Wall clock time and date at job start Tue Mar 31 2020 19:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40369 * 126.64651 * 2 1 4 4 C 1.35135 * 107.11356 * 180.02562 * 3 2 1 5 5 O 1.33931 * 108.76547 * 359.77292 * 4 3 2 6 6 C 1.34913 * 109.38810 * 0.37846 * 5 4 3 7 7 C 1.46658 * 125.98976 * 179.89260 * 6 5 4 8 8 O 1.21695 * 120.00157 * 179.69242 * 7 6 5 9 9 N 1.34774 * 119.99672 * 359.68325 * 7 6 5 10 10 C 1.46505 * 119.99823 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.53247 * 324.89957 * 10 9 7 12 12 C 1.53120 * 109.50507 * 84.99782 * 10 9 7 13 13 C 1.53116 * 109.20944 * 177.56469 * 12 10 9 14 14 C 1.53042 * 109.27547 * 302.44019 * 13 12 10 15 15 N 1.46845 * 109.57415 * 59.08943 * 14 13 12 16 16 C 1.46900 * 110.99948 * 174.19375 * 15 14 13 17 17 C 1.50701 * 109.47187 * 190.59759 * 16 15 14 18 18 O 1.21290 * 120.00046 * 6.27126 * 17 16 15 19 19 N 1.34774 * 120.00265 * 186.26828 * 17 16 15 20 20 C 1.37096 * 120.00275 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99895 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00115 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99996 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47180 * 59.99800 * 24 22 20 26 26 H 1.48503 * 109.47112 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46879 * 299.99642 * 24 22 20 28 28 C 1.46849 * 111.19743 * 298.28405 * 15 14 13 29 29 H 1.09001 * 109.47067 * 269.95845 * 1 2 3 30 30 H 1.08997 * 109.47277 * 29.95261 * 1 2 3 31 31 H 1.08997 * 109.47598 * 149.95762 * 1 2 3 32 32 H 1.07997 * 126.44138 * 0.03874 * 3 2 1 33 33 H 1.07998 * 125.61206 * 179.97438 * 4 3 2 34 34 H 0.96997 * 120.00721 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.51988 * 297.50122 * 12 10 9 36 36 H 1.09005 * 109.52112 * 57.62905 * 12 10 9 37 37 H 1.08997 * 109.50740 * 62.32218 * 13 12 10 38 38 H 1.09009 * 109.49945 * 182.43876 * 13 12 10 39 39 H 1.09001 * 109.41055 * 299.07146 * 14 13 12 40 40 H 1.09010 * 109.46260 * 179.13568 * 14 13 12 41 41 H 1.09006 * 109.47225 * 310.59508 * 16 15 14 42 42 H 1.08996 * 109.47667 * 70.59218 * 16 15 14 43 43 H 0.97011 * 119.99888 * 0.02562 * 19 17 16 44 44 H 0.96995 * 119.99864 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.46126 * 301.73064 * 28 15 14 46 46 H 1.08993 * 109.45285 * 181.75235 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6004 -0.6648 0.0041 6 6 2.3219 -1.0956 -0.0007 7 6 1.8842 -2.4953 -0.0001 8 8 0.6967 -2.7614 0.0009 9 7 2.7970 -3.4868 -0.0008 10 6 2.3597 -4.8851 -0.0008 11 1 1.4492 -4.9821 0.5905 12 6 2.0861 -5.3352 -1.4385 13 6 1.6885 -6.8138 -1.4364 14 6 2.8050 -7.6363 -0.7891 15 7 3.0280 -7.1678 0.5846 16 6 3.9968 -8.0239 1.2821 17 6 4.0068 -7.6795 2.7491 18 8 3.2006 -6.8888 3.1919 19 7 4.9115 -8.2500 3.5692 20 6 4.9202 -7.9370 4.9040 21 1 4.2023 -7.2330 5.2982 22 6 5.8532 -8.5248 5.7493 23 7 6.7270 -9.3811 5.2695 24 14 5.8656 -8.0979 7.5678 25 1 4.5574 -8.4600 8.1702 26 1 6.9487 -8.8539 8.2465 27 1 6.1001 -6.6408 7.7326 28 6 3.4574 -5.7636 0.6036 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8895 -0.5145 32 1 2.0306 2.1595 0.0006 33 1 4.5046 1.2916 -0.0011 34 1 3.7435 -3.2747 -0.0014 35 1 1.2749 -4.7404 -1.8582 36 1 2.9854 -5.2006 -2.0397 37 1 0.7671 -6.9421 -0.8685 38 1 1.5346 -7.1507 -2.4617 39 1 3.7223 -7.5193 -1.3662 40 1 2.5184 -8.6879 -0.7721 41 1 3.7147 -9.0693 1.1562 42 1 4.9907 -7.8631 0.8643 43 1 5.5565 -8.8821 3.2150 44 1 7.3785 -9.7912 5.8596 45 1 4.3716 -5.6555 0.0200 46 1 3.6444 -5.4551 1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001268157660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:23 Heat of formation + Delta-G solvation = -55.196709 kcal Electronic energy + Delta-G solvation = -28850.948144 eV Core-core repulsion = 24742.100901 eV Total energy + Delta-G solvation = -4108.847243 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.91078 -39.99142 -38.81088 -37.52249 -35.03502 -34.14796 -33.87815 -32.58491 -31.21063 -30.87931 -29.57781 -27.65491 -27.40716 -24.69930 -23.76580 -22.93452 -22.26067 -21.21264 -20.29578 -19.70090 -19.16055 -18.25190 -17.85490 -16.58478 -16.38334 -16.26070 -15.95228 -15.25925 -14.95573 -14.74529 -14.58285 -14.25593 -14.09627 -13.89720 -13.71750 -13.40327 -13.30482 -13.23456 -13.10911 -13.04428 -12.73654 -12.48431 -11.99773 -11.96468 -11.53780 -11.48260 -11.30244 -11.04985 -10.86699 -10.66377 -10.54389 -10.43806 -10.20975 -10.12520 -9.93553 -9.46984 -9.18950 -8.76182 -8.44525 -7.97681 -7.88844 -6.41376 -3.82057 0.88068 2.10963 2.49966 3.04863 3.09059 3.20429 3.26023 3.30675 3.91076 4.00655 4.25040 4.44916 4.54535 4.67800 4.86047 4.92608 4.98832 5.06427 5.23185 5.24076 5.26972 5.29953 5.39514 5.53289 5.56188 5.61386 5.62584 5.69925 5.79498 5.81205 5.83971 5.92910 5.97860 6.08264 6.11354 6.18270 6.24180 6.28848 6.40041 6.42454 6.64657 7.21847 7.35442 7.41066 7.55545 8.02781 8.06726 8.62425 9.18732 9.54949 10.07010 10.76348 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002790 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.820063 B =10032.015417 C =11793.488567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.089 4.089 3 C -0.226 4.226 4 C -0.005 4.005 5 O -0.163 6.163 6 C -0.083 4.083 7 C 0.606 3.394 8 O -0.516 6.516 9 N -0.712 5.712 10 C 0.151 3.849 11 H 0.103 0.897 12 C -0.129 4.129 13 C -0.112 4.112 14 C 0.052 3.948 15 N -0.510 5.510 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.575 6.575 19 N -0.565 5.565 20 C -0.299 4.299 21 H 0.102 0.898 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.273 1.273 26 H -0.285 1.285 27 H -0.274 1.274 28 C 0.051 3.949 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.087 0.913 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.403 0.597 35 H 0.068 0.932 36 H 0.059 0.941 37 H 0.076 0.924 38 H 0.069 0.931 39 H 0.030 0.970 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.047 0.953 43 H 0.392 0.608 44 H 0.272 0.728 45 H 0.028 0.972 46 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.370 14.452 -16.372 22.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.245 4.245 4 C -0.075 4.075 5 O -0.059 6.059 6 C -0.135 4.135 7 C 0.392 3.608 8 O -0.394 6.394 9 N -0.362 5.362 10 C 0.047 3.953 11 H 0.121 0.879 12 C -0.168 4.168 13 C -0.150 4.150 14 C -0.076 4.076 15 N -0.235 5.235 16 C -0.083 4.083 17 C 0.227 3.773 18 O -0.459 6.459 19 N -0.202 5.202 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.077 4.077 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.106 0.894 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.237 0.763 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.087 0.913 39 H 0.049 0.951 40 H 0.096 0.904 41 H 0.110 0.890 42 H 0.065 0.935 43 H 0.225 0.775 44 H 0.082 0.918 45 H 0.046 0.954 46 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -5.810 14.402 -15.706 22.087 hybrid contribution 1.902 0.177 0.315 1.936 sum -3.908 14.579 -15.391 21.557 Atomic orbital electron populations 1.20430 0.88175 1.03500 1.03054 1.20657 0.97730 0.90978 0.99813 1.21747 0.92466 1.00143 1.10181 1.24358 0.99968 0.80641 1.02530 1.84067 1.28395 1.22706 1.70690 1.21937 0.81472 0.94907 1.15183 1.16468 0.85810 0.81706 0.76847 1.90851 1.15621 1.82239 1.50679 1.45888 1.09816 1.06297 1.74159 1.21017 0.99594 0.78179 0.96533 0.87873 1.21982 1.01560 0.96808 0.96468 1.21515 0.99335 0.93854 1.00292 1.22178 0.97475 0.99526 0.88411 1.61336 1.46462 1.01261 1.14449 1.21856 0.94005 0.97916 0.94548 1.19761 0.84548 0.85896 0.87137 1.90522 1.40927 1.37701 1.76707 1.41874 1.29945 1.40078 1.08259 1.19647 1.15854 1.24378 0.82933 0.87981 1.25249 0.95783 0.96307 1.00564 1.69602 1.19042 1.29030 1.36746 0.85931 0.77887 0.78562 0.81927 1.19866 1.20996 1.19938 1.22329 0.94110 0.88281 1.03029 0.90683 0.91589 0.89422 0.82710 0.77374 0.76268 0.91356 0.92238 0.90567 0.91262 0.95143 0.90447 0.88977 0.93500 0.77522 0.91845 0.95415 0.87813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.81 36.00 0.35 -0.63 16 2 C -0.09 -1.02 6.20 -104.43 -0.65 -1.67 16 3 C -0.23 -2.01 10.83 -39.88 -0.43 -2.44 16 4 C -0.01 -0.04 12.08 29.63 0.36 0.32 16 5 O -0.16 -1.81 10.40 5.00 0.05 -1.76 16 6 C -0.08 -1.07 7.13 -36.80 -0.26 -1.33 16 7 C 0.61 8.77 7.75 -12.86 -0.10 8.67 16 8 O -0.52 -8.66 14.40 5.19 0.07 -8.58 16 9 N -0.71 -9.45 5.08 -55.04 -0.28 -9.73 16 10 C 0.15 2.18 2.62 -67.85 -0.18 2.01 16 11 H 0.10 1.80 7.58 -51.93 -0.39 1.41 16 12 C -0.13 -1.57 5.57 -26.61 -0.15 -1.72 16 13 C -0.11 -1.28 6.10 -26.65 -0.16 -1.44 16 14 C 0.05 0.65 5.46 -3.83 -0.02 0.63 16 15 N -0.51 -8.36 4.35 -236.11 -1.03 -9.39 16 16 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 17 C 0.44 10.30 7.31 -10.99 -0.08 10.22 16 18 O -0.57 -15.42 14.29 5.55 0.08 -15.34 16 19 N -0.56 -14.18 5.29 -10.96 -0.06 -14.24 16 20 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.60 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 24 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.77 16 28 C 0.05 0.81 4.59 -3.83 -0.02 0.79 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.09 1.05 6.45 -51.93 -0.33 0.71 16 32 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 33 H 0.21 0.79 8.06 -52.49 -0.42 0.36 16 34 H 0.40 4.62 8.36 -40.82 -0.34 4.28 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 38 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 39 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.08 0.90 8.01 -51.92 -0.42 0.48 16 41 H 0.09 1.45 7.98 -51.93 -0.41 1.04 16 42 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 43 H 0.39 9.40 7.90 -40.81 -0.32 9.08 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 45 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.10 2.03 6.06 -51.93 -0.31 1.72 16 LS Contribution 380.96 15.07 5.74 5.74 Total: -1.00 -33.17 380.96 -8.02 -41.19 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: -6.70 Total: 13.52 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -1.61 Total: 6.28 kcal Atomic # 7 Polarization: -56.48 SS G_CDS: -0.64 Total: -57.12 kcal Atomic # 8 Polarization: -25.89 SS G_CDS: 0.21 Total: -25.69 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -33.17 -8.02 -41.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268157660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.007 kcal (2) G-P(sol) polarization free energy of solvation -33.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds