Wall clock time and date at job start Tue Mar 31 2020 19:09:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.40362 * 126.64757 * 2 1 4 4 C 1.35124 * 107.11802 * 180.02562 * 3 2 1 5 5 O 1.33932 * 108.76749 * 359.75332 * 4 3 2 6 6 C 1.34917 * 109.38241 * 0.40762 * 5 4 3 7 7 C 1.46658 * 125.98752 * 179.86127 * 6 5 4 8 8 O 1.21693 * 120.00069 * 186.06549 * 7 6 5 9 9 N 1.34776 * 120.00076 * 6.06508 * 7 6 5 10 10 C 1.46498 * 119.99824 * 5.35126 * 9 7 6 11 11 C 1.46498 * 120.00153 * 185.34721 * 9 7 6 12 12 H 1.09004 * 110.62745 * 356.89637 * 11 9 7 13 13 C 1.55141 * 110.85614 * 233.68652 * 11 9 7 14 14 C 1.54909 * 101.65457 * 205.89169 * 13 11 9 15 15 N 1.47848 * 104.79159 * 37.07226 * 14 13 11 16 16 C 1.46907 * 110.99741 * 213.63672 * 15 14 13 17 17 C 1.50694 * 109.47045 * 290.84163 * 16 15 14 18 18 O 1.21302 * 120.00151 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00360 * 179.72837 * 17 16 15 20 20 C 1.37091 * 120.00650 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99964 * 0.02562 * 20 19 17 22 22 C 1.38949 * 120.00429 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00313 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99964 * 359.97438 * 22 20 19 25 25 H 1.48508 * 109.47260 * 89.99977 * 24 22 20 26 26 H 1.48496 * 109.47431 * 209.99921 * 24 22 20 27 27 H 1.48504 * 109.47303 * 330.00121 * 24 22 20 28 28 C 1.47447 * 108.56910 * 335.90323 * 15 14 13 29 29 H 1.09003 * 109.47210 * 269.97341 * 1 2 3 30 30 H 1.08999 * 109.47134 * 29.97149 * 1 2 3 31 31 H 1.09000 * 109.47318 * 149.97308 * 1 2 3 32 32 H 1.07997 * 126.44059 * 0.02562 * 3 2 1 33 33 H 1.08003 * 125.61826 * 179.97438 * 4 3 2 34 34 H 1.09001 * 109.47131 * 275.29381 * 10 9 7 35 35 H 1.09002 * 109.47253 * 35.29842 * 10 9 7 36 36 H 1.09000 * 109.47201 * 155.29768 * 10 9 7 37 37 H 1.08997 * 110.99196 * 323.98611 * 13 11 9 38 38 H 1.09003 * 110.98895 * 87.80779 * 13 11 9 39 39 H 1.08999 * 110.37372 * 278.24711 * 14 13 11 40 40 H 1.08991 * 110.37502 * 155.89887 * 14 13 11 41 41 H 1.08998 * 109.46915 * 170.84376 * 16 15 14 42 42 H 1.08997 * 109.47517 * 50.84359 * 16 15 14 43 43 H 0.97007 * 119.99578 * 359.97438 * 19 17 16 44 44 H 0.97001 * 120.00090 * 180.02562 * 23 22 20 45 45 H 1.08993 * 109.88753 * 120.40019 * 28 15 14 46 46 H 1.09000 * 109.88638 * 241.42678 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3448 1.1262 0.0000 4 6 3.6183 0.6744 -0.0006 5 8 3.6005 -0.6647 0.0045 6 6 2.3220 -1.0956 -0.0006 7 6 1.8842 -2.4953 -0.0004 8 8 0.7029 -2.7634 -0.1167 9 7 2.7903 -3.4847 0.1287 10 6 4.1959 -3.1617 0.3860 11 6 2.3695 -4.8831 0.0117 12 1 1.2900 -4.9492 -0.1241 13 6 2.8174 -5.7002 1.2521 14 6 2.9090 -7.1318 0.6673 15 7 3.4341 -6.9471 -0.7024 16 6 2.8740 -7.9481 -1.6202 17 6 3.4251 -9.3081 -1.2772 18 8 4.2071 -9.4315 -0.3582 19 7 3.0445 -10.3883 -1.9877 20 6 3.5454 -11.6256 -1.6753 21 1 4.2447 -11.7349 -0.8596 22 6 3.1526 -12.7393 -2.4075 23 7 3.6323 -13.9254 -2.1077 24 14 1.9414 -12.5507 -3.8170 25 1 2.6842 -12.2933 -5.0769 26 1 1.1467 -13.7973 -3.9569 27 1 1.0305 -11.4116 -3.5379 28 6 3.1093 -5.5801 -1.1494 29 1 -0.3634 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3634 -0.8897 -0.5142 32 1 2.0306 2.1594 0.0004 33 1 4.5046 1.2916 -0.0011 34 1 4.7007 -2.9582 -0.5584 35 1 4.2551 -2.2819 1.0267 36 1 4.6776 -4.0049 0.8811 37 1 3.7892 -5.3625 1.6120 38 1 2.0701 -5.6491 2.0439 39 1 1.9219 -7.5929 0.6363 40 1 3.5945 -7.7397 1.2577 41 1 3.1457 -7.6939 -2.6448 42 1 1.7883 -7.9614 -1.5249 43 1 2.4155 -10.2903 -2.7197 44 1 3.3584 -14.7028 -2.6191 45 1 4.0260 -5.0388 -1.3832 46 1 2.4679 -5.6205 -2.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001269209222.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:09:40 Heat of formation + Delta-G solvation = -52.771350 kcal Electronic energy + Delta-G solvation = -28749.677908 eV Core-core repulsion = 24640.935836 eV Total energy + Delta-G solvation = -4108.742072 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.70130 -41.31688 -40.37969 -39.12394 -36.63086 -35.90151 -34.96437 -33.76227 -32.72435 -31.29964 -29.83737 -28.82764 -28.46859 -27.50850 -25.86800 -24.06146 -22.53432 -22.36328 -21.27835 -21.24704 -20.35778 -20.22751 -18.75711 -18.02330 -17.60415 -17.46482 -17.16426 -16.91151 -16.42733 -16.13401 -15.95978 -15.55903 -15.16349 -14.91997 -14.63021 -14.51818 -14.37985 -14.34944 -14.17449 -14.00325 -13.93431 -13.59387 -13.48652 -13.37235 -13.05066 -12.93599 -12.78071 -12.69099 -12.56971 -12.41639 -12.26622 -11.98019 -11.74707 -11.49187 -11.23193 -10.65290 -10.39943 -10.23436 -9.96466 -9.53954 -9.22517 -8.40661 -6.01031 0.01719 1.30147 1.35215 1.41439 1.43849 1.55281 1.96569 1.99436 2.08935 2.22927 2.64062 3.14261 3.21016 3.44653 3.59213 3.68672 3.81766 3.92133 3.96471 4.09748 4.18429 4.25418 4.28794 4.35753 4.44499 4.53758 4.58406 4.60708 4.64390 4.73007 4.75077 4.80750 4.89603 4.92760 5.03791 5.11330 5.14105 5.22415 5.34340 5.50294 5.53171 5.85934 5.89761 5.94314 6.01720 6.21811 6.60496 6.87763 6.89324 7.40675 7.97793 8.76902 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.027763 B = 0.002098 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1008.292385 B =13343.806339 C =13763.516431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.095 4.095 3 C -0.237 4.237 4 C 0.012 3.988 5 O -0.162 6.162 6 C -0.115 4.115 7 C 0.598 3.402 8 O -0.555 6.555 9 N -0.593 5.593 10 C 0.074 3.926 11 C 0.127 3.873 12 H 0.099 0.901 13 C -0.126 4.126 14 C 0.053 3.947 15 N -0.521 5.521 16 C 0.047 3.953 17 C 0.453 3.547 18 O -0.604 6.604 19 N -0.594 5.594 20 C -0.325 4.325 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.257 1.257 26 H -0.275 1.275 27 H -0.233 1.233 28 C 0.040 3.960 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.065 0.935 32 H 0.179 0.821 33 H 0.254 0.746 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.043 0.957 40 H 0.066 0.934 41 H 0.120 0.880 42 H 0.078 0.922 43 H 0.389 0.611 44 H 0.279 0.721 45 H 0.091 0.909 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.452 34.813 1.201 35.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.098 4.098 3 C -0.256 4.256 4 C -0.058 4.058 5 O -0.058 6.058 6 C -0.167 4.167 7 C 0.388 3.612 8 O -0.436 6.436 9 N -0.324 5.324 10 C -0.068 4.068 11 C 0.022 3.978 12 H 0.117 0.883 13 C -0.165 4.165 14 C -0.075 4.075 15 N -0.246 5.246 16 C -0.084 4.084 17 C 0.241 3.759 18 O -0.488 6.488 19 N -0.236 5.236 20 C -0.454 4.454 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.181 1.181 26 H -0.201 1.201 27 H -0.157 1.157 28 C -0.089 4.089 29 H 0.094 0.906 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.196 0.804 33 H 0.270 0.730 34 H 0.089 0.911 35 H 0.104 0.896 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.138 0.862 42 H 0.096 0.904 43 H 0.224 0.776 44 H 0.088 0.912 45 H 0.109 0.891 46 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.716 34.062 1.726 34.307 hybrid contribution -1.264 -0.679 -0.602 1.556 sum -4.981 33.383 1.124 33.771 Atomic orbital electron populations 1.20441 0.88259 1.03643 1.02983 1.21010 0.98139 0.91933 0.98751 1.22070 0.92420 1.00609 1.10477 1.25366 1.01279 0.80209 0.98906 1.84259 1.27106 1.23649 1.70764 1.21475 0.82647 0.93956 1.18592 1.16907 0.85064 0.82831 0.76380 1.90808 1.17188 1.82847 1.52770 1.47665 1.09835 1.05086 1.69772 1.22079 0.79363 1.02658 1.02666 1.22265 1.00213 0.79595 0.95709 0.88279 1.23042 1.03250 0.93088 0.97104 1.22893 0.98113 0.96930 0.89528 1.63205 1.57803 1.01552 1.01998 1.22110 0.98321 0.88958 0.99055 1.20808 0.84425 0.86537 0.84147 1.90534 1.38676 1.86569 1.32997 1.42041 1.42753 1.06466 1.32328 1.18987 1.25542 0.84058 1.16822 0.92551 1.26094 1.00094 0.93835 1.01443 1.69802 1.45518 0.99843 1.42366 0.85380 0.78529 0.79641 0.78077 1.18119 1.20059 1.15680 1.23183 1.00508 0.88138 0.97048 0.90633 0.89405 0.91567 0.80355 0.73045 0.91123 0.89599 0.89381 0.89055 0.89460 0.93905 0.91567 0.86191 0.90387 0.77610 0.91194 0.89108 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.60 9.89 71.24 0.70 -0.89 16 2 C -0.10 -1.67 6.20 -19.74 -0.12 -1.79 16 3 C -0.24 -2.54 10.83 22.07 0.24 -2.30 16 4 C 0.01 0.10 12.08 67.10 0.81 0.91 16 5 O -0.16 -2.34 7.54 -5.08 -0.04 -2.38 16 6 C -0.12 -2.29 6.70 24.07 0.16 -2.12 16 7 C 0.60 14.25 7.63 86.44 0.66 14.91 16 8 O -0.56 -16.28 14.10 -4.33 -0.06 -16.34 16 9 N -0.59 -12.15 2.88 -820.73 -2.37 -14.51 16 10 C 0.07 1.12 8.14 127.77 1.04 2.16 16 11 C 0.13 2.83 3.35 46.17 0.15 2.98 16 12 H 0.10 2.47 7.00 -2.39 -0.02 2.45 16 13 C -0.13 -2.85 6.58 31.98 0.21 -2.64 16 14 C 0.05 1.61 5.74 86.77 0.50 2.11 16 15 N -0.52 -15.88 4.86 -890.10 -4.33 -20.21 16 16 C 0.05 1.49 5.05 85.55 0.43 1.92 16 17 C 0.45 20.73 7.58 87.66 0.66 21.39 16 18 O -0.60 -33.51 14.61 -3.10 -0.05 -33.55 16 19 N -0.59 -28.38 5.09 -306.99 -1.56 -29.95 16 20 C -0.32 -19.19 10.16 84.04 0.85 -18.34 16 21 H 0.06 3.95 7.39 -2.91 -0.02 3.93 16 22 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 23 N -0.93 -56.79 13.96 21.66 0.30 -56.49 16 24 Si 0.96 39.36 27.74 68.60 1.90 41.27 16 25 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 26 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16 27 H -0.23 -8.10 6.52 99.48 0.65 -7.45 16 28 C 0.04 0.91 6.51 86.64 0.56 1.47 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.07 1.42 6.34 -2.39 -0.02 1.40 16 32 H 0.18 0.94 8.06 -2.91 -0.02 0.92 16 33 H 0.25 -0.48 8.06 -2.91 -0.02 -0.50 16 34 H 0.07 0.97 8.08 -2.39 -0.02 0.95 16 35 H 0.09 1.16 5.97 -2.39 -0.01 1.15 16 36 H 0.09 1.30 6.05 -2.39 -0.01 1.28 16 37 H 0.09 1.90 6.08 -2.39 -0.01 1.89 16 38 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.04 1.30 7.62 -2.39 -0.02 1.28 16 40 H 0.07 2.45 7.37 -2.39 -0.02 2.43 16 41 H 0.12 3.14 8.03 -2.39 -0.02 3.12 16 42 H 0.08 2.12 7.85 -2.39 -0.02 2.10 16 43 H 0.39 15.46 5.76 -92.70 -0.53 14.93 16 44 H 0.28 15.48 8.31 -92.71 -0.77 14.71 16 45 H 0.09 1.96 7.13 -2.39 -0.02 1.94 16 46 H 0.07 1.51 7.55 -2.39 -0.02 1.50 16 Total: -1.00 -82.12 370.51 1.57 -80.55 By element: Atomic # 1 Polarization: 31.87 SS G_CDS: 0.43 Total: 32.30 kcal Atomic # 6 Polarization: 11.99 SS G_CDS: 7.34 Total: 19.32 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -7.96 Total: -121.16 kcal Atomic # 8 Polarization: -52.13 SS G_CDS: -0.14 Total: -52.27 kcal Atomic # 14 Polarization: 39.36 SS G_CDS: 1.90 Total: 41.27 kcal Total: -82.12 1.57 -80.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001269209222.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.777 kcal (2) G-P(sol) polarization free energy of solvation -82.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.549 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds