Wall clock time and date at job start Tue Mar 31 2020 19:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40362 * 126.64757 * 2 1 4 4 C 1.35124 * 107.11802 * 180.02562 * 3 2 1 5 5 O 1.33932 * 108.76749 * 359.75332 * 4 3 2 6 6 C 1.34917 * 109.38241 * 0.40762 * 5 4 3 7 7 C 1.46658 * 125.98752 * 179.86127 * 6 5 4 8 8 O 1.21693 * 120.00069 * 186.06549 * 7 6 5 9 9 N 1.34776 * 120.00076 * 6.06508 * 7 6 5 10 10 C 1.46498 * 119.99824 * 5.35126 * 9 7 6 11 11 C 1.46498 * 120.00153 * 185.34721 * 9 7 6 12 12 H 1.09004 * 110.62745 * 356.89637 * 11 9 7 13 13 C 1.55141 * 110.85614 * 233.68652 * 11 9 7 14 14 C 1.54909 * 101.65457 * 205.89169 * 13 11 9 15 15 N 1.47848 * 104.79159 * 37.07226 * 14 13 11 16 16 C 1.46907 * 110.99741 * 213.63672 * 15 14 13 17 17 C 1.50694 * 109.47045 * 290.84163 * 16 15 14 18 18 O 1.21302 * 120.00151 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00360 * 179.72837 * 17 16 15 20 20 C 1.37091 * 120.00650 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99964 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00313 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99964 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47260 * 89.99977 * 24 22 20 26 26 H 1.48496 * 109.47431 * 209.99921 * 24 22 20 27 27 H 1.48504 * 109.47303 * 330.00121 * 24 22 20 28 28 C 1.47447 * 108.56910 * 335.90323 * 15 14 13 29 29 H 1.09003 * 109.47210 * 269.97341 * 1 2 3 30 30 H 1.08999 * 109.47134 * 29.97149 * 1 2 3 31 31 H 1.09000 * 109.47318 * 149.97308 * 1 2 3 32 32 H 1.07997 * 126.44059 * 0.02562 * 3 2 1 33 33 H 1.08003 * 125.61826 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47131 * 275.29381 * 10 9 7 35 35 H 1.09002 * 109.47253 * 35.29842 * 10 9 7 36 36 H 1.09000 * 109.47201 * 155.29768 * 10 9 7 37 37 H 1.08997 * 110.99196 * 323.98611 * 13 11 9 38 38 H 1.09003 * 110.98895 * 87.80779 * 13 11 9 39 39 H 1.08999 * 110.37372 * 278.24711 * 14 13 11 40 40 H 1.08991 * 110.37502 * 155.89887 * 14 13 11 41 41 H 1.08998 * 109.46915 * 170.84376 * 16 15 14 42 42 H 1.08997 * 109.47517 * 50.84359 * 16 15 14 43 43 H 0.97007 * 119.99578 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00090 * 180.02562 * 23 22 20 45 45 H 1.08993 * 109.88753 * 120.40019 * 28 15 14 46 46 H 1.09000 * 109.88638 * 241.42678 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0045 6 6 2.3220 -1.0956 -0.0006 7 6 1.8842 -2.4953 -0.0004 8 8 0.7029 -2.7634 -0.1167 9 7 2.7903 -3.4847 0.1287 10 6 4.1959 -3.1617 0.3860 11 6 2.3695 -4.8831 0.0117 12 1 1.2900 -4.9492 -0.1241 13 6 2.8174 -5.7002 1.2521 14 6 2.9090 -7.1318 0.6673 15 7 3.4341 -6.9471 -0.7024 16 6 2.8740 -7.9481 -1.6202 17 6 3.4251 -9.3081 -1.2772 18 8 4.2071 -9.4315 -0.3582 19 7 3.0445 -10.3883 -1.9877 20 6 3.5454 -11.6256 -1.6753 21 1 4.2447 -11.7349 -0.8596 22 6 3.1526 -12.7393 -2.4075 23 7 3.6323 -13.9254 -2.1077 24 14 1.9414 -12.5507 -3.8170 25 1 2.6842 -12.2933 -5.0769 26 1 1.1467 -13.7973 -3.9569 27 1 1.0305 -11.4116 -3.5379 28 6 3.1093 -5.5801 -1.1494 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 2.0306 2.1594 0.0004 33 1 4.5046 1.2916 -0.0011 34 1 4.7007 -2.9582 -0.5584 35 1 4.2551 -2.2819 1.0267 36 1 4.6776 -4.0049 0.8811 37 1 3.7892 -5.3625 1.6120 38 1 2.0701 -5.6491 2.0439 39 1 1.9219 -7.5929 0.6363 40 1 3.5945 -7.7397 1.2577 41 1 3.1457 -7.6939 -2.6448 42 1 1.7883 -7.9614 -1.5249 43 1 2.4155 -10.2903 -2.7197 44 1 3.3584 -14.7028 -2.6191 45 1 4.0260 -5.0388 -1.3832 46 1 2.4679 -5.6205 -2.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001269209222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:41 Heat of formation + Delta-G solvation = -26.501873 kcal Electronic energy + Delta-G solvation = -28748.538778 eV Core-core repulsion = 24640.935836 eV Total energy + Delta-G solvation = -4107.602942 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.11762 -40.33115 -38.94771 -37.70879 -35.65161 -34.32637 -33.89301 -31.82267 -31.49587 -30.59241 -28.84690 -28.01350 -27.32463 -26.42745 -24.14464 -23.26536 -21.91916 -21.13168 -20.46263 -19.58681 -19.34757 -18.34973 -17.94673 -17.11023 -16.78935 -16.40671 -15.91349 -15.60097 -15.14496 -14.86378 -14.62248 -14.48407 -14.07199 -13.65893 -13.58171 -13.56020 -13.37394 -13.24306 -12.99445 -12.93709 -12.87310 -12.56151 -12.29389 -12.16999 -12.10436 -11.90703 -11.67084 -11.54426 -11.21976 -11.05802 -10.69427 -10.57829 -10.36028 -10.08380 -9.95780 -9.53873 -9.16070 -8.84404 -8.56866 -8.15923 -7.97267 -6.29107 -3.80300 0.69353 1.94337 2.26562 2.73420 2.83789 3.04329 3.08558 3.16635 3.76641 3.97081 4.12089 4.14341 4.38841 4.44288 4.48499 4.65528 4.79289 4.88173 4.97958 5.09449 5.13943 5.18344 5.22531 5.25681 5.30852 5.35671 5.39304 5.50491 5.57012 5.66014 5.67820 5.72532 5.78520 5.83424 5.86729 5.94199 6.02676 6.05907 6.22848 6.37317 6.51853 6.99129 7.10795 7.13817 7.60577 7.72321 8.16485 8.62601 8.97544 9.44813 9.86118 10.84053 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027763 B = 0.002098 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.292385 B =13343.806339 C =13763.516431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.087 4.087 3 C -0.225 4.225 4 C -0.009 4.009 5 O -0.157 6.157 6 C -0.083 4.083 7 C 0.603 3.397 8 O -0.520 6.520 9 N -0.595 5.595 10 C 0.073 3.927 11 C 0.119 3.881 12 H 0.109 0.891 13 C -0.140 4.140 14 C 0.053 3.947 15 N -0.501 5.501 16 C 0.036 3.964 17 C 0.454 3.546 18 O -0.559 6.559 19 N -0.593 5.593 20 C -0.303 4.303 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.879 3.121 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.033 3.967 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.089 0.911 32 H 0.155 0.845 33 H 0.210 0.790 34 H 0.062 0.938 35 H 0.077 0.923 36 H 0.086 0.914 37 H 0.082 0.918 38 H 0.078 0.922 39 H 0.046 0.954 40 H 0.100 0.900 41 H 0.090 0.910 42 H 0.052 0.948 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.082 0.918 46 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.497 31.139 3.055 31.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 C -0.244 4.244 4 C -0.078 4.078 5 O -0.053 6.053 6 C -0.135 4.135 7 C 0.391 3.609 8 O -0.399 6.399 9 N -0.326 5.326 10 C -0.069 4.069 11 C 0.015 3.985 12 H 0.127 0.873 13 C -0.179 4.179 14 C -0.074 4.074 15 N -0.225 5.225 16 C -0.096 4.096 17 C 0.240 3.760 18 O -0.440 6.440 19 N -0.233 5.233 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.096 4.096 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.107 0.893 32 H 0.173 0.827 33 H 0.226 0.774 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.101 0.899 38 H 0.096 0.904 39 H 0.065 0.935 40 H 0.118 0.882 41 H 0.108 0.892 42 H 0.070 0.930 43 H 0.202 0.798 44 H 0.083 0.917 45 H 0.100 0.900 46 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.777 30.353 3.574 30.688 hybrid contribution -1.705 0.363 -1.303 2.177 sum -4.482 30.716 2.271 31.124 Atomic orbital electron populations 1.20458 0.88227 1.03824 1.02907 1.20664 0.97693 0.91019 0.99595 1.21749 0.92475 1.00145 1.10073 1.24431 0.99959 0.81118 1.02324 1.84277 1.28148 1.22249 1.70608 1.21765 0.81553 0.94617 1.15528 1.16639 0.85371 0.81916 0.76951 1.90836 1.15874 1.82110 1.51058 1.47641 1.09053 1.05773 1.70146 1.21968 0.80728 1.02200 1.02007 1.22480 1.00899 0.78932 0.96189 0.87255 1.23147 1.02411 0.95382 0.96923 1.23026 0.99439 0.95363 0.89614 1.63299 1.57054 1.00205 1.01953 1.22178 0.97228 0.92674 0.97474 1.19609 0.85966 0.84717 0.85742 1.90547 1.36847 1.85446 1.31177 1.42209 1.42074 1.07673 1.31309 1.19415 1.25115 0.81291 1.17341 0.86284 1.25034 0.98001 0.95035 0.98167 1.69621 1.43636 0.98544 1.40449 0.86677 0.81400 0.78374 0.82961 1.19629 1.20222 1.19536 1.23201 0.99760 0.90128 0.96534 0.90849 0.91420 0.89269 0.82748 0.77395 0.91938 0.90494 0.89586 0.89920 0.90372 0.93530 0.88185 0.89206 0.93042 0.79757 0.91657 0.89954 0.92201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.84 9.89 36.01 0.36 -0.48 16 2 C -0.09 -0.82 6.20 -104.43 -0.65 -1.47 16 3 C -0.23 -1.56 10.83 -39.89 -0.43 -1.99 16 4 C -0.01 -0.05 12.08 29.62 0.36 0.31 16 5 O -0.16 -1.33 7.54 4.98 0.04 -1.30 16 6 C -0.08 -0.87 6.70 -36.80 -0.25 -1.12 16 7 C 0.60 7.35 7.63 -12.86 -0.10 7.25 16 8 O -0.52 -7.56 14.10 5.19 0.07 -7.49 16 9 N -0.59 -6.46 2.88 -173.40 -0.50 -6.96 16 10 C 0.07 0.62 8.14 59.85 0.49 1.11 16 11 C 0.12 1.40 3.35 -66.11 -0.22 1.18 16 12 H 0.11 1.41 7.00 -51.93 -0.36 1.04 16 13 C -0.14 -1.63 6.58 -24.59 -0.16 -1.79 16 14 C 0.05 0.80 5.74 -2.30 -0.01 0.79 16 15 N -0.50 -7.91 4.86 -232.69 -1.13 -9.05 16 16 C 0.04 0.61 5.05 -4.98 -0.03 0.59 16 17 C 0.45 10.32 7.58 -10.99 -0.08 10.24 16 18 O -0.56 -14.83 14.61 5.54 0.08 -14.75 16 19 N -0.59 -14.19 5.09 -10.97 -0.06 -14.25 16 20 C -0.30 -8.59 10.16 -14.94 -0.15 -8.74 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 23 N -0.88 -25.89 13.96 55.50 0.77 -25.11 16 24 Si 0.88 19.53 27.74 -169.99 -4.71 14.82 16 25 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 26 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.27 -5.48 6.52 56.52 0.37 -5.11 16 28 C 0.03 0.41 6.51 -2.83 -0.02 0.39 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.09 0.93 6.34 -51.93 -0.33 0.61 16 32 H 0.15 0.70 8.06 -52.49 -0.42 0.28 16 33 H 0.21 0.36 8.06 -52.48 -0.42 -0.07 16 34 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 35 H 0.08 0.60 5.97 -51.93 -0.31 0.29 16 36 H 0.09 0.71 6.05 -51.93 -0.31 0.39 16 37 H 0.08 0.90 6.08 -51.93 -0.32 0.59 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.71 7.62 -51.93 -0.40 0.31 16 40 H 0.10 1.75 7.37 -51.93 -0.38 1.37 16 41 H 0.09 1.34 8.03 -51.93 -0.42 0.92 16 42 H 0.05 0.78 7.85 -51.93 -0.41 0.37 16 43 H 0.37 7.81 5.76 -40.82 -0.24 7.57 16 44 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 45 H 0.08 0.99 7.13 -51.93 -0.37 0.62 16 46 H 0.06 0.72 7.55 -51.93 -0.39 0.32 16 LS Contribution 370.51 15.07 5.58 5.58 Total: -1.00 -34.61 370.51 -7.17 -41.78 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: -6.32 Total: 9.44 kcal Atomic # 6 Polarization: 8.27 SS G_CDS: -0.99 Total: 7.27 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.91 Total: -55.37 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.19 Total: -23.53 kcal Atomic # 14 Polarization: 19.53 SS G_CDS: -4.71 Total: 14.82 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -34.61 -7.17 -41.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269209222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.275 kcal (2) G-P(sol) polarization free energy of solvation -34.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds