Wall clock time and date at job start Tue Mar 31 2020 19:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35132 * 125.61475 * 2 1 4 4 C 1.40364 * 107.11651 * 180.02562 * 3 2 1 5 5 C 1.50693 * 126.64720 * 179.97438 * 4 3 2 6 6 C 1.36554 * 106.70355 * 359.97438 * 4 3 2 7 7 C 1.46651 * 125.98356 * 180.02562 * 6 4 3 8 8 O 1.21703 * 120.00169 * 0.02562 * 7 6 4 9 9 N 1.34773 * 119.99951 * 180.27449 * 7 6 4 10 10 C 1.46505 * 120.00095 * 179.72488 * 9 7 6 11 11 H 1.08994 * 110.27226 * 32.91285 * 10 9 7 12 12 C 1.54601 * 110.30674 * 270.71603 * 10 9 7 13 13 C 1.54936 * 102.92142 * 219.12689 * 12 10 9 14 14 N 1.48533 * 103.22832 * 37.41387 * 13 12 10 15 15 C 1.46898 * 111.00472 * 200.27856 * 14 13 12 16 16 C 1.50709 * 109.47060 * 287.40144 * 15 14 13 17 17 O 1.21285 * 119.99685 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99742 * 179.97438 * 16 15 14 19 19 C 1.37103 * 119.99650 * 179.97438 * 18 16 15 20 20 H 1.07997 * 120.00010 * 359.97438 * 19 18 16 21 21 C 1.38943 * 119.99663 * 179.97438 * 19 18 16 22 22 N 1.31413 * 120.00470 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00072 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46848 * 59.99737 * 23 21 19 25 25 H 1.48494 * 109.47524 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47043 * 300.00233 * 23 21 19 27 27 C 1.47901 * 105.82109 * 320.79436 * 14 13 12 28 28 O 1.33929 * 125.61775 * 180.32715 * 2 1 3 29 29 H 1.09004 * 109.46775 * 90.00195 * 1 2 3 30 30 H 1.09001 * 109.46945 * 210.00141 * 1 2 3 31 31 H 1.08998 * 109.47671 * 330.00157 * 1 2 3 32 32 H 1.08006 * 126.44301 * 0.03994 * 3 2 1 33 33 H 1.09001 * 109.47174 * 270.02151 * 5 4 3 34 34 H 1.08993 * 109.47352 * 30.02241 * 5 4 3 35 35 H 1.08999 * 109.47157 * 150.02611 * 5 4 3 36 36 H 0.97000 * 120.00112 * 359.72923 * 9 7 6 37 37 H 1.09003 * 110.72694 * 337.48743 * 12 10 9 38 38 H 1.09007 * 110.72054 * 100.77084 * 12 10 9 39 39 H 1.09010 * 110.66805 * 278.98380 * 13 12 10 40 40 H 1.09000 * 110.66842 * 155.85473 * 13 12 10 41 41 H 1.09002 * 109.46952 * 47.39655 * 15 14 13 42 42 H 1.08995 * 109.47163 * 167.40078 * 15 14 13 43 43 H 0.97000 * 120.00356 * 359.97438 * 18 16 15 44 44 H 0.97001 * 120.00346 * 179.97438 * 22 21 19 45 45 H 1.08993 * 109.91668 * 265.97559 * 27 14 13 46 46 H 1.09003 * 109.91828 * 144.67674 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2939 1.0986 0.0000 4 6 3.6250 0.6532 -0.0006 5 6 4.8616 1.5144 -0.0014 6 6 3.5823 -0.7117 -0.0004 7 6 4.7414 -1.6100 -0.0003 8 8 5.8680 -1.1498 0.0001 9 7 4.5590 -2.9454 -0.0056 10 6 5.7169 -3.8429 -0.0116 11 1 6.5423 -3.3982 0.5443 12 6 6.1494 -4.1511 -1.4636 13 6 6.5285 -5.6520 -1.4009 14 7 5.5193 -6.2190 -0.4702 15 6 5.9792 -7.4964 0.0906 16 6 5.9171 -8.5631 -0.9722 17 8 5.5276 -8.2863 -2.0870 18 7 6.2944 -9.8244 -0.6839 19 6 6.2374 -10.7949 -1.6507 20 1 5.8898 -10.5487 -2.6431 21 6 6.6269 -12.0951 -1.3536 22 7 7.0495 -12.3948 -0.1458 23 14 6.5486 -13.4176 -2.6705 24 1 7.4200 -13.0335 -3.8101 25 1 7.0144 -14.7087 -2.1038 26 1 5.1487 -13.5619 -3.1445 27 6 5.3386 -5.2075 0.5936 28 8 2.2870 -1.0887 -0.0062 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5138 32 1 1.9612 2.1261 0.0006 33 1 5.1591 1.7222 -1.0292 34 1 4.6516 2.4523 0.5127 35 1 5.6688 0.9916 0.5117 36 1 3.6610 -3.3122 -0.0055 37 1 5.3219 -3.9907 -2.1548 38 1 7.0117 -3.5468 -1.7456 39 1 7.5346 -5.7783 -1.0008 40 1 6.4446 -6.1114 -2.3858 41 1 7.0063 -7.3910 0.4400 42 1 5.3383 -7.7782 0.9260 43 1 6.6063 -10.0456 0.2076 44 1 7.3210 -13.3026 0.0617 45 1 5.9920 -5.4339 1.4361 46 1 4.2987 -5.1934 0.9199 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267739549.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:39 Heat of formation + Delta-G solvation = -76.639579 kcal Electronic energy + Delta-G solvation = -28069.169845 eV Core-core repulsion = 23959.392769 eV Total energy + Delta-G solvation = -4109.777076 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.75333 -41.13251 -40.23924 -39.00406 -36.07458 -35.66207 -34.91484 -33.44194 -33.26600 -32.20866 -29.83331 -28.90178 -28.57018 -27.49683 -25.94123 -23.20754 -22.52206 -22.46047 -21.65633 -21.00384 -20.69830 -19.87909 -19.22333 -17.85186 -17.59401 -17.47179 -16.94682 -16.51617 -16.22919 -16.06381 -15.73785 -15.57388 -15.54242 -15.09557 -14.65823 -14.48737 -14.13189 -14.09829 -13.99574 -13.71919 -13.66001 -13.58464 -13.37395 -13.33995 -13.23814 -12.99802 -12.83219 -12.67838 -12.56884 -12.42201 -12.21980 -12.12090 -11.90371 -11.47046 -11.24762 -10.66272 -10.40756 -10.21016 -9.99490 -9.42868 -9.34225 -8.45355 -5.93851 -0.03156 1.31264 1.40026 1.41610 1.52450 1.58004 2.03849 2.07552 2.10661 2.29423 2.79651 3.21207 3.34197 3.48876 3.60819 3.71454 3.77692 3.84797 4.07894 4.24522 4.25196 4.37084 4.42913 4.45188 4.49206 4.53221 4.57527 4.66048 4.69443 4.71822 4.74070 4.76155 4.85238 4.98039 5.00559 5.08782 5.15848 5.24715 5.34998 5.41622 5.51429 5.82109 5.85018 5.91346 6.07722 6.39172 6.62357 6.96170 7.14475 7.58351 8.14640 8.71797 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.025393 B = 0.001886 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.418395 B =14844.705751 C =15394.821961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.027 3.973 3 C -0.233 4.233 4 C -0.089 4.089 5 C -0.093 4.093 6 C -0.122 4.122 7 C 0.604 3.396 8 O -0.549 6.549 9 N -0.701 5.701 10 C 0.145 3.855 11 H 0.102 0.898 12 C -0.123 4.123 13 C 0.043 3.957 14 N -0.512 5.512 15 C 0.048 3.952 16 C 0.442 3.558 17 O -0.616 6.616 18 N -0.575 5.575 19 C -0.332 4.332 20 H 0.078 0.922 21 C -0.014 4.014 22 N -0.921 5.921 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.033 3.967 28 O -0.173 6.173 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.182 0.818 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.414 0.586 37 H 0.069 0.931 38 H 0.083 0.917 39 H 0.051 0.949 40 H 0.063 0.937 41 H 0.074 0.926 42 H 0.113 0.887 43 H 0.396 0.604 44 H 0.277 0.723 45 H 0.077 0.923 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.976 27.115 6.266 29.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.025 4.025 3 C -0.251 4.251 4 C -0.092 4.092 5 C -0.150 4.150 6 C -0.173 4.173 7 C 0.392 3.608 8 O -0.429 6.429 9 N -0.352 5.352 10 C 0.040 3.960 11 H 0.120 0.880 12 C -0.162 4.162 13 C -0.085 4.085 14 N -0.237 5.237 15 C -0.083 4.083 16 C 0.229 3.771 17 O -0.502 6.502 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.096 0.904 21 C -0.214 4.214 22 N -0.562 5.562 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.095 4.095 28 O -0.070 6.070 29 H 0.118 0.882 30 H 0.105 0.895 31 H 0.135 0.865 32 H 0.200 0.800 33 H 0.094 0.906 34 H 0.108 0.892 35 H 0.087 0.913 36 H 0.250 0.750 37 H 0.088 0.912 38 H 0.102 0.898 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.092 0.908 42 H 0.131 0.869 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.944 26.977 5.364 29.248 hybrid contribution 0.708 -1.104 0.108 1.316 sum -9.236 25.873 5.472 28.012 Atomic orbital electron populations 1.20667 0.81596 1.05991 1.05282 1.23652 0.95850 0.83495 0.99510 1.21814 0.90787 1.01242 1.11293 1.21002 0.97772 0.92089 0.98289 1.20433 0.92932 0.98492 1.03108 1.21663 0.82202 0.94416 1.19021 1.16671 0.86127 0.81821 0.76154 1.90821 1.23161 1.76447 1.52502 1.45944 1.10742 1.04821 1.73680 1.21796 0.88541 0.89241 0.96470 0.87986 1.22841 1.01958 0.94637 0.96768 1.23156 0.93373 0.94095 0.97901 1.64411 1.43340 1.01458 1.14468 1.21953 1.01357 0.89286 0.95720 1.20764 0.82343 0.83902 0.90074 1.90483 1.52322 1.82006 1.25384 1.41922 1.58372 1.07428 1.13587 1.19600 1.43027 0.89371 0.94142 0.90422 1.26022 0.96142 0.99785 0.99415 1.69664 1.44051 1.21874 1.20568 0.85003 0.78751 0.76952 0.77711 1.19795 1.19486 1.19764 1.23194 1.03633 0.88967 0.93686 1.83993 1.15617 1.35844 1.71508 0.88215 0.89548 0.86523 0.80048 0.90557 0.89196 0.91304 0.74955 0.91181 0.89833 0.93098 0.91807 0.90810 0.86870 0.77010 0.91345 0.90461 0.88416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.41 71.24 0.74 0.29 16 2 C 0.03 0.40 7.31 24.97 0.18 0.58 16 3 C -0.23 -3.43 10.73 22.07 0.24 -3.19 16 4 C -0.09 -1.78 6.20 -19.74 -0.12 -1.90 16 5 C -0.09 -1.64 9.82 71.23 0.70 -0.94 16 6 C -0.12 -2.79 7.13 24.07 0.17 -2.62 16 7 C 0.60 15.22 7.78 86.44 0.67 15.89 16 8 O -0.55 -16.29 14.39 -4.36 -0.06 -16.35 16 9 N -0.70 -15.40 5.05 -442.34 -2.24 -17.64 16 10 C 0.14 3.30 3.34 45.87 0.15 3.46 16 11 H 0.10 2.33 7.56 -2.39 -0.02 2.31 16 12 C -0.12 -3.23 6.78 31.80 0.22 -3.02 16 13 C 0.04 1.36 5.93 86.65 0.51 1.87 16 14 N -0.51 -16.29 4.90 -887.55 -4.35 -20.64 16 15 C 0.05 1.64 5.19 85.56 0.44 2.09 16 16 C 0.44 21.11 7.61 87.66 0.67 21.77 16 17 O -0.62 -34.37 14.64 -3.04 -0.04 -34.41 16 18 N -0.58 -29.62 5.29 -306.99 -1.62 -31.24 16 19 C -0.33 -18.96 9.68 84.04 0.81 -18.14 16 20 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 21 C -0.01 -0.75 5.50 84.92 0.47 -0.29 16 22 N -0.92 -49.83 13.05 21.66 0.28 -49.55 16 23 Si 0.99 43.25 29.55 68.60 2.03 45.28 16 24 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 25 H -0.27 -11.08 7.11 99.48 0.71 -10.38 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 C 0.03 0.75 6.43 86.45 0.56 1.31 16 28 O -0.17 -3.48 10.40 -4.96 -0.05 -3.53 16 29 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 30 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 32 H 0.18 1.53 8.06 -2.91 -0.02 1.50 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.07 1.49 6.44 -2.39 -0.02 1.47 16 36 H 0.41 8.02 8.11 -92.71 -0.75 7.27 16 37 H 0.07 1.97 8.06 -2.39 -0.02 1.95 16 38 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 39 H 0.05 1.51 7.81 -2.38 -0.02 1.49 16 40 H 0.06 2.51 7.10 -2.39 -0.02 2.49 16 41 H 0.07 2.21 7.83 -2.39 -0.02 2.19 16 42 H 0.11 3.32 8.08 -2.39 -0.02 3.30 16 43 H 0.40 19.29 7.90 -92.71 -0.73 18.55 16 44 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 45 H 0.08 1.49 7.77 -2.39 -0.02 1.47 16 46 H 0.10 1.98 7.65 -2.39 -0.02 1.96 16 Total: -1.00 -73.99 385.13 -0.10 -74.09 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: -0.46 Total: 36.85 kcal Atomic # 6 Polarization: 10.74 SS G_CDS: 6.41 Total: 17.15 kcal Atomic # 7 Polarization: -111.14 SS G_CDS: -7.93 Total: -119.07 kcal Atomic # 8 Polarization: -54.13 SS G_CDS: -0.16 Total: -54.29 kcal Atomic # 14 Polarization: 43.25 SS G_CDS: 2.03 Total: 45.28 kcal Total: -73.99 -0.10 -74.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267739549.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.550 kcal (2) G-P(sol) polarization free energy of solvation -73.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds