 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00072 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46848 * 59.99737 * 23 21 19 25 25 H 1.48494 * 109.47524 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47043 * 300.00233 * 23 21 19 27 27 C 1.47901 * 105.82109 * 320.79436 * 14 13 12 28 28 O 1.33929 * 125.61775 * 180.32715 * 2 1 3 29 29 H 1.09004 * 109.46775 * 90.00195 * 1 2 3 30 30 H 1.09001 * 109.46945 * 210.00141 * 1 2 3 31 31 H 1.08998 * 109.47671 * 330.00157 * 1 2 3 32 32 H 1.08006 * 126.44301 * 0.03994 * 3 2 1 33 33 H 1.09001 * 109.47174 * 270.02151 * 5 4 3 34 34 H 1.08993 * 109.47352 * 30.02241 * 5 4 3 35 35 H 1.08999 * 109.47157 * 150.02611 * 5 4 3 36 36 H 0.97000 * 120.00112 * 359.72923 * 9 7 6 37 37 H 1.09003 * 110.72694 * 337.48743 * 12 10 9 38 38 H 1.09007 * 110.72054 * 100.77084 * 12 10 9 39 39 H 1.09010 * 110.66805 * 278.98380 * 13 12 10 40 40 H 1.09000 * 110.66842 * 155.85473 * 13 12 10 41 41 H 1.09002 * 109.46952 * 47.39655 * 15 14 13 42 42 H 1.08995 * 109.47163 * 167.40078 * 15 14 13 43 43 H 0.97000 * 120.00356 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00346 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.91668 * 265.97559 * 27 14 13 46 46 H 1.09003 * 109.91828 * 144.67674 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8616 1.5144 -0.0014 6 6 3.5823 -0.7117 -0.0004 7 6 4.7414 -1.6100 -0.0003 8 8 5.8680 -1.1498 0.0001 9 7 4.5590 -2.9454 -0.0056 10 6 5.7169 -3.8429 -0.0116 11 1 6.5423 -3.3982 0.5443 12 6 6.1494 -4.1511 -1.4636 13 6 6.5285 -5.6520 -1.4009 14 7 5.5193 -6.2190 -0.4702 15 6 5.9792 -7.4964 0.0906 16 6 5.9171 -8.5631 -0.9722 17 8 5.5276 -8.2863 -2.0870 18 7 6.2944 -9.8244 -0.6839 19 6 6.2374 -10.7949 -1.6507 20 1 5.8898 -10.5487 -2.6431 21 6 6.6269 -12.0951 -1.3536 22 7 7.0495 -12.3948 -0.1458 23 14 6.5486 -13.4176 -2.6705 24 1 7.4200 -13.0335 -3.8101 25 1 7.0144 -14.7087 -2.1038 26 1 5.1487 -13.5619 -3.1445 27 6 5.3386 -5.2075 0.5936 28 8 2.2870 -1.0887 -0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.9612 2.1261 0.0006 33 1 5.1591 1.7222 -1.0292 34 1 4.6516 2.4523 0.5127 35 1 5.6688 0.9916 0.5117 36 1 3.6610 -3.3122 -0.0055 37 1 5.3219 -3.9907 -2.1548 38 1 7.0117 -3.5468 -1.7456 39 1 7.5346 -5.7783 -1.0008 40 1 6.4446 -6.1114 -2.3858 41 1 7.0063 -7.3910 0.4400 42 1 5.3383 -7.7782 0.9260 43 1 6.6063 -10.0456 0.2076 44 1 7.3210 -13.3026 0.0617 45 1 5.9920 -5.4339 1.4361 46 1 4.2987 -5.1934 0.9199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267739549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:40 Heat of formation + Delta-G solvation = -51.950144 kcal Electronic energy + Delta-G solvation = -28068.099231 eV Core-core repulsion = 23959.392769 eV Total energy + Delta-G solvation = -4108.706461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.04399 -40.06567 -38.78317 -37.49705 -34.89989 -34.14834 -33.76811 -32.82776 -31.38437 -30.88694 -28.78680 -28.28753 -27.43435 -26.22621 -24.18723 -22.34673 -21.76632 -21.24259 -20.66247 -19.93102 -19.20221 -18.38588 -17.84923 -16.84460 -16.62030 -15.94380 -15.80561 -15.34183 -14.88732 -14.68311 -14.51560 -14.38486 -14.07409 -13.78695 -13.76153 -13.52443 -13.41447 -13.26477 -13.08070 -12.95245 -12.69651 -12.56748 -12.33611 -12.01721 -11.93015 -11.74043 -11.52735 -11.46104 -11.10855 -10.89551 -10.75263 -10.43225 -10.29822 -10.20069 -9.96559 -9.47579 -9.33713 -8.71417 -8.48237 -8.00998 -7.93120 -6.40118 -3.80925 0.75369 1.97789 2.30863 2.93081 2.96696 3.21052 3.26570 3.30973 3.92173 4.01593 4.19039 4.26262 4.44771 4.45987 4.58782 4.77922 4.88158 4.97744 5.00595 5.06204 5.17357 5.19882 5.26775 5.30525 5.35765 5.39575 5.45460 5.50503 5.64637 5.67017 5.77643 5.78675 5.81359 5.87495 5.95672 6.10287 6.16108 6.28692 6.33650 6.40924 6.58105 7.09987 7.16493 7.28581 7.56368 7.87811 8.07571 8.63661 9.19776 9.56209 10.08352 10.77618 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025393 B = 0.001886 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.418395 B =14844.705751 C =15394.821961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.024 3.976 3 C -0.225 4.225 4 C -0.083 4.083 5 C -0.095 4.095 6 C -0.089 4.089 7 C 0.605 3.395 8 O -0.521 6.521 9 N -0.708 5.708 10 C 0.136 3.864 11 H 0.098 0.902 12 C -0.132 4.132 13 C 0.041 3.959 14 N -0.490 5.490 15 C 0.036 3.964 16 C 0.445 3.555 17 O -0.577 6.577 18 N -0.566 5.566 19 C -0.298 4.298 20 H 0.102 0.898 21 C 0.021 3.979 22 N -0.903 5.903 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.027 3.973 28 O -0.161 6.161 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.155 0.845 33 H 0.074 0.926 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.407 0.593 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.042 0.958 40 H 0.101 0.899 41 H 0.052 0.948 42 H 0.089 0.911 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.056 0.944 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.794 25.923 5.159 27.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.029 4.029 3 C -0.245 4.245 4 C -0.086 4.086 5 C -0.151 4.151 6 C -0.140 4.140 7 C 0.392 3.608 8 O -0.399 6.399 9 N -0.359 5.359 10 C 0.031 3.969 11 H 0.116 0.884 12 C -0.171 4.171 13 C -0.086 4.086 14 N -0.214 5.214 15 C -0.096 4.096 16 C 0.231 3.769 17 O -0.460 6.460 18 N -0.203 5.203 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.101 4.101 28 O -0.058 6.058 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.111 0.889 32 H 0.172 0.828 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.106 0.894 36 H 0.243 0.757 37 H 0.098 0.902 38 H 0.095 0.905 39 H 0.061 0.939 40 H 0.120 0.880 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.225 0.775 44 H 0.081 0.919 45 H 0.074 0.926 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.750 25.782 4.228 27.552 hybrid contribution 0.427 -0.834 0.465 1.046 sum -8.322 24.947 4.693 26.714 Atomic orbital electron populations 1.20433 0.84488 1.04562 1.04098 1.22790 0.94291 0.84069 1.01735 1.21473 0.91861 0.99800 1.11317 1.20622 0.96377 0.92194 0.99365 1.20430 0.93873 0.97890 1.02953 1.21806 0.81913 0.94115 1.16192 1.16510 0.86024 0.81549 0.76737 1.90845 1.22045 1.75953 1.51041 1.46030 1.10633 1.05153 1.74057 1.21929 0.88174 0.89176 0.97607 0.88352 1.22947 1.02011 0.96316 0.95865 1.23287 0.92843 0.92877 0.99637 1.64500 1.43123 1.00976 1.12841 1.22082 0.99326 0.90596 0.97581 1.19681 0.84489 0.83463 0.89306 1.90507 1.51097 1.81290 1.23138 1.41853 1.57636 1.06956 1.13823 1.19639 1.41103 0.87825 0.94201 0.87995 1.25254 0.97072 0.98391 0.97280 1.69603 1.44222 1.21143 1.19463 0.85920 0.78833 0.79256 0.80215 1.19937 1.21011 1.19917 1.23160 1.02258 0.90314 0.94404 1.84006 1.15867 1.34762 1.71116 0.89460 0.90002 0.88937 0.82754 0.90752 0.91517 0.89430 0.75678 0.90215 0.90545 0.93936 0.88042 0.93021 0.89313 0.77525 0.91860 0.92560 0.89776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.34 10.41 36.01 0.37 0.03 16 2 C 0.02 0.20 7.31 -35.41 -0.26 -0.06 16 3 C -0.23 -1.90 10.73 -39.89 -0.43 -2.32 16 4 C -0.08 -0.87 6.20 -104.43 -0.65 -1.51 16 5 C -0.10 -0.87 9.82 36.00 0.35 -0.51 16 6 C -0.09 -1.03 7.13 -36.80 -0.26 -1.29 16 7 C 0.61 7.63 7.78 -12.87 -0.10 7.53 16 8 O -0.52 -7.65 14.39 5.19 0.07 -7.58 16 9 N -0.71 -7.99 5.05 -53.80 -0.27 -8.26 16 10 C 0.14 1.63 3.34 -66.57 -0.22 1.40 16 11 H 0.10 1.19 7.56 -51.93 -0.39 0.80 16 12 C -0.13 -1.74 6.78 -24.87 -0.17 -1.91 16 13 C 0.04 0.65 5.93 -1.90 -0.01 0.64 16 14 N -0.49 -8.00 4.90 -231.89 -1.14 -9.14 16 15 C 0.04 0.63 5.19 -4.97 -0.03 0.61 16 16 C 0.45 10.49 7.61 -10.98 -0.08 10.41 16 17 O -0.58 -15.55 14.64 5.55 0.08 -15.47 16 18 N -0.57 -14.33 5.29 -10.96 -0.06 -14.38 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 20 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.59 13.05 55.50 0.72 -23.87 16 23 Si 0.93 21.12 29.55 -169.99 -5.02 16.10 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 27 C 0.03 0.34 6.43 -2.75 -0.02 0.32 16 28 O -0.16 -1.69 10.40 5.02 0.05 -1.64 16 29 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 32 H 0.15 0.90 8.06 -52.48 -0.42 0.47 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 35 H 0.09 0.94 6.44 -51.93 -0.33 0.60 16 36 H 0.41 4.10 8.11 -40.82 -0.33 3.77 16 37 H 0.08 1.10 8.06 -51.93 -0.42 0.68 16 38 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.04 0.64 7.81 -51.92 -0.41 0.23 16 40 H 0.10 1.89 7.10 -51.93 -0.37 1.53 16 41 H 0.05 0.83 7.83 -51.93 -0.41 0.42 16 42 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 43 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.06 0.63 7.77 -51.93 -0.40 0.23 16 46 H 0.08 0.96 7.65 -51.93 -0.40 0.56 16 LS Contribution 385.13 15.07 5.80 5.80 Total: -1.00 -33.31 385.13 -8.16 -41.47 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -6.67 Total: 11.62 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: -1.74 Total: 5.34 kcal Atomic # 7 Polarization: -54.91 SS G_CDS: -0.74 Total: -55.65 kcal Atomic # 8 Polarization: -24.90 SS G_CDS: 0.21 Total: -24.69 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.31 -8.16 -41.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267739549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.475 kcal (2) G-P(sol) polarization free energy of solvation -33.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds