Wall clock time and date at job start Tue Mar 31 2020 19:07:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.35131 * 126.44387 * 2 1 4 4 O 1.33932 * 108.76913 * 179.75851 * 3 2 1 5 5 C 1.34911 * 109.38283 * 0.40170 * 4 3 2 6 6 C 1.46660 * 125.98461 * 179.86639 * 5 4 3 7 7 O 1.21696 * 119.99756 * 179.69274 * 6 5 4 8 8 N 1.34772 * 120.00539 * 359.69033 * 6 5 4 9 9 C 1.46497 * 120.00408 * 180.02562 * 8 6 5 10 10 C 1.52997 * 110.27342 * 302.08686 * 9 8 6 11 11 C 1.54592 * 110.30796 * 64.28535 * 9 8 6 12 12 C 1.54934 * 102.92538 * 96.96012 * 11 9 8 13 13 N 1.48534 * 103.22627 * 37.41204 * 12 11 9 14 14 C 1.46903 * 110.99950 * 200.28082 * 13 12 11 15 15 C 1.50694 * 109.47066 * 287.39612 * 14 13 12 16 16 O 1.21297 * 120.00199 * 359.97438 * 15 14 13 17 17 N 1.34784 * 119.99988 * 180.02562 * 15 14 13 18 18 C 1.37096 * 119.99735 * 179.72439 * 17 15 14 19 19 H 1.07998 * 120.00618 * 0.02562 * 18 17 15 20 20 C 1.38955 * 119.99464 * 179.97438 * 18 17 15 21 21 N 1.31407 * 120.00058 * 0.02562 * 20 18 17 22 22 Si 1.86805 * 119.99669 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47319 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46816 * 120.00520 * 22 20 18 25 25 H 1.48501 * 109.47099 * 240.00173 * 22 20 18 26 26 C 1.47897 * 105.81961 * 320.79405 * 13 12 11 27 27 C 1.36546 * 108.02774 * 359.60244 * 5 4 3 28 28 H 1.09002 * 109.47197 * 269.99681 * 1 2 3 29 29 H 1.09000 * 109.47468 * 30.00085 * 1 2 3 30 30 H 1.08997 * 109.46938 * 149.99972 * 1 2 3 31 31 H 1.08000 * 125.61244 * 359.96504 * 3 2 1 32 32 H 0.97008 * 119.99560 * 0.02562 * 8 6 5 33 33 H 1.08996 * 109.47331 * 297.90968 * 10 9 8 34 34 H 1.09004 * 109.47080 * 57.91152 * 10 9 8 35 35 H 1.09002 * 109.47493 * 177.91060 * 10 9 8 36 36 H 1.09003 * 110.72520 * 215.31765 * 11 9 8 37 37 H 1.08997 * 110.72559 * 338.41704 * 11 9 8 38 38 H 1.09002 * 110.66774 * 278.97766 * 12 11 9 39 39 H 1.09000 * 110.66999 * 155.84946 * 12 11 9 40 40 H 1.08998 * 109.46809 * 167.39713 * 14 13 12 41 41 H 1.09002 * 109.47056 * 47.39454 * 14 13 12 42 42 H 0.97000 * 119.99339 * 0.02562 * 17 15 14 43 43 H 0.97000 * 119.99610 * 179.97438 * 21 20 18 44 44 H 1.09006 * 109.91642 * 144.68166 * 26 13 12 45 45 H 1.09002 * 109.91860 * 265.77683 * 26 13 12 46 46 H 1.07995 * 126.64771 * 180.26384 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0870 0.0000 4 8 3.5858 0.6804 0.0053 5 6 3.6260 -0.6681 -0.0001 6 6 4.8379 -1.4940 0.0004 7 8 4.7472 -2.7076 0.0008 8 7 6.0521 -0.9092 0.0004 9 6 7.2627 -1.7342 0.0003 10 6 7.2714 -2.6628 1.2162 11 6 7.3517 -2.5562 -1.3060 12 6 8.2895 -1.6983 -2.1920 13 7 9.2827 -1.1690 -1.2226 14 6 9.9565 0.0221 -1.7566 15 6 10.9141 -0.3882 -2.8454 16 8 11.0248 -1.5579 -3.1466 17 7 11.6483 0.5446 -3.4838 18 6 12.5236 0.1706 -4.4705 19 1 12.6246 -0.8712 -4.7365 20 6 13.2801 1.1323 -5.1290 21 7 13.1569 2.4000 -4.8057 22 14 14.4723 0.6229 -6.4740 23 1 14.4244 -0.8513 -6.6457 24 1 14.0919 1.2830 -7.7486 25 1 15.8489 1.0322 -6.0962 26 6 8.5177 -0.8419 0.0002 27 6 2.3408 -1.1292 -0.0001 28 1 -0.3634 -0.0001 1.0277 29 1 -0.3634 0.8900 -0.5138 30 1 -0.3633 -0.8900 -0.5138 31 1 1.9770 2.1145 -0.0005 32 1 6.1245 0.0582 0.0004 33 1 7.2842 -2.0667 2.1286 34 1 6.3783 -3.2875 1.2027 35 1 8.1581 -3.2960 1.1835 36 1 7.7901 -3.5359 -1.1162 37 1 6.3686 -2.6577 -1.7656 38 1 7.7373 -0.8836 -2.6605 39 1 8.7786 -2.3160 -2.9452 40 1 10.5066 0.5176 -0.9566 41 1 9.2136 0.7072 -2.1652 42 1 11.5605 1.4798 -3.2421 43 1 13.6854 3.0712 -5.2652 44 1 9.1219 -1.0507 0.8831 45 1 8.2296 0.2093 -0.0122 46 1 2.0267 -2.1625 0.0003 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001270616402.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:07:52 Heat of formation + Delta-G solvation = -45.249111 kcal Electronic energy + Delta-G solvation = -28590.811562 eV Core-core repulsion = 24482.395679 eV Total energy + Delta-G solvation = -4108.415883 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 335.168 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.05703 -40.52128 -38.74143 -37.57088 -34.91347 -34.43462 -33.78307 -32.00409 -31.20701 -30.55423 -29.61791 -27.67092 -27.54120 -25.43296 -24.24159 -23.58674 -21.60978 -21.41681 -20.41277 -19.59699 -19.13483 -18.28358 -17.86556 -16.72694 -16.71425 -16.32654 -16.04498 -15.20644 -14.96013 -14.68072 -14.59452 -14.34533 -14.02430 -13.89961 -13.59861 -13.53604 -13.42869 -13.34850 -13.09675 -12.96326 -12.56850 -12.39223 -12.18621 -12.06351 -11.78953 -11.48865 -11.32354 -11.25547 -11.04073 -10.93101 -10.75692 -10.33389 -10.22133 -10.19532 -10.08208 -9.49509 -9.34868 -8.92385 -8.49407 -8.01180 -7.93089 -6.40582 -3.81048 0.73791 1.93313 2.34610 2.89823 2.92131 3.17170 3.27627 3.35096 3.91936 4.03706 4.21880 4.30976 4.37745 4.42109 4.56801 4.70931 4.84767 4.93732 5.13475 5.18470 5.23631 5.24749 5.31211 5.39728 5.43397 5.47561 5.53685 5.58668 5.61938 5.70373 5.78666 5.81212 5.91109 5.97395 6.01450 6.17371 6.19840 6.28617 6.36526 6.42801 6.50648 7.11460 7.14612 7.25679 7.56762 7.84107 8.07952 8.63525 9.19953 9.56089 10.08243 10.77398 Molecular weight = 335.17amu Principal moments of inertia in cm(-1) A = 0.018702 B = 0.002166 C = 0.002035 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.783748 B =12925.776767 C =13753.522031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.195 4.195 3 C -0.009 4.009 4 O -0.163 6.163 5 C -0.076 4.076 6 C 0.605 3.395 7 O -0.513 6.513 8 N -0.709 5.709 9 C 0.164 3.836 10 C -0.156 4.156 11 C -0.121 4.121 12 C 0.040 3.960 13 N -0.487 5.487 14 C 0.036 3.964 15 C 0.446 3.554 16 O -0.575 6.575 17 N -0.567 5.567 18 C -0.296 4.296 19 H 0.104 0.896 20 C 0.021 3.979 21 N -0.903 5.903 22 Si 0.929 3.071 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.282 1.282 26 C 0.035 3.965 27 C -0.118 4.118 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.209 0.791 32 H 0.403 0.597 33 H 0.054 0.946 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.086 0.914 37 H 0.076 0.924 38 H 0.037 0.963 39 H 0.101 0.899 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.391 0.609 43 H 0.270 0.730 44 H 0.093 0.907 45 H 0.048 0.952 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.111 0.087 13.137 26.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.196 4.196 3 C -0.079 4.079 4 O -0.058 6.058 5 C -0.128 4.128 6 C 0.391 3.609 7 O -0.390 6.390 8 N -0.360 5.360 9 C 0.078 3.922 10 C -0.214 4.214 11 C -0.160 4.160 12 C -0.088 4.088 13 N -0.211 5.211 14 C -0.096 4.096 15 C 0.231 3.769 16 O -0.458 6.458 17 N -0.204 5.204 18 C -0.426 4.426 19 H 0.121 0.879 20 C -0.181 4.181 21 N -0.545 5.545 22 Si 0.756 3.244 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.094 4.094 27 C -0.139 4.139 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.226 0.774 32 H 0.238 0.762 33 H 0.073 0.927 34 H 0.098 0.902 35 H 0.092 0.908 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.055 0.945 39 H 0.119 0.881 40 H 0.107 0.893 41 H 0.067 0.933 42 H 0.224 0.776 43 H 0.080 0.920 44 H 0.111 0.889 45 H 0.066 0.934 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.267 -1.621 12.956 25.812 hybrid contribution -0.180 1.806 -0.715 1.951 sum -22.446 0.185 12.241 25.568 Atomic orbital electron populations 1.20187 0.88563 1.02963 1.02356 1.20510 0.97784 0.92411 1.08919 1.24220 0.79898 1.00101 1.03700 1.84064 1.29403 1.21726 1.70588 1.22158 0.96282 0.80566 1.13775 1.16518 0.81116 0.86450 0.76862 1.90861 1.85871 1.12054 1.50238 1.46212 1.05086 1.10454 1.74280 1.21270 0.82647 0.91127 0.97145 1.22185 1.04124 0.99572 0.95533 1.22880 0.99945 0.99300 0.93868 1.23324 0.91832 0.97994 0.95613 1.64550 1.25309 1.27748 1.03453 1.22088 0.97578 0.91564 0.98347 1.19676 0.85016 0.86737 0.85464 1.90516 1.69595 1.17947 1.67784 1.41864 1.36493 1.08703 1.33306 1.19747 1.15917 0.95358 1.11573 0.87862 1.25258 0.98777 0.94842 0.99191 1.69619 1.41892 1.00185 1.42777 0.85805 0.79574 0.78965 0.80038 1.19214 1.20813 1.20774 1.23227 0.92897 0.97003 0.96257 1.21853 0.90540 1.00607 1.00899 0.91234 0.91393 0.91217 0.77434 0.76153 0.92687 0.90219 0.90759 0.89498 0.90520 0.94462 0.88101 0.89292 0.93257 0.77568 0.91983 0.88860 0.93362 0.82261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.42 10.39 36.00 0.37 -0.04 16 2 C -0.19 -1.50 6.14 -104.93 -0.64 -2.15 16 3 C -0.01 -0.07 12.00 29.63 0.36 0.29 16 4 O -0.16 -1.53 10.40 5.00 0.05 -1.48 16 5 C -0.08 -0.82 7.13 -36.79 -0.26 -1.08 16 6 C 0.60 7.33 6.97 -12.86 -0.09 7.24 16 7 O -0.51 -7.42 13.74 5.19 0.07 -7.35 16 8 N -0.71 -7.68 5.14 -47.65 -0.25 -7.93 16 9 C 0.16 1.96 0.94 -130.47 -0.12 1.83 16 10 C -0.16 -1.76 8.15 37.16 0.30 -1.45 16 11 C -0.12 -1.69 5.85 -24.87 -0.15 -1.83 16 12 C 0.04 0.65 5.93 -1.90 -0.01 0.64 16 13 N -0.49 -8.04 4.91 -231.89 -1.14 -9.18 16 14 C 0.04 0.64 5.19 -4.98 -0.03 0.61 16 15 C 0.45 10.55 7.61 -10.98 -0.08 10.47 16 16 O -0.58 -15.61 14.64 5.54 0.08 -15.53 16 17 N -0.57 -14.38 5.29 -10.96 -0.06 -14.44 16 18 C -0.30 -8.29 9.68 -14.93 -0.14 -8.44 16 19 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 20 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 21 N -0.90 -24.62 13.05 55.50 0.72 -23.90 16 22 Si 0.93 21.17 29.55 -169.99 -5.02 16.14 16 23 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 26 C 0.03 0.43 6.12 -2.76 -0.02 0.42 16 27 C -0.12 -1.15 10.57 -39.39 -0.42 -1.57 16 28 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.21 0.64 8.06 -52.49 -0.42 0.22 16 32 H 0.40 3.70 7.85 -40.82 -0.32 3.38 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.08 1.00 6.03 -51.93 -0.31 0.69 16 35 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 36 H 0.09 1.23 7.85 -51.93 -0.41 0.82 16 37 H 0.08 1.10 6.81 -51.93 -0.35 0.74 16 38 H 0.04 0.59 7.81 -51.93 -0.41 0.19 16 39 H 0.10 1.94 7.10 -51.93 -0.37 1.57 16 40 H 0.09 1.41 8.08 -51.93 -0.42 0.99 16 41 H 0.05 0.79 7.83 -51.93 -0.41 0.39 16 42 H 0.39 9.47 7.90 -40.82 -0.32 9.15 16 43 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 44 H 0.09 1.08 7.68 -51.93 -0.40 0.68 16 45 H 0.05 0.52 7.10 -51.93 -0.37 0.15 16 46 H 0.16 1.45 8.06 -52.49 -0.42 1.02 16 LS Contribution 380.54 15.07 5.73 5.73 Total: -1.00 -33.29 380.54 -7.38 -40.67 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -6.55 Total: 11.86 kcal Atomic # 6 Polarization: 6.41 SS G_CDS: -1.03 Total: 5.39 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.72 Total: -55.44 kcal Atomic # 8 Polarization: -24.56 SS G_CDS: 0.20 Total: -24.35 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -33.29 -7.38 -40.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001270616402.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.577 kcal (2) G-P(sol) polarization free energy of solvation -33.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.867 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds