Wall clock time and date at job start Tue Mar 31 2020 19:10:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.40369 * 126.64651 * 2 1 4 4 C 1.35135 * 107.11356 * 180.02562 * 3 2 1 5 5 O 1.33931 * 108.76547 * 359.77292 * 4 3 2 6 6 C 1.34913 * 109.38810 * 0.37846 * 5 4 3 7 7 C 1.46658 * 125.98976 * 179.89260 * 6 5 4 8 8 O 1.21695 * 120.00157 * 179.69242 * 7 6 5 9 9 N 1.34774 * 119.99672 * 359.68325 * 7 6 5 10 10 C 1.46505 * 119.99823 * 180.02562 * 9 7 6 11 11 H 1.09001 * 109.53247 * 324.89957 * 10 9 7 12 12 C 1.53120 * 109.50507 * 84.99782 * 10 9 7 13 13 C 1.53116 * 109.20944 * 177.56469 * 12 10 9 14 14 C 1.53042 * 109.27547 * 302.44019 * 13 12 10 15 15 N 1.46845 * 109.57415 * 59.08943 * 14 13 12 16 16 C 1.46900 * 110.99948 * 174.19375 * 15 14 13 17 17 C 1.50701 * 109.47187 * 190.59759 * 16 15 14 18 18 O 1.21290 * 120.00046 * 6.27126 * 17 16 15 19 19 N 1.34774 * 120.00265 * 186.26828 * 17 16 15 20 20 C 1.37096 * 120.00275 * 180.02562 * 19 17 16 21 21 H 1.08000 * 119.99895 * 359.97438 * 20 19 17 22 22 C 1.38953 * 120.00115 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99996 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00053 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47180 * 59.99800 * 24 22 20 26 26 H 1.48503 * 109.47112 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.46879 * 299.99642 * 24 22 20 28 28 C 1.46849 * 111.19743 * 298.28405 * 15 14 13 29 29 H 1.09001 * 109.47067 * 269.95845 * 1 2 3 30 30 H 1.08997 * 109.47277 * 29.95261 * 1 2 3 31 31 H 1.08997 * 109.47598 * 149.95762 * 1 2 3 32 32 H 1.07997 * 126.44138 * 0.03874 * 3 2 1 33 33 H 1.07998 * 125.61206 * 179.97438 * 4 3 2 34 34 H 0.96997 * 120.00721 * 0.02562 * 9 7 6 35 35 H 1.08999 * 109.51988 * 297.50122 * 12 10 9 36 36 H 1.09005 * 109.52112 * 57.62905 * 12 10 9 37 37 H 1.08997 * 109.50740 * 62.32218 * 13 12 10 38 38 H 1.09009 * 109.49945 * 182.43876 * 13 12 10 39 39 H 1.09001 * 109.41055 * 299.07146 * 14 13 12 40 40 H 1.09010 * 109.46260 * 179.13568 * 14 13 12 41 41 H 1.09006 * 109.47225 * 310.59508 * 16 15 14 42 42 H 1.08996 * 109.47667 * 70.59218 * 16 15 14 43 43 H 0.97011 * 119.99888 * 0.02562 * 19 17 16 44 44 H 0.96995 * 119.99864 * 179.97438 * 23 22 20 45 45 H 1.09002 * 109.46126 * 301.73064 * 28 15 14 46 46 H 1.08993 * 109.45285 * 181.75235 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6184 0.6744 -0.0006 5 8 3.6004 -0.6648 0.0041 6 6 2.3219 -1.0956 -0.0007 7 6 1.8842 -2.4953 -0.0001 8 8 0.6967 -2.7614 0.0009 9 7 2.7970 -3.4868 -0.0008 10 6 2.3597 -4.8851 -0.0008 11 1 1.4492 -4.9821 0.5905 12 6 2.0861 -5.3352 -1.4385 13 6 1.6885 -6.8138 -1.4364 14 6 2.8050 -7.6363 -0.7891 15 7 3.0280 -7.1678 0.5846 16 6 3.9968 -8.0239 1.2821 17 6 4.0068 -7.6795 2.7491 18 8 3.2006 -6.8888 3.1919 19 7 4.9115 -8.2500 3.5692 20 6 4.9202 -7.9370 4.9040 21 1 4.2023 -7.2330 5.2982 22 6 5.8532 -8.5248 5.7493 23 7 6.7270 -9.3811 5.2695 24 14 5.8656 -8.0979 7.5678 25 1 4.5574 -8.4600 8.1702 26 1 6.9487 -8.8539 8.2465 27 1 6.1001 -6.6408 7.7326 28 6 3.4574 -5.7636 0.6036 29 1 -0.3633 -0.0007 1.0277 30 1 -0.3634 0.8904 -0.5131 31 1 -0.3634 -0.8895 -0.5145 32 1 2.0306 2.1595 0.0006 33 1 4.5046 1.2916 -0.0011 34 1 3.7435 -3.2747 -0.0014 35 1 1.2749 -4.7404 -1.8582 36 1 2.9854 -5.2006 -2.0397 37 1 0.7671 -6.9421 -0.8685 38 1 1.5346 -7.1507 -2.4617 39 1 3.7223 -7.5193 -1.3662 40 1 2.5184 -8.6879 -0.7721 41 1 3.7147 -9.0693 1.1562 42 1 4.9907 -7.8631 0.8643 43 1 5.5565 -8.8821 3.2150 44 1 7.3785 -9.7912 5.8596 45 1 4.3716 -5.6555 0.0200 46 1 3.6444 -5.4551 1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001268157660.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:10:22 Heat of formation + Delta-G solvation = -80.280004 kcal Electronic energy + Delta-G solvation = -28852.035837 eV Core-core repulsion = 24742.100901 eV Total energy + Delta-G solvation = -4109.934936 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70396 -41.17379 -40.29302 -39.03945 -36.23644 -35.84261 -34.99520 -33.78232 -33.22065 -31.75959 -30.57383 -29.01077 -28.45170 -26.51777 -24.75683 -24.23275 -23.18352 -22.10526 -21.35297 -21.02142 -20.65498 -19.86793 -19.18906 -17.74870 -17.51056 -17.43501 -17.10353 -16.55344 -16.44790 -16.20535 -15.81957 -15.73731 -15.45446 -15.21738 -14.81335 -14.77139 -14.46161 -14.28600 -14.05964 -13.91302 -13.80117 -13.56666 -13.52943 -13.26722 -13.05090 -12.81790 -12.74281 -12.43608 -12.39587 -12.13410 -11.95929 -11.79526 -11.65274 -11.44712 -11.21339 -10.69790 -10.36687 -10.21755 -9.99250 -9.60214 -9.21376 -8.46372 -5.94636 -0.00834 1.38695 1.38715 1.40576 1.51188 1.62407 2.03305 2.06853 2.09994 2.28795 2.82248 3.20697 3.39556 3.60356 3.76869 3.81004 3.82442 3.93688 4.03419 4.13752 4.23973 4.33034 4.44053 4.50780 4.55636 4.60803 4.62105 4.66193 4.71463 4.73256 4.75099 4.90900 4.97458 5.04007 5.08342 5.15588 5.19743 5.25408 5.38759 5.41061 5.45561 5.83813 5.87787 6.06279 6.22000 6.37678 6.61928 6.95859 7.13993 7.57847 8.14552 8.70840 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.011087 B = 0.002790 C = 0.002374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2524.820063 B =10032.015417 C =11793.488567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.094 4.094 3 C -0.235 4.235 4 C 0.014 3.986 5 O -0.173 6.173 6 C -0.121 4.121 7 C 0.601 3.399 8 O -0.552 6.552 9 N -0.707 5.707 10 C 0.158 3.842 11 H 0.063 0.937 12 C -0.120 4.120 13 C -0.107 4.107 14 C 0.053 3.947 15 N -0.535 5.535 16 C 0.061 3.939 17 C 0.439 3.561 18 O -0.616 6.616 19 N -0.574 5.574 20 C -0.332 4.332 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.273 1.273 28 C 0.060 3.940 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.185 0.815 33 H 0.256 0.744 34 H 0.412 0.588 35 H 0.061 0.939 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.102 0.898 39 H 0.052 0.948 40 H 0.092 0.908 41 H 0.116 0.884 42 H 0.071 0.929 43 H 0.396 0.604 44 H 0.278 0.722 45 H 0.051 0.949 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.958 15.359 -17.946 23.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.097 4.097 3 C -0.253 4.253 4 C -0.056 4.056 5 O -0.069 6.069 6 C -0.172 4.172 7 C 0.389 3.611 8 O -0.432 6.432 9 N -0.357 5.357 10 C 0.053 3.947 11 H 0.081 0.919 12 C -0.158 4.158 13 C -0.146 4.146 14 C -0.074 4.074 15 N -0.260 5.260 16 C -0.070 4.070 17 C 0.226 3.774 18 O -0.502 6.502 19 N -0.212 5.212 20 C -0.462 4.462 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.813 3.187 25 H -0.199 1.199 26 H -0.193 1.193 27 H -0.198 1.198 28 C -0.069 4.069 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.084 0.916 32 H 0.202 0.798 33 H 0.272 0.728 34 H 0.248 0.752 35 H 0.080 0.920 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.070 0.930 40 H 0.110 0.890 41 H 0.134 0.866 42 H 0.089 0.911 43 H 0.230 0.770 44 H 0.087 0.913 45 H 0.069 0.931 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -4.370 15.291 -17.310 23.506 hybrid contribution 1.453 0.005 0.785 1.652 sum -2.916 15.296 -16.525 22.706 Atomic orbital electron populations 1.20432 0.87978 1.03758 1.02937 1.21052 0.98317 0.91798 0.98569 1.22111 0.92198 1.00733 1.10303 1.25371 1.01524 0.79581 0.99091 1.84054 1.27474 1.24380 1.71017 1.21634 0.82647 0.94227 1.18741 1.16761 0.85483 0.82709 0.76184 1.90817 1.16909 1.83050 1.52454 1.45826 1.10213 1.05798 1.73859 1.20823 0.97425 0.78743 0.97671 0.91907 1.21909 1.02194 0.97249 0.94479 1.21533 0.98177 0.93091 1.01763 1.22301 0.98655 1.00308 0.86163 1.61278 1.46421 1.01179 1.17157 1.21733 0.95868 0.99237 0.90173 1.20859 0.82839 0.84196 0.89481 1.90502 1.42267 1.39197 1.78221 1.41929 1.30768 1.40696 1.07794 1.19581 1.16535 1.25321 0.84734 0.90618 1.25983 0.94989 0.95840 1.04302 1.69657 1.19154 1.29154 1.38127 0.85042 0.78126 0.78415 0.77077 1.19898 1.19335 1.19798 1.22131 0.95466 0.88569 1.00745 0.90936 0.88875 0.91562 0.79792 0.72821 0.75245 0.92010 0.90227 0.92351 0.88000 0.92999 0.89007 0.86610 0.91074 0.76972 0.91300 0.93116 0.92333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.99 9.81 71.23 0.70 -1.29 16 2 C -0.09 -2.14 6.20 -19.74 -0.12 -2.26 16 3 C -0.23 -3.60 10.83 22.07 0.24 -3.36 16 4 C 0.01 0.18 12.08 67.10 0.81 0.99 16 5 O -0.17 -3.69 10.40 -5.03 -0.05 -3.74 16 6 C -0.12 -3.17 7.13 24.07 0.17 -3.00 16 7 C 0.60 18.47 7.75 86.44 0.67 19.14 16 8 O -0.55 -20.00 14.40 -4.33 -0.06 -20.06 16 9 N -0.71 -19.69 5.08 -446.26 -2.27 -21.95 16 10 C 0.16 4.76 2.62 45.04 0.12 4.88 16 11 H 0.06 2.40 7.58 -2.39 -0.02 2.38 16 12 C -0.12 -2.80 5.57 30.67 0.17 -2.63 16 13 C -0.11 -2.27 6.10 30.65 0.19 -2.08 16 14 C 0.05 1.18 5.46 86.33 0.47 1.65 16 15 N -0.53 -17.21 4.35 -900.90 -3.92 -21.13 16 16 C 0.06 2.07 5.45 85.56 0.47 2.53 16 17 C 0.44 20.99 7.31 87.66 0.64 21.63 16 18 O -0.62 -34.72 14.29 -3.06 -0.04 -34.76 16 19 N -0.57 -29.52 5.29 -306.99 -1.62 -31.14 16 20 C -0.33 -19.03 9.68 84.04 0.81 -18.21 16 21 H 0.08 4.65 7.16 -2.91 -0.02 4.63 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.69 13.05 21.66 0.28 -49.40 16 24 Si 0.99 43.39 29.55 68.60 2.03 45.42 16 25 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.34 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.13 16 28 C 0.06 1.92 4.59 86.33 0.40 2.32 16 29 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 30 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.07 1.69 6.45 -2.39 -0.02 1.67 16 32 H 0.18 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.26 0.75 8.06 -2.91 -0.02 0.72 16 34 H 0.41 9.73 8.36 -92.71 -0.77 8.96 16 35 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.08 1.56 8.14 -2.38 -0.02 1.55 16 37 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 39 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 1.83 8.01 -2.38 -0.02 1.81 16 41 H 0.12 3.41 7.98 -2.38 -0.02 3.39 16 42 H 0.07 2.10 8.12 -2.39 -0.02 2.08 16 43 H 0.40 19.22 7.90 -92.70 -0.73 18.49 16 44 H 0.28 14.06 8.31 -92.71 -0.77 13.29 16 45 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 46 H 0.06 2.43 6.06 -2.39 -0.01 2.42 16 Total: -1.00 -76.71 380.96 0.06 -76.65 By element: Atomic # 1 Polarization: 40.45 SS G_CDS: -0.49 Total: 39.97 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.20 Total: 20.16 kcal Atomic # 7 Polarization: -116.10 SS G_CDS: -7.52 Total: -123.63 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -0.16 Total: -58.57 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -76.71 0.06 -76.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001268157660.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.631 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds